ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast55e07 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK059981.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-212-E08, full insert sequence Length = 1250 Score = 333 bits (168), Expect = 3e-88 Identities = 231/252 (91%) Strand = Plus / Plus Query: 182 tctccaagttcaaggtggcgctgtgccagctctcggtaacggcggacaaggctcgcaaca 241 ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| Sbjct: 188 tctccaagttcaaggtggcgctgtgccagctgtcggtcacggcggacaaggctcgcaaca 247 Query: 242 tcgcgcgcgcccgcgccgccatcgagtccgccgcggccgacggcgccaagctcgtgctcc 301 ||||||| || |||| ||||||||| | |||||||| | |||||||||||||||||| | Sbjct: 248 tcgcgcgggcgcgcgaggccatcgaggctgccgcggcgggcggcgccaagctcgtgcttc 307 Query: 302 tcccggagatatggaatggtccatattcaaatgacagctttccagagtatgctgaggaca 361 |||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||| Sbjct: 308 tcccggagatatggaatggtccatattcaaatgacagctttccagaatatgccgaagaca 367 Query: 362 ttgaggctggtggcgatgcagctccgtcattttcaatgatgtctgatgttgctcgcagct 421 | || || ||||| ||||||||||| ||||||||||||||||| || ||||||||||||| Sbjct: 368 tcgaagccggtggtgatgcagctccttcattttcaatgatgtcagaggttgctcgcagct 427 Query: 422 tgcaaattactc 433 |||||||||||| Sbjct: 428 tgcaaattactc 439
>gb|AY103764.1| Zea mays PCO141375 mRNA sequence Length = 1044 Score = 246 bits (124), Expect = 5e-62 Identities = 220/252 (87%) Strand = Plus / Plus Query: 182 tctccaagttcaaggtggcgctgtgccagctctcggtaacggcggacaaggctcgcaaca 241 ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| Sbjct: 96 tctccaagttcaaggtggcgctgtgccagctctcggtgacggcggacaagagtcgcaaca 155 Query: 242 tcgcgcgcgcccgcgccgccatcgagtccgccgcggccgacggcgccaagctcgtgctcc 301 |||||| ||| || || ||||||||| || || |||||||||||||||||||| | | Sbjct: 156 tcgcgcacgcgcgagcggccatcgagaaggcagcctccgacggcgccaagctcgtggttc 215 Query: 302 tcccggagatatggaatggtccatattcaaatgacagctttccagagtatgctgaggaca 361 |||| |||||||||||||| || || ||||||||||||||||||||||| || ||||||| Sbjct: 216 tccccgagatatggaatggcccttactcaaatgacagctttccagagtacgccgaggaca 275 Query: 362 ttgaggctggtggcgatgcagctccgtcattttcaatgatgtctgatgttgctcgcagct 421 |||| ||||| || |||||||| || |||||||||||| |||| || ||||||||||| | Sbjct: 276 ttgaagctggcggagatgcagccccttcattttcaatgctgtcagaggttgctcgcagtt 335 Query: 422 tgcaaattactc 433 | ||||| |||| Sbjct: 336 tacaaatcactc 347
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 174 bits (88), Expect = 2e-40 Identities = 118/128 (92%) Strand = Plus / Plus Query: 306 ggagatatggaatggtccatattcaaatgacagctttccagagtatgctgaggacattga 365 |||||||||||||||||||||||||||||||||||||||||| ||||| || ||||| || Sbjct: 4007251 ggagatatggaatggtccatattcaaatgacagctttccagaatatgccgaagacatcga 4007310 Query: 366 ggctggtggcgatgcagctccgtcattttcaatgatgtctgatgttgctcgcagcttgca 425 || ||||| ||||||||||| ||||||||||||||||| || ||||||||||||||||| Sbjct: 4007311 agccggtggtgatgcagctccttcattttcaatgatgtcagaggttgctcgcagcttgca 4007370 Query: 426 aattactc 433 |||||||| Sbjct: 4007371 aattactc 4007378 Score = 151 bits (76), Expect = 2e-33 Identities = 109/120 (90%) Strand = Plus / Plus Query: 188 agttcaaggtggcgctgtgccagctctcggtaacggcggacaaggctcgcaacatcgcgc 247 ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| Sbjct: 4006370 agttcaaggtggcgctgtgccagctgtcggtcacggcggacaaggctcgcaacatcgcgc 4006429 Query: 248 gcgcccgcgccgccatcgagtccgccgcggccgacggcgccaagctcgtgctcctcccgg 307 | || |||| ||||||||| | |||||||| | |||||||||||||||||| ||||||| Sbjct: 4006430 gggcgcgcgaggccatcgaggctgccgcggcgggcggcgccaagctcgtgcttctcccgg 