ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast55d11 |
|---|---|
| Clone Library Name | barley_pub |
>PGKC_TRYBB (P07378) Phosphoglycerate kinase, glycosomal (EC 2.7.2.3)| (Phosphoglycerate kinase C) Length = 440 Score = 30.0 bits (66), Expect = 2.5 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 3/48 (6%) Frame = -1 Query: 423 TVGDVGQQIGNGPAEV--VVPWGL-TLLLIEVMERGPLRHGTISFLGG 289 T+G I NGP V +VP+ T + + M RG HG +S +GG Sbjct: 328 TIGKCKSAIWNGPMGVFEMVPYSKGTFAIAKAMGRGTHEHGLMSIIGG 375
>PGKB_TRYBB (P07377) Phosphoglycerate kinase, cytosolic (EC 2.7.2.3)| (Phosphoglycerate kinase B) (PGK B allele 2) Length = 421 Score = 30.0 bits (66), Expect = 2.5 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 3/48 (6%) Frame = -1 Query: 423 TVGDVGQQIGNGPAEV--VVPWGL-TLLLIEVMERGPLRHGTISFLGG 289 T+G I NGP V +VP+ T + + M RG HG +S +GG Sbjct: 329 TIGKCKSAIWNGPMGVFEMVPYSKGTFAIAKAMGRGTHEHGLMSIIGG 376
>PGKE_TRYBB (P08893) Phosphoglycerate kinase, cytosolic (EC 2.7.2.3)| (Phosphoglycerate kinase B) (PGK B allele 4) Length = 420 Score = 30.0 bits (66), Expect = 2.5 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 3/48 (6%) Frame = -1 Query: 423 TVGDVGQQIGNGPAEV--VVPWGL-TLLLIEVMERGPLRHGTISFLGG 289 T+G I NGP V +VP+ T + + M RG HG +S +GG Sbjct: 328 TIGKCKSAIWNGPMGVFEMVPYSKGTFAIAKAMGRGTHEHGLMSIIGG 375
>IF2_NOCFA (Q5YSC6) Translation initiation factor IF-2| Length = 969 Score = 30.0 bits (66), Expect = 2.5 Identities = 14/32 (43%), Positives = 16/32 (50%) Frame = +1 Query: 40 TSQQPPCRERPTSRPPLTNPAPGPGSRAAMAG 135 +SQ P RERP +RP P PGP G Sbjct: 184 SSQPAPERERPAARPGPGGPRPGPAQGGPRPG 215
>IF2_BRAJA (Q89WA9) Translation initiation factor IF-2| Length = 902 Score = 29.6 bits (65), Expect = 3.3 Identities = 34/125 (27%), Positives = 47/125 (37%), Gaps = 13/125 (10%) Frame = +1 Query: 1 RKEEGEIRAQLR*TSQQPPCRERPTSRPPLTNPAPGPGSRAAMAGTVXXXXXXXXXXXXX 180 RK E E + + +QP RP + P PAP PG+ AA GT Sbjct: 162 RKAETEAKKRFG-EGEQPASAARPATAAPAA-PAPRPGAPAARPGTTTTRPGTTTARPAT 219 Query: 181 XXSQ-----SLRSAALAFAP----SARRFRVSLAGRARSPVIAMASAKEG----NGAVTK 321 +Q + R A+A P + R+ R G AR + K G G +T Sbjct: 220 TTAQRPGAPAGRGPAVAAEPDEDEAPRQIRRGPGGAARPAPPPKTTHKPGPQKERGRLTV 279 Query: 322 RTTLH 336 T L+ Sbjct: 280 VTALN 284
>TRI31_HUMAN (Q9BZY9) Tripartite motif protein 31| Length = 425 Score = 28.9 bits (63), Expect = 5.7 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 2/43 (4%) Frame = +1 Query: 220 APSARRFRVSLAGRARSPVIAMASAKE--GNGAVTKRTTLHDL 342 APS FR S AG+ PV +AS E G GA ++ T D+ Sbjct: 356 APSHSLFRASSAGKVTFPVCLLASYDEISGQGASSQDTKTFDV 398
>PALF_NEUCR (Q7SGZ5) pH-response regulator protein palF/rim-8| Length = 927 Score = 28.9 bits (63), Expect = 5.7 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 3/58 (5%) Frame = +1 Query: 244 VSLAGRARSPVIAMASA---KEGNGAVTKRTTLHDLYEQQGQSPWYDNLCRPVTDLLP 408 V++ G SPV+A ASA G+G V HD +QGQ D+ P + LP Sbjct: 872 VTVVGNPSSPVLAPASAFFPASGSGNV------HDSPREQGQQARSDSSSPPPIEYLP 923
