ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast55d04 |
|---|---|
| Clone Library Name | barley_pub |
>UBE4B_HUMAN (O95155) Ubiquitin conjugation factor E4 B (Ubiquitin-fusion| degradation protein 2) (Homozygously deleted in neuroblastoma 1) Length = 1302 Score = 35.8 bits (81), Expect = 0.053 Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 5/58 (8%) Frame = +2 Query: 152 ESAQKP*PA--AQLPMAANSNPSPSAGGD---VPTPALPPVRLAAGQAATIQPSSPRY 310 ES+ P P+ + +P+ S SPS VP+ L P A+G AA QPSSPRY Sbjct: 273 ESSPAPTPSFWSSVPVMGPSLASPSRAASQLAVPSTPLSPHSAASGTAAGSQPSSPRY 330
>SAM68_RAT (Q91V33) KH domain-containing, RNA-binding, signal| transduction-associated protein 1 (p21 Ras GTPase-activating protein-associated p62) (GAP-associated tyrosine phosphoprotein p62) (Src-associated in mitosis 68 kDa protein) (Sam68) (p68) Length = 443 Score = 33.1 bits (74), Expect = 0.34 Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 3/59 (5%) Frame = +2 Query: 173 PAAQLP-MAANSNPSPSAG--GDVPTPALPPVRLAAGQAATIQPSSPRYFFSSLAGKDA 340 PA Q P + SNP P A G PTP LPP +A AA ++P + +Y +A KD+ Sbjct: 59 PATQPPPLLPPSNPGPDATVVGSAPTPLLPP---SATAAAKMEPEN-KYLPELMAEKDS 113
>IF2_NOCFA (Q5YSC6) Translation initiation factor IF-2| Length = 969 Score = 32.3 bits (72), Expect = 0.58 Identities = 21/55 (38%), Positives = 23/55 (41%), Gaps = 1/55 (1%) Frame = +2 Query: 146 REESAQKP*PAAQLPMAANSNPSPSAGGDVPTP-ALPPVRLAAGQAATIQPSSPR 307 RE A +P P P A P P G P P A P R AA Q +P PR Sbjct: 191 RERPAARPGPGGPRPGPAQGGPRPGPGQGAPRPGATPGPRPAAAQGGP-RPGGPR 244
>FMNL_MOUSE (Q9JL26) Formin-like 1 protein (Formin-related protein)| Length = 1094 Score = 28.9 bits (63), Expect(2) = 1.0 Identities = 17/55 (30%), Positives = 22/55 (40%) Frame = +2 Query: 140 TRREESAQKP*PAAQLPMAANSNPSPSAGGDVPTPALPPVRLAAGQAATIQPSSP 304 +++E P A LP A P+P GD+P P PP G P P Sbjct: 553 SQQEAPPSAPPLAPPLPGCAEPPPAPPLPGDLPPPPPPPPLGTDGPVPPPPPPPP 607 Score = 21.2 bits (43), Expect(2) = 1.0 Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 1/25 (4%) Frame = +3 Query: 33 PAYSLD-PSISNQNLQSASPHPTPP 104 P S D PS + ++ASP P PP Sbjct: 518 PRVSTDSPSTAESIPEAASPPPPPP 542
>Y091_NPVAC (P41479) Hypothetical 24.1 kDa protein in LEF4-P33 intergenic| region Length = 224 Score = 31.2 bits (69), Expect = 1.3 Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 5/84 (5%) Frame = +2 Query: 173 PAAQLPMAANSNPSPSAGGDVPTPALPPVRLAAGQAATIQPS-----SPRYFFSSLAGKD 337 P + +P +P PS PTP+ PP + + PS P Y+ S++ + Sbjct: 94 PPSPIPPTPTPSPPPSPIPPTPTPSPPPSPIPPTPTPSPPPSPSPLGEPMYYPSNIDTNE 153 Query: 338 ASSHHRRIAIAVDLSDESAFAVRW 409 A + R A D + + +AV W Sbjct: 154 ALINFLRPLCATDRT-RATYAVPW 176
>YFK5_SCHPO (P87132) Hypothetical protein C167.05 in chromosome I| Length = 601 Score = 30.8 bits (68), Expect = 1.7 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%) Frame = +2 Query: 338 ASSHHRRIA--IAVDLSDESAFAVRWAVQNYLRPGDAVVLL 454 ASS R + +DLS ES A WAV LR GD ++++ Sbjct: 424 ASSSKRNCTYFLTLDLSSESLHAAEWAVGILLRNGDTLIIV 464
>POP1_HUMAN (Q99575) Ribonucleases P/MRP protein subunit POP1 (EC 3.1.26.5)| (hPOP1) Length = 1024 Score = 30.8 bits (68), Expect = 1.7 Identities = 14/32 (43%), Positives = 20/32 (62%) Frame = +3 Query: 81 ASPHPTPPRIKSATEKSRNKLGEKSQRKNPSQ 176 A P PTP + KS TE K+G+K +RK+ + Sbjct: 360 ADPLPTPSQEKSQTELPDEKIGKKRKRKDDGE 391