4006489 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 255 cgccgccatcgagtccgccgc 275 ||||||||||||||||||||| Sbjct: 32564812 cgccgccatcgagtccgccgc 32564792 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 catcgagtccgccgcggccg 280 |||||||||||||||||||| Sbjct: 33347891 catcgagtccgccgcggccg 33347872 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 catcgagtccgccgcggccg 280 |||||||||||||||||||| Sbjct: 33347860 catcgagtccgccgcggccg 33347841 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 257 ccgccatcgagtccgccgcggccg 280 |||||||||||||||||| ||||| Sbjct: 33347790 ccgccatcgagtccgccgtggccg 33347767
>gb|AC090484.4| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0061L19, from chromosome 3, complete sequence Length = 153322 Score = 174 bits (88), Expect = 2e-40 Identities = 118/128 (92%) Strand = Plus / Minus Query: 306 ggagatatggaatggtccatattcaaatgacagctttccagagtatgctgaggacattga 365 |||||||||||||||||||||||||||||||||||||||||| ||||| || ||||| || Sbjct: 92117 ggagatatggaatggtccatattcaaatgacagctttccagaatatgccgaagacatcga 92058 Query: 366 ggctggtggcgatgcagctccgtcattttcaatgatgtctgatgttgctcgcagcttgca 425 || ||||| ||||||||||| ||||||||||||||||| || ||||||||||||||||| Sbjct: 92057 agccggtggtgatgcagctccttcattttcaatgatgtcagaggttgctcgcagcttgca 91998 Query: 426 aattactc 433 |||||||| Sbjct: 91997 aattactc 91990 Score = 151 bits (76), Expect = 2e-33 Identities = 109/120 (90%) Strand = Plus / Minus Query: 188 agttcaaggtggcgctgtgccagctctcggtaacggcggacaaggctcgcaacatcgcgc 247 ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| Sbjct: 92998 agttcaaggtggcgctgtgccagctgtcggtcacggcggacaaggctcgcaacatcgcgc 92939 Query: 248 gcgcccgcgccgccatcgagtccgccgcggccgacggcgccaagctcgtgctcctcccgg 307 | || |||| ||||||||| | |||||||| | |||||||||||||||||| ||||||| Sbjct: 92938 gggcgcgcgaggccatcgaggctgccgcggcgggcggcgccaagctcgtgcttctcccgg 92879
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 174 bits (88), Expect = 2e-40 Identities = 118/128 (92%) Strand = Plus / Plus Query: 306 ggagatatggaatggtccatattcaaatgacagctttccagagtatgctgaggacattga 365 |||||||||||||||||||||||||||||||||||||||||| ||||| || ||||| || Sbjct: 4007362 ggagatatggaatggtccatattcaaatgacagctttccagaatatgccgaagacatcga 4007421 Query: 366 ggctggtggcgatgcagctccgtcattttcaatgatgtctgatgttgctcgcagcttgca 425 || ||||| ||||||||||| ||||||||||||||||| || ||||||||||||||||| Sbjct: 4007422 agccggtggtgatgcagctccttcattttcaatgatgtcagaggttgctcgcagcttgca 4007481 Query: 426 aattactc 433 |||||||| Sbjct: 4007482 aattactc 4007489 Score = 151 bits (76), Expect = 2e-33 Identities = 109/120 (90%) Strand = Plus / Plus Query: 188 agttcaaggtggcgctgtgccagctctcggtaacggcggacaaggctcgcaacatcgcgc 247 ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| Sbjct: 4006481 agttcaaggtggcgctgtgccagctgtcggtcacggcggacaaggctcgcaacatcgcgc 4006540 Query: 248 gcgcccgcgccgccatcgagtccgccgcggccgacggcgccaagctcgtgctcctcccgg 307 | || |||| ||||||||| | |||||||| | |||||||||||||||||| ||||||| Sbjct: 4006541 gggcgcgcgaggccatcgaggctgccgcggcgggcggcgccaagctcgtgcttctcccgg 4006600 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 255 cgccgccatcgagtccgccgc 275 ||||||||||||||||||||| Sbjct: 32655322 cgccgccatcgagtccgccgc 32655302 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 catcgagtccgccgcggccg 280 |||||||||||||||||||| Sbjct: 33438401 catcgagtccgccgcggccg 33438382 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 catcgagtccgccgcggccg 280 |||||||||||||||||||| Sbjct: 33438370 catcgagtccgccgcggccg 33438351 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 257 ccgccatcgagtccgccgcggccg 280 |||||||||||||||||| ||||| Sbjct: 33438300 ccgccatcgagtccgccgtggccg 33438277
