>REFP2_MOUSE (Q9JJW6) RNA and export factor-binding protein 2|
          Length = 218

 Score = 35.0 bits (79), Expect = 0.074
 Identities = 26/82 (31%), Positives = 30/82 (36%), Gaps = 1/82 (1%)
 Frame = +1

Query: 145 IDMSLDDIIKNNKKGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPNRRAFKRSG 324
           +DMSLDDIIK N+                                      NR A  R G
Sbjct: 5   MDMSLDDIIKLNRNQRRVNRGGGPRR-------------------------NRPAIARGG 39

Query: 325 -NRAAPYQPPKAPESAWQHDMY 387
            NR APY  PK     WQHD++
Sbjct: 40  RNRPAPYSRPKPLPDKWQHDLF 61

>THOC4_MOUSE (O08583) THO complex subunit 4 (Tho4) (RNA and export|
           factor-binding protein 1) (REF1-I) (Ally of AML-1 and
           LEF-1) (Aly/REF)
          Length = 254

 Score = 33.5 bits (75), Expect = 0.21
 Identities = 25/87 (28%), Positives = 29/87 (33%), Gaps = 6/87 (6%)
 Frame = +1

Query: 145 IDMSLDDIIK-NNKKGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPNRRAFKRS 321
           +DMSLDDIIK N  +                                     NR A  R 
Sbjct: 4   MDMSLDDIIKLNRSQRGGRGGGRGRGRAGSQGGRGGAVQAAARVNRGGGPMRNRPAIARG 63

Query: 322 G-----NRAAPYQPPKAPESAWQHDMY 387
                 NR APY  PK     WQHD++
Sbjct: 64  AAGGGRNRPAPYSRPKQLPDKWQHDLF 90

>THOC4_HUMAN (Q86V81) THO complex subunit 4 (Tho4) (Ally of AML-1 and LEF-1)|
           (Transcriptional coactivator Aly/REF) (bZIP-enhancing
           factor BEF)
          Length = 256

 Score = 33.1 bits (74), Expect = 0.28
 Identities = 25/88 (28%), Positives = 29/88 (32%), Gaps = 7/88 (7%)
 Frame = +1

Query: 145 IDMSLDDIIK-NNKKGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPNRRAFKRS 321
           +DMSLDDIIK N  +                                     NR A  R 
Sbjct: 4   MDMSLDDIIKLNRSQRGGRGGGRGRGRAGSQGGRGGGAQAAARVNRGGGPIRNRPAIARG 63

Query: 322 G------NRAAPYQPPKAPESAWQHDMY 387
                  NR APY  PK     WQHD++
Sbjct: 64  AAGGGGRNRPAPYSRPKQLPDKWQHDLF 91

>CIC_MOUSE (Q924A2) Protein capicua homolog|
          Length = 1606

 Score = 31.6 bits (70), Expect = 0.81
 Identities = 15/26 (57%), Positives = 16/26 (61%)
 Frame = -3

Query: 391  PSTCRAATPIPGPSAAGRAPPCSPTS 314
            P T  AATP+P PS AG   P SP S
Sbjct: 1537 PPTGMAATPVPTPSPAGGPDPTSPGS 1562

>VE4_HPV04 (Q07852) Probable protein E4|
          Length = 181

 Score = 29.6 bits (65), Expect = 3.1
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 295 PNRRAFKRSGNRAAPYQPPKAPESAWQHDMYSD 393
           P+RRA    GNR  P +PP  P    ++D   D
Sbjct: 84  PSRRALLEGGNRGNPTRPPPRPLKPREYDYDED 116

>CIC_HUMAN (Q96RK0) Protein capicua homolog|
          Length = 1608

 Score = 29.3 bits (64), Expect = 4.0
 Identities = 14/26 (53%), Positives = 15/26 (57%)
 Frame = -3

Query: 391  PSTCRAATPIPGPSAAGRAPPCSPTS 314
            P T  AA P P PS AG   P SP+S
Sbjct: 1539 PPTGTAAAPAPTPSPAGGPDPTSPSS 1564


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.313    0.128    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,983,684
Number of Sequences: 219361
Number of extensions: 305127
Number of successful extensions: 1043
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1040
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2336739400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)