>BAZ2A_HUMAN (Q9UIF9) Bromodomain adjacent to zinc finger domain 2A (Transcription| termination factor I-interacting protein 5) (TTF-I-interacting protein 5) (Tip5) (hWALp3) Length = 1878 Score = 30.8 bits (68), Expect = 1.7 Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 12/79 (15%) Frame = +2 Query: 131 PE*TRREESAQKP*P-------AAQLPMAANSNPSPSAGGDVPTPALPPVRLAA----GQ 277 PE +E+ P P +AQ+P A P P+ D PTP+ P +LA+ + Sbjct: 1278 PEEPEPDEAESSPDPQALWFNISAQMPCNAAPTPPPAVSEDQPTPS--PQQLASSKPMNR 1335 Query: 278 AATIQPSSPRYFFSS-LAG 331 + P SP F S+ LAG Sbjct: 1336 PSAANPCSPVQFSSTPLAG 1354
>SECD_MYCTU (Q50634) Protein-export membrane protein secD| Length = 573 Score = 30.0 bits (66), Expect = 2.9 Identities = 17/53 (32%), Positives = 22/53 (41%) Frame = +3 Query: 18 PSFHPPAYSLDPSISNQNLQSASPHPTPPRIKSATEKSRNKLGEKSQRKNPSQ 176 P P Y DP+ S ASP P PP AT+ ++ +Q K Q Sbjct: 164 PGAQPRPYPQDPAPSPNPTSPASPPPAPPAEAPATDPRKDLAERIAQEKKLRQ 216
>SAM68_HUMAN (Q07666) KH domain-containing, RNA-binding, signal| transduction-associated protein 1 (p21 Ras GTPase-activating protein-associated p62) (GAP-associated tyrosine phosphoprotein p62) (Src-associated in mitosis 68 kDa protein) (Sam68) (p68) Length = 443 Score = 30.0 bits (66), Expect = 2.9 Identities = 19/56 (33%), Positives = 30/56 (53%) Frame = +2 Query: 173 PAAQLPMAANSNPSPSAGGDVPTPALPPVRLAAGQAATIQPSSPRYFFSSLAGKDA 340 P LP +A + P + GG PTP LPP +A + ++P + +Y +A KD+ Sbjct: 63 PPPLLPPSA-TGPDATVGGPAPTPLLPP---SATASVKMEPEN-KYLPELMAEKDS 113
>IF2_XANOR (Q5GXU9) Translation initiation factor IF-2| Length = 906 Score = 30.0 bits (66), Expect = 2.9 Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 7/73 (9%) Frame = +2 Query: 107 DQIRHREIPE*TRREESAQKP*P-----AAQLPMAANSNPSPSAGGDVPTP--ALPPVRL 265 D++R EI R EE A K AA+ AA S P+P+ PTP A P R Sbjct: 148 DRVRDEEIQR-KRDEEQAAKDRAEAERKAAEEAAAAASAPAPAPVAAAPTPSAAAPAARA 206 Query: 266 AAGQAATIQPSSP 304 + ++ +PS P Sbjct: 207 PSSPSSAPRPSRP 219
>GBF1_HUMAN (Q92538) Golgi-specific brefeldin A-resistance guanine nucleotide| exchange factor 1 (BFA-resistant GEF 1) Length = 1859 Score = 30.0 bits (66), Expect = 2.9 Identities = 24/71 (33%), Positives = 30/71 (42%), Gaps = 3/71 (4%) Frame = +2 Query: 173 PAAQLPMAANSNPSPSAGGDVPTPALPP---VRLAAGQAATIQPSSPRYFFSSLAGKDAS 343 P Q P+A S SA GD TP PP + G +P SPR SS G + Sbjct: 1730 PQGQKPLA--SAHLTSAAGDTRTPGHPPPPEIPSELGACDFEKPESPRAASSSSPGSPVA 1787 Query: 344 SHHRRIAIAVD 376 S R++ D Sbjct: 1788 SSPSRLSPTPD 1798
>MECT1_HUMAN (Q6UUV9) Mucoepidermoid carcinoma translocated protein 1| (Transducer of regulated cAMP response element-binding protein 1) (Transducer of CREB protein 1) Length = 634 Score = 30.0 bits (66), Expect = 2.9 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 2/44 (4%) Frame = +2 Query: 179 AQLPMAANSNPS-PSAGGDVPT-PALPPVRLAAGQAATIQPSSP 304 + LP + NP PS G D+ + PAL R +AG A P+SP Sbjct: 419 SSLPQSPPENPGQPSMGIDIASAPALQQYRTSAGSPANQSPTSP 462
