ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast55e01 |
|---|---|
| Clone Library Name | barley_pub |
>PLMN_BOVIN (P06868) Plasminogen precursor (EC 3.4.21.7) [Contains: Plasmin| heavy chain A; Activation peptide; Plasmin heavy chain A, short form; Plasmin light chain B] Length = 812 Score = 30.0 bits (66), Expect = 1.5 Identities = 18/55 (32%), Positives = 22/55 (40%) Frame = +3 Query: 102 PEAGLRCPTAR*PRTHKGCWSIKTAGRWSWKSKSAKECVTTHLPNQLAPKMDGAE 266 P AGL R P K W T R W+ + K+C T AP+ G E Sbjct: 424 PNAGLTMNYCRNPDADKSPWCYTTDPRVRWEFCNLKKCSETPEQVPAAPQAPGVE 478
>SYQ_XYLFT (Q87DU6) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glutamine--tRNA| ligase) (GlnRS) Length = 580 Score = 26.6 bits (57), Expect(2) = 2.1 Identities = 9/15 (60%), Positives = 11/15 (73%) Frame = -2 Query: 220 VTHSLADFDFHDHRP 176 +THSL +F DHRP Sbjct: 231 ITHSLCTLEFEDHRP 245 Score = 21.6 bits (44), Expect(2) = 2.1 Identities = 9/23 (39%), Positives = 13/23 (56%) Frame = -1 Query: 77 LPKMAHLEHPIPWHDSPKQPSHP 9 LP +HL P+ P++PS P Sbjct: 256 LPNNSHLLKPLLDKGFPQEPSQP 278
>SYQ_XYLFA (Q9PDP1) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glutamine--tRNA| ligase) (GlnRS) Length = 580 Score = 26.6 bits (57), Expect(2) = 2.1 Identities = 9/15 (60%), Positives = 11/15 (73%) Frame = -2 Query: 220 VTHSLADFDFHDHRP 176 +THSL +F DHRP Sbjct: 231 ITHSLCTLEFEDHRP 245 Score = 21.6 bits (44), Expect(2) = 2.1 Identities = 9/23 (39%), Positives = 13/23 (56%) Frame = -1 Query: 77 LPKMAHLEHPIPWHDSPKQPSHP 9 LP +HL P+ P++PS P Sbjct: 256 LPNNSHLLKPLLDKGFPQEPSQP 278
>KRA61_SHEEP (Q02958) Keratin, glycine/tyrosine-rich of hair| Length = 82 Score = 28.9 bits (63), Expect = 3.4 Identities = 19/61 (31%), Positives = 24/61 (39%) Frame = +1 Query: 10 GWLGCFGESCHGIGCSKWAIFGKQNWRCGMNRKPGYGAQLRANLEPTKGVGRLRQQDGGH 189 G LGC S G+GC + +G R G GYG R+ G G G+ Sbjct: 9 GGLGCGSYSYGGLGCGYGSCYGSGFRRLGCGYGCGYGYGSRSLCGSGYGYGSRSLCGSGY 68 Query: 190 G 192 G Sbjct: 69 G 69
>ATS20_MOUSE (P59511) ADAMTS-20 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase with thrombospondin motifs 20) (ADAM-TS 20) (ADAM-TS20) Length = 1906 Score = 28.9 bits (63), Expect = 3.4 Identities = 15/35 (42%), Positives = 17/35 (48%) Frame = +3 Query: 120 CPTAR*PRTHKGCWSIKTAGRWSWKSKSAKECVTT 224 C PRTHK C S + SWK+ KEC T Sbjct: 1452 CSHLHKPRTHKACRSGRCP---SWKANKWKECSVT 1483
>NUP88_RAT (O08658) Nuclear pore complex protein Nup88 (Nucleoporin Nup88) (88| kDa nuclear pore complex protein) (Nucleoporin Nup84) Length = 742 Score = 28.9 bits (63), Expect = 3.4 Identities = 15/40 (37%), Positives = 21/40 (52%) Frame = +2 Query: 185 VMEVEIR*GVCNNSPAESTSPENGWR*SARPTPGHLGERH 304 V+ + +R G+ N SPAE+ P S P P HL R+ Sbjct: 22 VVFLRLREGLKNQSPAEADKPATSTSPSCPPLPPHLPTRN 61
>RS13_THEVO (Q97B96) 30S ribosomal protein S13P| Length = 171 Score = 28.5 bits (62), Expect = 4.4 Identities = 11/29 (37%), Positives = 18/29 (62%) Frame = +1 Query: 94 GMNRKPGYGAQLRANLEPTKGVGRLRQQD 180 G+ + GY R NL+PTK +G L++ + Sbjct: 54 GIGLRLGYAIAERLNLQPTKKIGELKEDE 82
>SAYP_DROME (Q9VWF2) Supporter of activation of yellow protein (Protein enhancer| of yellow 3) Length = 2006 Score = 28.5 bits (62), Expect = 4.4 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 5/47 (10%) Frame = +3 Query: 93 RDEPEAGLRCPTAR*PRTHKGCWSI--KTAGR---WSWKSKSAKECV 218 RD PEA +RC T R R H C + + GR ++W+ K C+ Sbjct: 1707 RDMPEAFIRCYTCR-KRVHPSCVDMPPRMVGRVRNYNWQCAGCKCCI 1752
>SYQ_CHRVO (Q7NX86) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glutamine--tRNA| ligase) (GlnRS) Length = 560 Score = 28.1 bits (61), Expect = 5.8 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 7/30 (23%) Frame = -2 Query: 220 VTHSLADFDFHDHRPA-------VLIDQHP 152 +THSL +F DHRP + I+ HP Sbjct: 227 ITHSLCSLEFEDHRPLYDWVLDNISIEHHP 256
