| Clone Name | bast55c03 |
|---|---|
| Clone Library Name | barley_pub |
| No. | Definition | Score (bits) |
E Value |
1 | ECHB_ECHCA (P81996) Echicetin beta subunit | 30 | 4.1 | 2 | VIRD2_AGRRH (P13462) T-DNA border endonuclease virD2 (EC 3.1.-.-) | 29 | 6.9 | 3 | MSS18_YEAST (P08593) Protein MSS18 | 28 | 9.1 |
|---|
>ECHB_ECHCA (P81996) Echicetin beta subunit| Length = 123 Score = 29.6 bits (65), Expect = 4.1 Identities = 14/43 (32%), Positives = 17/43 (39%) Frame = -3 Query: 287 GAQPAWSSRNWDWEAAASMDL*ALRSWGKAWERNRACTAIGTT 159 G W W+W A +D KAW+ R C A TT Sbjct: 67 GLSDYWRDCYWEWSDGAQLDY-------KAWDNERHCFAAKTT 102
>VIRD2_AGRRH (P13462) T-DNA border endonuclease virD2 (EC 3.1.-.-)| Length = 436 Score = 28.9 bits (63), Expect = 6.9 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 2/46 (4%) Frame = +1 Query: 259 FLDDHAGCAPAVACI--GNSTVLSDLPRSELTCNDNYGFVPRKRPR 390 F DD +P V+ + GN+ SDLPRS + +Y KRPR Sbjct: 286 FADDIESGSPPVSDVRAGNANADSDLPRSTVARTTDYSQRWSKRPR 331
>MSS18_YEAST (P08593) Protein MSS18| Length = 268 Score = 28.5 bits (62), Expect = 9.1 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 4/45 (8%) Frame = -3 Query: 398 AITRGRFLGTKP*LSLHVSSLRGRSLSTVLFPIHA----TAGAQP 276 A+ G F T+P L L ++S R L+TVLF + A T G +P Sbjct: 55 AVNNGTFQRTRPKLDLVLASSDIRKLATVLFNLKALIMNTKGEEP 99 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,920,954 Number of Sequences: 219361 Number of extensions: 876643 Number of successful extensions: 2245 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 2202 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2245 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3072927439 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)