>TATB_PSEAE (Q9HUB4) Sec-independent protein translocase protein tatB homolog| Length = 141 Score = 30.0 bits (66), Expect = 2.9 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 2/57 (3%) Frame = +2 Query: 140 TRREESAQKP*PAAQLPMAANSNPSPSAGGDVPTPALPPVRLAA--GQAATIQPSSP 304 T + + P PAA+ P + P P++ TPA+PP AA AA+ PS P Sbjct: 83 TGQNPPQETPPPAAESPAPSVPTPPPTS-----TPAVPPADAAAPPAVAASTPPSPP 134
>YCX1_CHLRE (P05723) Hypothetical 12.2 kDa protein in 16S rRNA region| Length = 111 Score = 29.6 bits (65), Expect = 3.8 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 2/63 (3%) Frame = +2 Query: 206 NPSPSA--GGDVPTPALPPVRLAAGQAATIQPSSPRYFFSSLAGKDASSHHRRIAIAVDL 379 NP P A G +P P +PPV T PS PR F+S A K S ++ + Sbjct: 48 NPIPLAVMRGGIPLPGMPPV-------PTATPSLPRSGFTSSAKKIKESRKQKSTALQAV 100 Query: 380 SDE 388 D+ Sbjct: 101 KDQ 103
>IF2_XANC8 (Q4UWA2) Translation initiation factor IF-2| Length = 902 Score = 29.6 bits (65), Expect = 3.8 Identities = 30/106 (28%), Positives = 44/106 (41%) Frame = +2 Query: 122 REIPE*TRREESAQKP*PAAQLPMAANSNPSPSAGGDVPTPALPPVRLAAGQAATIQPSS 301 R+ E SA P AA P +A + +PS+ P PA P A + AT P+ Sbjct: 173 RKAAEEAAAAASAPAPVAAAPAPSSAPAARAPSSPSSAPRPARPAGASPASRPAT--PAR 230 Query: 302 PRYFFSSLAGKDASSHHRRIAIAVDLSDESAFAVRWAVQNYLRPGD 439 P ++ K SH + + D+ A R+A Q +L D Sbjct: 231 PDDRNNAAKHKTRGSH----VMVAGVEDDDA-TKRFAGQLHLSAAD 271
>SWC4_NEUCR (Q870Q1) SWR1-complex protein 4| Length = 771 Score = 29.6 bits (65), Expect = 3.8 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 3/57 (5%) Frame = +2 Query: 191 MAANSNPSPSAGGDVPTPALPPVRLAAGQAATIQPSSPR---YFFSSLAGKDASSHH 352 MA + P+A T ALPP A A + P++ R SS AG A+ HH Sbjct: 336 MAPENGVPPAAAAAAATAALPPAAAAVAAAPEVPPAASRRESLAASSTAG--ANDHH 390
>RERE_RAT (Q62901) Arginine-glutamic acid dipeptide repeats protein| (Atrophin-1-related protein) Length = 1559 Score = 29.6 bits (65), Expect = 3.8 Identities = 15/31 (48%), Positives = 17/31 (54%) Frame = +3 Query: 9 PFLPSFHPPAYSLDPSISNQNLQSASPHPTP 101 P LPS HPP L P + + SA PHP P Sbjct: 808 PRLPSPHPP---LQPMTAPPSQNSAQPHPQP 835
>IF2_XANCP (Q8P7U7) Translation initiation factor IF-2| Length = 916 Score = 29.6 bits (65), Expect = 3.8 Identities = 30/106 (28%), Positives = 44/106 (41%) Frame = +2 Query: 122 REIPE*TRREESAQKP*PAAQLPMAANSNPSPSAGGDVPTPALPPVRLAAGQAATIQPSS 301 R+ E SA P AA P +A + +PS+ P PA P A + AT P+ Sbjct: 187 RKAAEEAAAAASAPAPVAAAPAPSSAPAARAPSSPSSAPRPARPAGASPASRPAT--PAR 244 Query: 302 PRYFFSSLAGKDASSHHRRIAIAVDLSDESAFAVRWAVQNYLRPGD 439 P ++ K SH + + D+ A R+A Q +L D Sbjct: 245 PDDRNNAAKHKTRGSH----VMVAGVEDDDA-TKRFAGQLHLSAAD 285
>RERE_MOUSE (Q80TZ9) Arginine-glutamic acid dipeptide repeats protein| (Atrophin-2) Length = 1558 Score = 29.6 bits (65), Expect = 3.8 Identities = 15/31 (48%), Positives = 17/31 (54%) Frame = +3 Query: 9 PFLPSFHPPAYSLDPSISNQNLQSASPHPTP 101 P LPS HPP L P + + SA PHP P Sbjct: 809 PRLPSPHPP---LQPMTAPPSQSSAQPHPQP 836
>NEDD4_DROME (Q9VVI3) E3 ubiquitin-protein ligase Nedd-4 (EC 6.3.2.-) (DNedd4)| Length = 1007 Score = 29.6 bits (65), Expect = 3.8 Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 7/71 (9%) Frame = +2 Query: 176 AAQLPMAANSNPSPSAGGDVPTPALPPVRLA---AGQAATIQP----SSPRYFFSSLAGK 334 AA LP+ ++S S AGGDVP P PP R A AGQ T Q +PR +++ Sbjct: 11 AAALPVPSSS--SSVAGGDVPRP--PPRRRAASVAGQQQTRQEFGNGYTPRRSLAAVNDS 66 Query: 335 DASSHHRRIAI 367 S H R + + Sbjct: 67 GDSCHLRIVVL 77