>gb|AF466199.1| Sorghum bicolor putative receptor protein kinase, aminoalcoholphosphotransferase, putative growth-regulating factor 1, putative GAG-POL precursor, putative GAG-POL precursor, putative RIRE2 orf3, putative anthocyanin regulatory C1, putative protein T30F21.6, putative copia polyprotein, putative copia polyprotein, putative protein NP_196765.1, and gb protein genes, complete cds; and putative zinc finger protein gene, partial cds Length = 144159 Score = 58.0 bits (29), Expect = 2e-05 Identities = 86/105 (81%) Strand = Plus / Plus Query: 192 caaggtggcgctgtgccagctctcggtaacggcggacaaggctcgcaacatcgcgcgcgc 251 |||||| ||| ||||||||||| | || || ||||||||| | |||||||| ||||| Sbjct: 113474 caaggtcgcgttgtgccagctcgccgtcacaccggacaaggacgggaacatcgcccgcgc 113533 Query: 252 ccgcgccgccatcgagtccgccgcggccgacggcgccaagctcgt 296 ||||||| | ||||| ||||||| | || ||||||||||||||| Sbjct: 113534 ccgcgcccgcgtcgaggccgccgccgacgccggcgccaagctcgt 113578
>gb|DQ119341.1| Medicago sativa putative carbon-nitrogen hydrolase family protein mRNA, partial cds Length = 631 Score = 50.1 bits (25), Expect = 0.006 Identities = 52/61 (85%) Strand = Plus / Plus Query: 320 gtccatattcaaatgacagctttccagagtatgctgaggacattgaggctggtggcgatg 379 |||| ||||||||||| || ||||| | ||||||||||| ||||| |||||||| |||| Sbjct: 383 gtccttattcaaatgatagttttcctgtttatgctgaggatattgatgctggtggtgatg 442 Query: 380 c 380 | Sbjct: 443 c 443
>emb|CR854992.5| Zebrafish DNA sequence from clone DKEYP-30C3 in linkage group 5, complete sequence Length = 104348 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Plus Query: 23 ccatctccctcctctcgccctcc 45 ||||||||||||||||||||||| Sbjct: 70551 ccatctccctcctctcgccctcc 70573
>emb|CR391942.8| Zebrafish DNA sequence from clone DKEY-191H21 in linkage group 5, complete sequence Length = 25485 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Plus Query: 23 ccatctccctcctctcgccctcc 45 ||||||||||||||||||||||| Sbjct: 16741 ccatctccctcctctcgccctcc 16763
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 46.1 bits (23), Expect = 0.094 Identities = 32/35 (91%) Strand = Plus / Minus Query: 246 gcgcgcccgcgccgccatcgagtccgccgcggccg 280 ||||||||||||||||| |||||||| ||| |||| Sbjct: 4479664 gcgcgcccgcgccgccaacgagtccggcgccgccg 4479630
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 46.1 bits (23), Expect = 0.094 Identities = 32/35 (91%) Strand = Plus / Minus Query: 247 cgcgcccgcgccgccatcgagtccgccgcggccga 281 |||||| ||||||||||||| |||| ||||||||| Sbjct: 2132605 cgcgccagcgccgccatcgactccggcgcggccga 2132571
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 46.1 bits (23), Expect = 0.094 Identities = 26/27 (96%) Strand = Plus / Minus Query: 262 atcgagtccgccgcggccgacggcgcc 288 ||||||||||||||||| ||||||||| Sbjct: 3547568 atcgagtccgccgcggcggacggcgcc 3547542
>ref|NM_197407.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0028C01.40), mRNA Length = 1701 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Plus Query: 253 cgcgccgccatcgagtccgccgcggc 278 ||||||||||||||| |||||||||| Sbjct: 904 cgcgccgccatcgaggccgccgcggc 929
>gb|AC079029.11| Oryza sativa chromosome 10 BAC OSJNBb0028C01 genomic sequence, complete sequence Length = 137366 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Plus Query: 253 cgcgccgccatcgagtccgccgcggc 278 ||||||||||||||| |||||||||| Sbjct: 84442 cgcgccgccatcgaggccgccgcggc 84467