>CCNL1_CHICK (Q5ZJP9) Cyclin-L1| Length = 534 Score = 28.1 bits (61), Expect = 5.8 Identities = 17/37 (45%), Positives = 20/37 (54%) Frame = +2 Query: 14 GSAASVSRATESGAPSGPFLVSRTGDAG*TGSRVTVP 124 GSAA+V+ A G P+GP T A TGS VP Sbjct: 6 GSAAAVA-AVAGGGPAGPHAAGVTAGAVTTGSGAPVP 41
>OPA1_MOUSE (P58281) Dynamin-like 120 kDa protein, mitochondrial precursor| (Large GTP-binding protein) (LargeG) Length = 960 Score = 28.1 bits (61), Expect = 5.8 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%) Frame = +3 Query: 180 RWS-WKSKSAKECVTTHLPNQLAPKMDGAEARDPHPAIWAS 299 RW WK+++ ++CV N+L + + D HPA AS Sbjct: 774 RWMYWKNRTQEQCVHNETKNELEKML---KVNDEHPAYLAS 811
>CYSH_NEIMA (Q9JUD5) Phosphoadenosine phosphosulfate reductase (EC 1.8.4.8)| (PAPS reductase, thioredoxin dependent) (PAdoPS reductase) (3'-phosphoadenylylsulfate reductase) (PAPS sulfotransferase) Length = 244 Score = 28.1 bits (61), Expect = 5.8 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = +3 Query: 174 AGRWSWKSKSAKEC 215 AGRW W+ K++KEC Sbjct: 227 AGRWWWEDKNSKEC 240
>FINC_PLEWA (Q91289) Fibronectin (FN) (Fragment)| Length = 1328 Score = 27.7 bits (60), Expect = 7.6 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = +1 Query: 43 GIGCSKWAIFGKQNWRCGMNRKPGYG 120 G CS G+Q WRC R+PG G Sbjct: 1265 GAICSCTCYGGQQGWRCDNCRRPGAG 1290
>NETR_TRAPH (Q5G266) Neurotrypsin precursor (EC 3.4.21.-)| Length = 875 Score = 27.7 bits (60), Expect = 7.6 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 6/55 (10%) Frame = +1 Query: 22 CFGESCHGIGCSK----WAIFGKQNW--RCGMNRKPGYGAQLRANLEPTKGVGRL 168 C G+S + C + WA++G +W CG+ PG ++ A + K V +L Sbjct: 821 CQGDSGGPLMCERPGESWAVYGVTSWGYGCGVKDSPGVYTKVSAFVPWIKSVTKL 875
>NETR_MACMU (Q5G267) Neurotrypsin precursor (EC 3.4.21.-)| Length = 875 Score = 27.7 bits (60), Expect = 7.6 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 6/55 (10%) Frame = +1 Query: 22 CFGESCHGIGCSK----WAIFGKQNW--RCGMNRKPGYGAQLRANLEPTKGVGRL 168 C G+S + C + WA++G +W CG+ PG ++ A + K V +L Sbjct: 821 CQGDSGGPLMCERPGESWAVYGVTSWGYGCGVKDSPGVYTKVSAFVPWIKSVTKL 875
>ZBT34_HUMAN (Q8NCN2) Zinc finger and BTB domain-containing protein 34| Length = 500 Score = 27.7 bits (60), Expect = 7.6 Identities = 15/42 (35%), Positives = 20/42 (47%) Frame = +1 Query: 91 CGMNRKPGYGAQLRANLEPTKGVGRLRQQDGGHGSRNPLRSV 216 C R+P + LR P+K + R R Q+ GH R SV Sbjct: 168 CSQGRQPTASSDLRMETTPSKAL-RSRLQEEGHSDRGSSGSV 208
>YADA_YERPS (P10858) Adhesin yadA precursor| Length = 432 Score = 27.3 bits (59), Expect = 9.9 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 6/39 (15%) Frame = -3 Query: 102 VHPASPVLLTKN------GPLGAPDSVARLTEAAEPSYL 4 ++PA P+L +N GP G ARL EA +P L Sbjct: 55 LYPAKPILRQENPKLPPRGPQGPEKKRARLAEAIQPQVL 93
>MPA5A_LOLPR (Q40240) Major pollen allergen Lol p 5a precursor (Lol p Va) (Lol p| Ib) Length = 308 Score = 27.3 bits (59), Expect = 9.9 Identities = 16/36 (44%), Positives = 19/36 (52%) Frame = -2 Query: 109 ASGSSRIASSAYQKWPTWSTRFRGTTHRSSRAILPT 2 A G R+AS Q WP T R T+ RSSR P+ Sbjct: 60 AGGRQRLASR--QPWPPLPTPLRRTSSRSSRPPSPS 93 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,989,242 Number of Sequences: 219361 Number of extensions: 1097907 Number of successful extensions: 3044 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 2938 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3043 length of database: 80,573,946 effective HSP length: 81 effective length of database: 62,805,705 effective search space used: 1507336920 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