>ROBO3_MOUSE (Q9Z2I4) Roundabout homolog 3 precursor (Retinoblastoma-inhibiting| gene 1) (Rig-1) Length = 1366 Score = 25.4 bits (54), Expect(2) = 4.6 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 4/31 (12%) Frame = +2 Query: 227 GDVPTPALPPV----RLAAGQAATIQPSSPR 307 GD+P P LPP +LA G A + Q PR Sbjct: 1265 GDLPPPPLPPPELRDKLALGSAGSRQHVFPR 1295 Score = 22.3 bits (46), Expect(2) = 4.6 Identities = 10/23 (43%), Positives = 12/23 (52%) Frame = +3 Query: 81 ASPHPTPPRIKSATEKSRNKLGE 149 ASP P P SA ++R GE Sbjct: 1215 ASPSPVPSTASSAPGRTRQVTGE 1237
>SRBS1_HUMAN (Q9BX66) Sorbin and SH3 domain-containing protein 1 (Ponsin)| (c-Cbl-associated protein) (CAP) (SH3 domain protein 5) (SH3P12) Length = 1292 Score = 26.9 bits (58), Expect(2) = 4.6 Identities = 11/30 (36%), Positives = 17/30 (56%) Frame = +2 Query: 224 GGDVPTPALPPVRLAAGQAATIQPSSPRYF 313 GGD+P L ++ + A+T SPR+F Sbjct: 688 GGDIPLQGLSGLKRPSSSASTKDSESPRHF 717 Score = 20.8 bits (42), Expect(2) = 4.6 Identities = 6/22 (27%), Positives = 13/22 (59%) Frame = +2 Query: 173 PAAQLPMAANSNPSPSAGGDVP 238 P+A +P ++ +P+P + P Sbjct: 629 PSANVPQSSAISPTPEISSETP 650
>ERF2_SCHPO (O74718) Eukaryotic peptide chain release factor GTP-binding| subunit (ERF2) (Translation release factor 3) (Polypeptide release factor 3) (ERF3) (ERF-3) Length = 662 Score = 26.6 bits (57), Expect(2) = 4.8 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 9/62 (14%) Frame = +3 Query: 3 ARPFLPSFHPPAYSLDPSI---------SNQNLQSASPHPTPPRIKSATEKSRNKLGEKS 155 A PF+PSF P + +I + Q S SPHPT + + + N + E Sbjct: 35 AAPFIPSFQRPGFVPVNNIAGGYPYAQYTGQGQNSNSPHPTKSYQQYYQKPTGNTVDEDK 94 Query: 156 QR 161 R Sbjct: 95 SR 96 Score = 21.2 bits (43), Expect(2) = 4.8 Identities = 14/52 (26%), Positives = 22/52 (42%) Frame = +2 Query: 236 PTPALPPVRLAAGQAATIQPSSPRYFFSSLAGKDASSHHRRIAIAVDLSDES 391 P PA+P ++ + T P S + SL G A + + A A E+ Sbjct: 109 PKPAIPKGKVLSLGGNTSAPKSTKPISISLGGTKAPTTTKPAAPAAQSKTET 160
>SAM68_MOUSE (Q60749) KH domain-containing, RNA-binding, signal| transduction-associated protein 1 (p21 Ras GTPase-activating protein-associated p62) (GAP-associated tyrosine phosphoprotein p62) (Src-associated in mitosis 68 kDa protein) (Sam68) (p68) Length = 443 Score = 29.3 bits (64), Expect = 4.9 Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 3/59 (5%) Frame = +2 Query: 173 PAAQLP-MAANSNPSPSAG--GDVPTPALPPVRLAAGQAATIQPSSPRYFFSSLAGKDA 340 PA Q P + S P P A G PTP LPP +A A ++P + +Y +A KD+ Sbjct: 59 PATQPPPLLPPSTPGPDATVVGSAPTPLLPP---SATAAVKMEPEN-KYLPELMAEKDS 113
>S12A2_SQUAC (P55013) Solute carrier family 12 member 2 (Bumetanide-sensitive| sodium-(potassium)-chloride cotransporter 1) (NA-K-CL symporter) (NKCC) Length = 1191 Score = 29.3 bits (64), Expect = 4.9 Identities = 13/36 (36%), Positives = 18/36 (50%) Frame = +2 Query: 173 PAAQLPMAANSNPSPSAGGDVPTPALPPVRLAAGQA 280 PA+ + + S P P AG P P P+R A Q+ Sbjct: 6 PASSAGVQSQSGPEPGAGQQEPPPPATPLRPVASQS 41