>gb|DQ397830.1| Cenarchaeum symbiosum clone C01C10, complete sequence Length = 40511 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Minus Query: 254 gcgccgccatcgagtccgccgcggcc 279 ||||||||||||||||||||| |||| Sbjct: 16394 gcgccgccatcgagtccgccggggcc 16369
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Minus Query: 253 cgcgccgccatcgagtccgccgcggc 278 ||||||||||||||| |||||||||| Sbjct: 19693070 cgcgccgccatcgaggccgccgcggc 19693045
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Minus Query: 253 cgcgccgccatcgagtccgccgcggc 278 ||||||||||||||| |||||||||| Sbjct: 19704346 cgcgccgccatcgaggccgccgcggc 19704321
>ref|XM_469933.1| Oryza sativa (japonica cultivar-group), mRNA Length = 516 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 255 cgccgccatcgagtccgccgc 275 ||||||||||||||||||||| Sbjct: 249 cgccgccatcgagtccgccgc 229
>emb|AL023693.25|HS32B1 Human DNA sequence from clone RP1-32B1 on chromosome 6q22.33-23.3 Contains the MYB gene for v-myb myeloblastosis viral oncogene homolog (avian), 2 novel genes, the 3' end of a novel protein and a CpG island, complete sequence Length = 188287 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 26 tctccctcctctcgccctccc 46 ||||||||||||||||||||| Sbjct: 166072 tctccctcctctcgccctccc 166052
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 275 cggccgacggcgccaagctcg 295 ||||||||||||||||||||| Sbjct: 1992957 cggccgacggcgccaagctcg 1992977
>emb|AL939120.1|SCO939120 Streptomyces coelicolor A3(2) complete genome; segment 17/29 Length = 248550 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 272 ccgcggccgacggcgccaagc 292 ||||||||||||||||||||| Sbjct: 87462 ccgcggccgacggcgccaagc 87482
>gb|AC087292.14| Homo sapiens chromosome 17, clone RP11-810M2, complete sequence Length = 195144 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 26 tctccctcctctcgccctcccacct 50 ||||||||||||| ||||||||||| Sbjct: 117087 tctccctcctctcaccctcccacct 117063
>gb|AC007563.2| Homo sapiens BAC clone RP11-506C8 from 2, complete sequence Length = 179859 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 322 ccatattcaaatgacagctttccag 346 ||||||||| ||||||||||||||| Sbjct: 77229 ccatattcagatgacagctttccag 77253
>gb|AC087096.11| Oryza sativa chromosome 3 BAC OSJNBa0087O09 genomic sequence, complete sequence Length = 119134 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 255 cgccgccatcgagtccgccgc 275 ||||||||||||||||||||| Sbjct: 98261 cgccgccatcgagtccgccgc 98241
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 247 cgcgcccgcgccgccatcga 266 |||||||||||||||||||| Sbjct: 2746495 cgcgcccgcgccgccatcga 2746514
>ref|NM_191369.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1332 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 catcgagtccgccgcggccg 280 |||||||||||||||||||| Sbjct: 645 catcgagtccgccgcggccg 626
>ref|XM_478960.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2355 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 26 tctccctcctctcgccctcccacc 49 |||||||||||||| ||||||||| Sbjct: 107 tctccctcctctcgtcctcccacc 130
>gb|AC007694.7| Drosophila melanogaster clone BACR17O24, complete sequence Length = 193722 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 cagccacatccacagccatc 27 |||||||||||||||||||| Sbjct: 115788 cagccacatccacagccatc 115807