>SFPQ_MOUSE (Q8VIJ6) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) Length = 699 Score = 28.5 bits (62), Expect = 7.4 Identities = 11/25 (44%), Positives = 13/25 (52%) Frame = +1 Query: 40 TSQQPPCRERPTSRPPLTNPAPGPG 114 +S PP P + PP T PGPG Sbjct: 118 SSAPPPAVSAPPANPPTTGAPPGPG 142
>Y508_MYCBO (P64716) Hypothetical protein Mb0508| Length = 310 Score = 28.5 bits (62), Expect = 7.4 Identities = 13/33 (39%), Positives = 19/33 (57%) Frame = -2 Query: 299 SLAEAIAMTGLLARPARETRKRRAEGAKASAAE 201 S+AE +A G+ PAR R+RR + + AE Sbjct: 17 SVAELLARQGVTGAPARRRRRRRGDSDAITVAE 49
>Y497_MYCTU (P64715) Hypothetical protein Rv0497/MT0517| Length = 310 Score = 28.5 bits (62), Expect = 7.4 Identities = 13/33 (39%), Positives = 19/33 (57%) Frame = -2 Query: 299 SLAEAIAMTGLLARPARETRKRRAEGAKASAAE 201 S+AE +A G+ PAR R+RR + + AE Sbjct: 17 SVAELLARQGVTGAPARRRRRRRGDSDAITVAE 49
>PPHLN_HUMAN (Q8NEY8) Periphilin-1 (Gastric cancer antigen Ga50)| Length = 458 Score = 28.5 bits (62), Expect = 7.4 Identities = 14/35 (40%), Positives = 21/35 (60%) Frame = -2 Query: 302 PSLAEAIAMTGLLARPARETRKRRAEGAKASAAER 198 PS A++ + +L +P+R T K AE A AAE+ Sbjct: 206 PSSGSAVSSSKVLDKPSRLTEKELAEAASKWAAEK 240
>FA62A_PONPY (Q5RAG2) Protein FAM62A| Length = 1104 Score = 28.1 bits (61), Expect = 9.7 Identities = 12/31 (38%), Positives = 15/31 (48%) Frame = +1 Query: 43 SQQPPCRERPTSRPPLTNPAPGPGSRAAMAG 135 + QP PT +PP + P PGS AG Sbjct: 14 TDQPSAPSDPTGQPPAAHAKPDPGSGGQPAG 44
>SCND2_HUMAN (Q9GZW5) SCAN domain-containing protein 2| Length = 306 Score = 28.1 bits (61), Expect = 9.7 Identities = 35/127 (27%), Positives = 47/127 (37%), Gaps = 4/127 (3%) Frame = +1 Query: 1 RKEEGEIRAQLR*TSQQPPCRERPTS-RPPLTNPAPGPGSRAAMAGTVXXXXXXXXXXXX 177 +KE G R + R +P R P R P A GP SRA + T Sbjct: 124 QKEPGRQRLEPR---ARPSGRTPPAQLRSPWPMTAAGPASRARASET---------GSTA 171 Query: 178 XXXSQSLRSAALAFAPSARRFRVSLAGRARSPVIAMASAKEG-NGAVTKRTTLHDLYEQQ 354 + A A APSA R + GR+ S A A GA+T+ +++ Sbjct: 172 SCAGRWRTCCAAAAAPSAARSASARTGRSTSSCARAARAPSATEGALTRTPAPRRPLQRR 231 Query: 355 --GQSPW 369 G PW Sbjct: 232 RPGTGPW 238
>TRPD_PELLD (Q3B2H3) Anthranilate phosphoribosyltransferase (EC 2.4.2.18)| Length = 351 Score = 28.1 bits (61), Expect = 9.7 Identities = 16/44 (36%), Positives = 22/44 (50%) Frame = +1 Query: 226 SARRFRVSLAGRARSPVIAMASAKEGNGAVTKRTTLHDLYEQQG 357 SA F +S A + ++ AK GN AVT R D+ E+ G Sbjct: 85 SAGTFNISTAAAIIANAAGVSIAKHGNRAVTSRCGSADVLEELG 128 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 44,830,005 Number of Sequences: 219361 Number of extensions: 707851 Number of successful extensions: 3981 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 3378 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3959 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2511994855 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