>NFAC1_HUMAN (O95644) Nuclear factor of activated T-cells, cytoplasmic 1 (NFAT| transcription complex cytosolic component) (NF-ATc1) (NF-ATc) Length = 943 Score = 29.3 bits (64), Expect = 4.9 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%) Frame = +2 Query: 173 PAAQLPMAANSNPSPSAGGDVPTPA-LPPVRLAAGQAATIQPSSPRYFFSS 322 PA LP A ++ P+P TP +PP +G A + YF SS Sbjct: 54 PALPLPTAHSTLPAPCHNLQTSTPGIIPPADHPSGYGAALDGGPAGYFLSS 104
>IF2_THEFY (Q47RV1) Translation initiation factor IF-2| Length = 955 Score = 29.3 bits (64), Expect = 4.9 Identities = 14/36 (38%), Positives = 23/36 (63%) Frame = +2 Query: 146 REESAQKP*PAAQLPMAANSNPSPSAGGDVPTPALP 253 +++ + KP P+ Q A++ PSAGG+ P PA+P Sbjct: 66 KKKPSPKPQPSPQQQTKASA---PSAGGETPRPAVP 98
>DMWD_MOUSE (Q08274) Dystrophia myotonica WD repeat-containing protein| (Dystrophia myotonica-containing WD repeat motif protein) (DMR-N9 protein) Length = 650 Score = 29.3 bits (64), Expect = 4.9 Identities = 24/56 (42%), Positives = 25/56 (44%), Gaps = 13/56 (23%) Frame = +2 Query: 140 TRRE--ESAQKP*P-----------AAQLPMAANSNPSPSAGGDVPTPALPPVRLA 268 TRR SAQ P P AA P AA SP G P PALP VRL+ Sbjct: 26 TRRSGPTSAQTPAPPQPTQPPPGPAAASGPGAAGPASSPPPAGPGPGPALPAVRLS 81
>POLS_WEEV (P13897) Structural polyprotein (p130) [Contains: Capsid protein| (EC 3.4.21.-) (Coat protein) (C); p62 (E3/E2); E3 protein (Spike glycoprotein E3); E2 envelope glycoprotein (Spike glycoprotein E2); 6K protein; E1 envelope glycoprotein (Spike gl Length = 1236 Score = 29.3 bits (64), Expect = 4.9 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 10/63 (15%) Frame = +3 Query: 6 RPFLPSFHPPAYSLDPSISNQNLQSASPHPTP----------PRIKSATEKSRNKLGEKS 155 RPF P L SI+N + SP+P P P+ K K + + +K+ Sbjct: 31 RPFRPPLAAQIEDLRRSIANLTFKQRSPNPPPGPPPKKKKSAPKPKPTQPKKKKQQAKKT 90 Query: 156 QRK 164 +RK Sbjct: 91 KRK 93
>BORG5_HUMAN (Q00587) Cdc42 effector protein 1 (Binder of Rho GTPases 5) (Serum| protein MSE55) Length = 391 Score = 29.3 bits (64), Expect = 4.9 Identities = 18/50 (36%), Positives = 23/50 (46%) Frame = +2 Query: 155 SAQKP*PAAQLPMAANSNPSPSAGGDVPTPALPPVRLAAGQAATIQPSSP 304 +A+ P PAA P A +NP+ A T A PP A A P+ P Sbjct: 221 AAETPAPAAN-PPAPTANPTGPAANPPATTANPPAPAANPSAPAATPTGP 269 Score = 29.3 bits (64), Expect = 4.9 Identities = 17/44 (38%), Positives = 22/44 (50%) Frame = +2 Query: 173 PAAQLPMAANSNPSPSAGGDVPTPALPPVRLAAGQAATIQPSSP 304 PAA+ P A + P+P+A P A PP A A PS+P Sbjct: 220 PAAETPAPAANPPAPTANPTGPA-ANPPATTANPPAPAANPSAP 262
>VGLC_VZVS (P10241) Glycoprotein GPV| Length = 591 Score = 29.3 bits (64), Expect = 4.9 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 8/65 (12%) Frame = +2 Query: 155 SAQKP*PAAQLPMAANSNPSP-----SAGGDVPTPALPPVRLAAGQ---AATIQPSSPRY 310 +++KP PA AA P P SA P PA+ P A + AA Q S P + Sbjct: 123 ASRKPDPAVAPTSAATRKPDPAVAPTSAATRNPDPAVAPTSAATRKPDPAANAQHSQPPF 182 Query: 311 FFSSL 325 F ++ Sbjct: 183 LFENI 187
>TONB_PSEAE (Q51368) Protein tonB| Length = 342 Score = 25.0 bits (53), Expect(2) = 5.1 Identities = 11/29 (37%), Positives = 15/29 (51%) Frame = +2 Query: 164 KP*PAAQLPMAANSNPSPSAGGDVPTPAL 250 KP P + A+S PSPS+ P P + Sbjct: 196 KPKPEPEPSTEASSQPSPSSAAPPPAPTV 224 Score = 22.7 bits (47), Expect(2) = 5.1 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%) Frame = +3 Query: 78 SASPHPTPPRIKS-ATEKSRNKLGEKSQRK 164 +A+P PTPP+I+ E + K EK + K Sbjct: 145 AAAPEPTPPKIEEPKPEPPKPKPVEKPKPK 174