>gb|BC061603.1| Xenopus tropicalis proteasome (prosome, macropain) subunit, beta type, 6, mRNA (cDNA clone MGC:75674 IMAGE:5380062), complete cds Length = 866 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 297 gctcctcccggagatatgga 316 |||||||||||||||||||| Sbjct: 90 gctcctcccggagatatgga 109
>gb|AC135563.5| Oryza sativa chromosome 3 BAC OSJNBb0015I02 genomic sequence, complete sequence Length = 122815 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 catcgagtccgccgcggccg 280 |||||||||||||||||||| Sbjct: 104407 catcgagtccgccgcggccg 104388 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 catcgagtccgccgcggccg 280 |||||||||||||||||||| Sbjct: 104376 catcgagtccgccgcggccg 104357 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 257 ccgccatcgagtccgccgcggccg 280 |||||||||||||||||| ||||| Sbjct: 104306 ccgccatcgagtccgccgtggccg 104283
>emb|AL591668.10| Human DNA sequence from clone RP13-546E3 on chromosome X Contains the 5' end of the PHF6 gene for PHD finger protein 6 and a CpG island, complete sequence Length = 119130 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 24 catctccctcctctcgccctcccacctc 51 ||||||||||||| ||||||||| |||| Sbjct: 56466 catctccctcctcccgccctccctcctc 56493
>emb|AL590420.6| Human DNA sequence from clone RP13-147B3 on chromosome X, complete sequence Length = 41782 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 24 catctccctcctctcgccctcccacctc 51 ||||||||||||| ||||||||| |||| Sbjct: 18397 catctccctcctcccgccctccctcctc 18370
>emb|AL035086.12|HS44A20 Human DNA sequence from clone RP1-44A20 on chromosome 6q23.1-24.3 Contains part of the gene for a novel protein similar to C1-tetrahydrofolate synthases (contains DKFZP586G1517 protein and FLJ21145, contains a tetrahydrofolate dehydrogenase/cyclohydrolase domain), part of a novel gene (contains FLJ31738 and KIAA1209) and a novel pseudogene similar to phosducin-like proteins. Contains a CpG island, complete sequence Length = 165090 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 26 tctccctcctctcgccctcccacc 49 |||||||||||| ||||||||||| Sbjct: 55101 tctccctcctcttgccctcccacc 55078
>ref|NM_203820.1| Xenopus tropicalis proteasome (prosome, macropain) subunit, beta type, 6 (psmb6), mRNA Length = 866 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 297 gctcctcccggagatatgga 316 |||||||||||||||||||| Sbjct: 90 gctcctcccggagatatgga 109
>emb|AL596255.17| Mouse DNA sequence from clone RP23-6K20 on chromosome 11 Contains the 3' end of the Myh13 gene for skeletal muscle myosin heavy polypeptide 13, the 5' end of the Gas7 gene for growth arrest specific 7, a novel gene and a CpG island, complete sequence Length = 251096 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 325 tattcaaatgacagctttcc 344 |||||||||||||||||||| Sbjct: 208644 tattcaaatgacagctttcc 208625
>gb|AF460262.1| Homo sapiens sequence a23a26 immunoglobulin heavy chain variable region gene, partial cds Length = 183 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 agccatctccctcctctcgc 40 |||||||||||||||||||| Sbjct: 161 agccatctccctcctctcgc 142
>gb|AC107326.4| Drosophila melanogaster X BAC RP98-33A8 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 177096 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 3 agccgcagccacatccacagccat 26 |||| ||||||||||||||||||| Sbjct: 25844 agccacagccacatccacagccat 25867
>dbj|AK126936.1| Homo sapiens cDNA FLJ44989 fis, clone BRAWH3008167, highly similar to Homo sapiens CUB and Sushi multiple domains 1 (CSMD1) Length = 3989 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 387 gtcattttcaatgatgtctg 406 |||||||||||||||||||| Sbjct: 2892 gtcattttcaatgatgtctg 2911
