ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast55d12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CXM3A_CONSE (P60207) Mu-conotoxin SmIIIA precursor (Fragment) 30 2.3
2KR171_HUMAN (Q9BYP8) Keratin-associated protein 17-1 (Keratin as... 30 4.0
3CFC1_MOUSE (P97766) Cryptic protein precursor 29 5.2
4SETB1_HUMAN (Q15047) Histone-lysine N-methyltransferase, H3 lysi... 28 8.9
5SCA4_RICRH (Q9AJ81) Antigenic heat-stable 120 kDa protein (PS120... 28 8.9

>CXM3A_CONSE (P60207) Mu-conotoxin SmIIIA precursor (Fragment)|
          Length = 31

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = +3

Query: 117 GRRGCGAGSTPAWC*ASSRCCGR 185
           GRRGC +     WC   SRCCGR
Sbjct: 12  GRRGCSS----RWCRDHSRCCGR 30



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>KR171_HUMAN (Q9BYP8) Keratin-associated protein 17-1 (Keratin associated|
           protein 16.1)
          Length = 105

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 15/33 (45%), Positives = 16/33 (48%)
 Frame = +3

Query: 93  GDRCEGWMGRRGCGAGSTPAWC*ASSRCCGRWC 191
           G  C G  G  GCG G   + C  SS CCG  C
Sbjct: 59  GSGCGGCGGCGGCGGGCCGSSCCGSS-CCGSGC 90



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>CFC1_MOUSE (P97766) Cryptic protein precursor|
          Length = 202

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 15/34 (44%), Positives = 15/34 (44%)
 Frame = +3

Query: 78  PGYSAGDRCEGWMGRRGCGAGSTPAWC*ASSRCC 179
           P Y  G  CE    RR CGA    AW   S R C
Sbjct: 114 PAYFTGRYCEHDQRRRDCGALGHGAWTLHSCRLC 147



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>SETB1_HUMAN (Q15047) Histone-lysine N-methyltransferase, H3 lysine-9 specific 4|
            (EC 2.1.1.43) (Histone H3-K9 methyltransferase 4)
            (H3-K9-HMTase 4) (SET domain bifurcated 1)
            (ERG-associated protein with SET domain) (ESET)
          Length = 1291

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 174  TAMRLSTTPELSPPHTPDDPSIP 106
            T  + S  P+L PPH P  PSIP
Sbjct: 942  TTSKDSHPPDLGPPHIPVPPSIP 964



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>SCA4_RICRH (Q9AJ81) Antigenic heat-stable 120 kDa protein (PS120) (120 kDa|
           antigen) (Protein PS 120) (Fragment)
          Length = 1013

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +1

Query: 55  EKRRTLRGQATPPEIDARDGWVVGGVGRAQLRRGAEPHRGAVDGGV 192
           ++++ L  Q T PE++A DG++V     AQ    + P   A+ G +
Sbjct: 23  QEQKELLSQTTTPELEADDGFIVTSASSAQ----STPSISALSGNI 64


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,048,670
Number of Sequences: 219361
Number of extensions: 595405
Number of successful extensions: 2852
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2850
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 3026354448
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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