>ARI1A_HUMAN (O14497) AT-rich interactive domain-containing protein 1A (ARID| domain-containing protein 1A) (SWI/SNF-related, matrix-associated, actin-dependent regulator of chromatin subfamily F member 1) (SWI-SNF complex protein p270) (B120) (SWI-like pr Length = 2285 Score = 28.9 bits (63), Expect = 6.4 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 5/59 (8%) Frame = +3 Query: 9 PFLPSFHPPA--YSLDPSISNQNLQSASPHPTPPRIKSATEKSRNKL---GEKSQRKNP 170 P P PP Y PS+ N Q +SP P P +++ T S++ G K Q+ P Sbjct: 1560 PVPPMTRPPPSNYQPPPSMQNHIPQVSSPAPLPRPMENRTSPSKSPFLHSGMKMQKAGP 1618
>Y2082_MYCTU (Q10690) Hypothetical protein Rv2082| Length = 721 Score = 28.9 bits (63), Expect = 6.4 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 5/44 (11%) Frame = +2 Query: 188 PMAANSNPSPSAGGDV-----PTPALPPVRLAAGQAATIQPSSP 304 P AA + P P+ G D+ PA PP A + PSSP Sbjct: 416 PAAAPAGPLPAYGADLRPPVTTPPATPPTPTGPISGAAVTPSSP 459
>MUTL_LACPL (Q88UZ8) DNA mismatch repair protein mutL| Length = 678 Score = 28.9 bits (63), Expect = 6.4 Identities = 23/71 (32%), Positives = 35/71 (49%) Frame = +2 Query: 182 QLPMAANSNPSPSAGGDVPTPALPPVRLAAGQAATIQPSSPRYFFSSLAGKDASSHHRRI 361 QL M N+ S D TPA A+ AAT+QPSS S+ + + ++ + R Sbjct: 349 QLAMDLNAVSSQYQVADKTTPASTEQFAASLAAATMQPSSATTMVSTTSAQPSAVN--RA 406 Query: 362 AIAVDLSDESA 394 A++ + ESA Sbjct: 407 AVSAVVPSESA 417
>CN032_BOVIN (Q5E9L3) Protein C14orf32 homolog| Length = 240 Score = 28.9 bits (63), Expect = 6.4 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 3/47 (6%) Frame = +2 Query: 173 PAAQLPMAANSNPSPSAGGDVPT---PALPPVRLAAGQAATIQPSSP 304 PA + ++ PSP G PT P++PP G A PS P Sbjct: 47 PAVPSGLPPSATPSPVPFGPTPTGMYPSVPPTGPPPGPPAPFPPSGP 93
>VGLC_VZVD (P09256) Glycoprotein GPV| Length = 560 Score = 28.9 bits (63), Expect = 6.4 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 8/65 (12%) Frame = +2 Query: 155 SAQKP*PAAQLPMAANSNPSP-----SAGGDVPTPALPPVRLAAGQ---AATIQPSSPRY 310 + +KP PA AA+ P P SA P PA+ P A+ + AA Q S P + Sbjct: 92 ATRKPDPAVAPTSAASRKPDPAVAPTSAATRKPDPAVAPTSAASRKPDPAANTQHSQPPF 151 Query: 311 FFSSL 325 + ++ Sbjct: 152 LYENI 156
>SO1C1_RAT (Q9EPZ7) Solute carrier organic anion transporter family member 1C1| (Solute carrier family 21 member 14) (Blood-brain barrier-specific anion transporter 1) (BBB-specific anion transporter type 1) Length = 716 Score = 28.9 bits (63), Expect = 6.4 Identities = 16/51 (31%), Positives = 29/51 (56%) Frame = +3 Query: 27 HPPAYSLDPSISNQNLQSASPHPTPPRIKSATEKSRNKLGEKSQRKNPSQL 179 + P+ +L P+IS L+S+SP P +S KS+NK+ ++ + S + Sbjct: 144 YSPSSNLTPNISPCYLESSSPSP-----RSIVGKSQNKINDECEVDTSSSM 189
>Y065_MYCBO (Q7U2X8) UPF0182 protein Mb0065| Length = 979 Score = 28.5 bits (62), Expect = 8.4 Identities = 14/29 (48%), Positives = 15/29 (51%) Frame = +2 Query: 197 ANSNPSPSAGGDVPTPALPPVRLAAGQAA 283 A S P P AGG P A+PP R AA Sbjct: 910 AASAPPPGAGGPAPPQAVPPPRTTQPPAA 938
>Y064_MYCTU (O53609) UPF0182 protein Rv0064/MT0070| Length = 979 Score = 28.5 bits (62), Expect = 8.4 Identities = 14/29 (48%), Positives = 15/29 (51%) Frame = +2 Query: 197 ANSNPSPSAGGDVPTPALPPVRLAAGQAA 283 A S P P AGG P A+PP R AA Sbjct: 910 AASAPPPGAGGPAPPQAVPPPRTTQPPAA 938