>gb|AC104110.2| Homo sapiens chromosome 5 clone RP11-160A17, complete sequence Length = 165636 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 tctccctcctctcgccctcc 45 |||||||||||||||||||| Sbjct: 121572 tctccctcctctcgccctcc 121553
>gb|AC021523.8| Homo sapiens chromosome 8, clone RP11-336N16, complete sequence Length = 170299 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 387 gtcattttcaatgatgtctg 406 |||||||||||||||||||| Sbjct: 74829 gtcattttcaatgatgtctg 74810
>gb|AC135958.2| Oryza sativa chromosome 3 BAC OSJNBa0059E14 genomic sequence, complete sequence Length = 154555 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 257 ccgccatcgagtccgccgcggccg 280 |||||||||||||||||| ||||| Sbjct: 150321 ccgccatcgagtccgccgtggccg 150344 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 catcgagtccgccgcggccg 280 |||||||||||||||||||| Sbjct: 150251 catcgagtccgccgcggccg 150270 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 catcgagtccgccgcggccg 280 |||||||||||||||||||| Sbjct: 150220 catcgagtccgccgcggccg 150239
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 26 tctccctcctctcgccctcccacc 49 |||||||||||||| ||||||||| Sbjct: 24017707 tctccctcctctcgtcctcccacc 24017730 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 27 ctccctcctctcgccctcccacct 50 |||||||||||| ||||||||||| Sbjct: 13923081 ctccctcctctccccctcccacct 13923104 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 27 ctccctcctctcgccctcccacct 50 |||||||||||| ||||||||||| Sbjct: 13881354 ctccctcctctccccctcccacct 13881377
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 catcgagtccgccgcggccg 280 |||||||||||||||||||| Sbjct: 32228166 catcgagtccgccgcggccg 32228185
>gb|AC010147.11| Homo sapiens BAC clone RP11-356H17 from 2, complete sequence Length = 219086 Score = 40.1 bits (20), Expect = 5.8 Identities = 33/36 (91%), Gaps = 1/36 (2%) Strand = Plus / Plus Query: 17 ccacagccatctccctcctctcgcc-ctcccacctc 51 ||||||||||| |||||||||| || |||||||||| Sbjct: 128566 ccacagccatcaccctcctctctccactcccacctc 128601
>dbj|AP003239.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0403C05 Length = 151085 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 catcgagtccgccgcggccg 280 |||||||||||||||||||| Sbjct: 98919 catcgagtccgccgcggccg 98938
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 5.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 250 gcccgcgccgccatcgagtccgccgcggccga 281 ||||||||||||||||| |||||||||||| Sbjct: 7507606 gcccgcgccgccatcgacctcgccgcggccga 7507637
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome Length = 3052398 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 241 atcgcgcgcgcccgcgccgccatc 264 ||||| |||||||||||||||||| Sbjct: 2643754 atcgcccgcgcccgcgccgccatc 2643777
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 243 cgcgcgcgcccgcgccgcca 262 |||||||||||||||||||| Sbjct: 1978390 cgcgcgcgcccgcgccgcca 1978409
>gb|AC073165.7|AC073165 Homo sapiens chromosome 5 clone RP11-54E9, complete sequence Length = 152869 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 tctccctcctctcgccctcc 45 |||||||||||||||||||| Sbjct: 56744 tctccctcctctcgccctcc 56725
>dbj|AP003750.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1174_G05 Length = 111202 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 26 tctccctcctctcgccctcccacc 49 |||||||||||||| ||||||||| Sbjct: 59315 tctccctcctctcgtcctcccacc 59338
>dbj|AP005911.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0040C06 Length = 158875 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 27 ctccctcctctcgccctcccacct 50 |||||||||||| ||||||||||| Sbjct: 42202 ctccctcctctccccctcccacct 42225 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 27 ctccctcctctcgccctcccacct 50 |||||||||||| ||||||||||| Sbjct: 475 ctccctcctctccccctcccacct 498
>dbj|AP005690.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0052I14 Length = 168285 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 27 ctccctcctctcgccctcccacct 50 |||||||||||| ||||||||||| Sbjct: 166518 ctccctcctctccccctcccacct 166541
>gb|AE005003.1| Halobacterium sp. NRC-1 section 34 of 170 of the complete genome Length = 14379 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 258 cgccatcgagtccgccgcggccgacggc 285 ||||||||| |||| ||||||||||||| Sbjct: 2385 cgccatcgaatccggcgcggccgacggc 2412
>dbj|AB113399.1| Rattus norvegicus rCNR gene for cadherin-related neuronal receptor, exon cluster Length = 249555 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 346 gagtatgctgaggacattga 365 |||||||||||||||||||| Sbjct: 197887 gagtatgctgaggacattga 197868
>dbj|AK106122.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-E12, full insert sequence Length = 1870 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 catcgagtccgccgcggccg 280 |||||||||||||||||||| Sbjct: 479 catcgagtccgccgcggccg 460
>gb|AE003709.4| Drosophila melanogaster chromosome 3R, section 47 of 118 of the complete sequence Length = 222815 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 8 cagccacatccacagccatc 27 |||||||||||||||||||| Sbjct: 132922 cagccacatccacagccatc 132903
>emb|CR761701.2| Xenopus tropicalis finished cDNA, clone TGas136c19 Length = 824 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 297 gctcctcccggagatatgga 316 |||||||||||||||||||| Sbjct: 75 gctcctcccggagatatgga 94
>gb|AE003421.2| Drosophila melanogaster chromosome X, section 5 of 74 of the complete sequence Length = 304204 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 3 agccgcagccacatccacagccat 26 |||| ||||||||||||||||||| Sbjct: 88154 agccacagccacatccacagccat 88177
>gb|AF020713.1|AF020713 Bacteriophage SPBc2 complete genome Length = 134416 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 404 ctgatgttgctcgcagcttgcaaa 427 ||||| |||||||||||||||||| Sbjct: 65548 ctgatattgctcgcagcttgcaaa 65571
>emb|Z99115.2|BSUB0012 Bacillus subtilis complete genome (section 12 of 21): from 2207806 to 2409180 Length = 201375 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 404 ctgatgttgctcgcagcttgcaaa 427 ||||| |||||||||||||||||| Sbjct: 12292 ctgatattgctcgcagcttgcaaa 12269
>emb|AL031028.1|DMC56G7 Drosophila melanogaster cosmid clone 56G7 Length = 24492 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 3 agccgcagccacatccacagccat 26 |||| ||||||||||||||||||| Sbjct: 7347 agccacagccacatccacagccat 7370 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,622,484 Number of Sequences: 3902068 Number of extensions: 2622484 Number of successful extensions: 62766 Number of sequences better than 10.0: 61 Number of HSP's better than 10.0 without gapping: 63 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 61126 Number of HSP's gapped (non-prelim): 1639 length of query: 433 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 411 effective length of database: 17,147,199,772 effective search space: 7047499106292 effective search space used: 7047499106292 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