>TONB_VIBCH (O52042) Protein tonB| Length = 244 Score = 28.5 bits (62), Expect = 8.4 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 9/59 (15%) Frame = +2 Query: 146 REESAQKP*PAAQLPMAANSNPSP--------SAGGDVPTPALPPVR-LAAGQAATIQP 295 + ++ +KP PA Q+P + + P P +A PTP P + AA Q T QP Sbjct: 93 KPQTVKKPVPAEQVPSKSVAKPQPEKVERTAETAQKPAPTPNQQPSQPTAASQGITSQP 151
>SET1A_HUMAN (O15047) Histone-lysine N-methyltransferase, H3 lysine-4 specific| SET1 (EC 2.1.1.43) (Set1/Ash2 histone methyltransferase complex subunit SET1) (SET-domain-containing protein 1A) Length = 1707 Score = 28.5 bits (62), Expect = 8.4 Identities = 17/58 (29%), Positives = 26/58 (44%) Frame = +2 Query: 131 PE*TRREESAQKP*PAAQLPMAANSNPSPSAGGDVPTPALPPVRLAAGQAATIQPSSP 304 PE +R + +P PA++ P P GG P+P VR + A+ + SP Sbjct: 415 PEPSRPTDQDYRP-PASEAPPPEPPEPGGGGGGGGPSPEREEVRTSPRPASPARSGSP 471
>NUP53_XENTR (Q66IJ0) Nucleoporin NUP53 (Nuclear pore complex protein Nup53)| (Nucleoporin Nup35) (35 kDa nucleoporin) Length = 330 Score = 28.5 bits (62), Expect = 8.4 Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 11/45 (24%) Frame = +2 Query: 173 PAAQLPMAANS--NPSPSAG---------GDVPTPALPPVRLAAG 274 P PMA S +P PSAG GD+PTP P R + G Sbjct: 8 PMGAEPMALGSPTSPKPSAGAQFLPGFLLGDIPTPVTPQQRPSIG 52
>VGLB_BHV1P (P17471) Glycoprotein I precursor (Glycoprotein GVP-6)| (Glycoprotein 11A) (Glycoprotein 16) (Glycoprotein G130) Length = 928 Score = 28.5 bits (62), Expect = 8.4 Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 1/65 (1%) Frame = +2 Query: 212 SPSAGGDVPTPALPPVRLAAGQAATIQPSSPRYFFSSLAGKDASSHHR-RIAIAVDLSDE 388 +P+AG TP PP AA A PS P A D S+ R + +A + Sbjct: 63 APAAGRPATTPPAPPPEEAASPAPPASPSPPGPDGDDAASPDNSTDVRAALRLAQAAGEN 122 Query: 389 SAFAV 403 S F V Sbjct: 123 SRFFV 127
>ODP2_RALEU (Q59098) Dihydrolipoyllysine-residue acetyltransferase component of| pyruvate dehydrogenase complex (EC 2.3.1.12) (E2) (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex) Length = 553 Score = 28.5 bits (62), Expect = 8.4 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 3/54 (5%) Frame = +2 Query: 152 ESAQKP*PAAQLPMAANSNPSPSAGGDVPTP---ALPPVRLAAGQAATIQPSSP 304 E+A +P A P A + P+P+A P P A P AAG TI+ P Sbjct: 78 EAANEP---AAAPAPAAAAPAPAAAAPAPAPAPAAAPAAAPAAGGGGTIEVKVP 128
>VGLB_BHV1C (P12640) Glycoprotein I precursor (Glycoprotein GVP-6)| (Glycoprotein 11A) (Glycoprotein 16) (Glycoprotein G130) (Glycoprotein B) Length = 932 Score = 28.5 bits (62), Expect = 8.4 Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 1/65 (1%) Frame = +2 Query: 212 SPSAGGDVPTPALPPVRLAAGQAATIQPSSPRYFFSSLAGKDASSHHR-RIAIAVDLSDE 388 +P+AG TP PP AA A PS P A D S+ R + +A + Sbjct: 63 APAAGRPATTPPAPPPEEAASPAPPASPSPPGPDGDDAASPDNSTDVRAALRLAQAAGEN 122 Query: 389 SAFAV 403 S F V Sbjct: 123 SRFFV 127
>SAP30_HUMAN (O75446) Histone deacetylase complex subunit SAP30 (Sin3-associated| polypeptide, 30 kDa) (Sin3 corepressor complex subunit SAP30) Length = 220 Score = 28.5 bits (62), Expect = 8.4 Identities = 17/41 (41%), Positives = 18/41 (43%) Frame = -1 Query: 288 IVAACPAARRTGGSAGVGTSPPADGEGLELAAMGSWAAG*G 166 +VAA AA G G GT G G AA AAG G Sbjct: 22 VVAAAAAAASAGNGTGAGTGAEVPGAGAVSAAGPPGAAGPG 62
>POLG_MDMV (P32652) Genome polyprotein [Contains: Nuclear inclusion protein B| (NI-B) (NIB) (RNA-directed RNA polymerase) (EC 2.7.7.48); Coat protein (CP)] (Fragment) Length = 380 Score = 28.5 bits (62), Expect = 8.4 Identities = 12/24 (50%), Positives = 15/24 (62%) Frame = -1 Query: 255 GGSAGVGTSPPADGEGLELAAMGS 184 GGS GT+PPA G G + A G+ Sbjct: 62 GGSGSQGTTPPATGSGAKPATSGA 85
>PSAD_HORVU (P36213) Photosystem I reaction center subunit II, chloroplast| precursor (Photosystem I 20 kDa subunit) (PSI-D) Length = 205 Score = 28.5 bits (62), Expect = 8.4 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 4/60 (6%) Frame = +2 Query: 164 KP*PAAQLPMAANSNPSP--SAGGDVPTPALPPVRLAAG--QAATIQPSSPRYFFSSLAG 331 KP PA ++ P+P +A D P PA PP A + PS+P F G Sbjct: 24 KPRPATLAMPSSARGPAPLFAAAPDTPAPAAPPAEPAPAGFVPPQLDPSTPSPIFGGSTG 83
>SYA_THET8 (P74941) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)| (AlaRS) Length = 882 Score = 28.5 bits (62), Expect = 8.4 Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 2/55 (3%) Frame = -1 Query: 348 WEEASLPASEEKK*RGEEGWIVA--ACPAARRTGGSAGVGTSPPADGEGLELAAM 190 W A LP + K R +VA A A +GG A + SP A G GLE A+ Sbjct: 790 WTVAELPGLDAKALRQAADDLVARGADVALVLSGGQAVLKLSPKAQGMGLEAGAL 844
>SYA_THET2 (P61707) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)| (AlaRS) Length = 882 Score = 28.5 bits (62), Expect = 8.4 Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 2/55 (3%) Frame = -1 Query: 348 WEEASLPASEEKK*RGEEGWIVA--ACPAARRTGGSAGVGTSPPADGEGLELAAM 190 W A LP + K R +VA A A +GG A + SP A G GLE A+ Sbjct: 790 WTVAELPGLDAKALRQAADDLVARGADVALVLSGGQAVLKLSPKAQGMGLEAGAL 844
>RGS3_MOUSE (Q9DC04) Regulator of G-protein signaling 3 (RGS3) (C2PA)| Length = 966 Score = 28.5 bits (62), Expect = 8.4 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%) Frame = +2 Query: 158 AQKP*PAAQLPMAANSNPS--PSAGGDVPTPA-LPPVRLAAGQAATIQPSSP 304 ++ P P+ +LP + PS PS ++P LPP + ++GQ A P SP Sbjct: 461 SKDPSPSQELPAGQDLPPSKDPSPSQELPVGQDLPPRKDSSGQEAAPGPESP 512
>PCOC1_RAT (O08628) Procollagen C-endopeptidase enhancer 1 precursor| (Procollagen COOH-terminal proteinase enhancer 1) (Procollagen C-proteinase enhancer 1) (PCPE-1) (Type I procollagen COOH-terminal proteinase enhancer) (Type 1 procollagen C-proteinase e Length = 468 Score = 28.5 bits (62), Expect = 8.4 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 7/69 (10%) Frame = +2 Query: 119 HREIPE*TRREESAQKP*PAAQLPMAANSNPSPSAGGDVPTPALPPVR-------LAAGQ 277 +R +P +ESA P AQ + S+P G V P+ P V+ A Q Sbjct: 269 YRTLPRDAVEKESAPSPGEDAQHGPQSRSDPKTGTGPKVKPPSKPKVQPVEKPEGSPATQ 328 Query: 278 AATIQPSSP 304 A + P +P Sbjct: 329 ATPVAPDAP 337 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.315 0.129 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 45,445,945 Number of Sequences: 219361 Number of extensions: 804879 Number of successful extensions: 5493 Number of sequences better than 10.0: 54 Number of HSP's better than 10.0 without gapping: 4675 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5436 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2851757076 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits)
