ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast55c03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ECHB_ECHCA (P81996) Echicetin beta subunit 30 4.1
2VIRD2_AGRRH (P13462) T-DNA border endonuclease virD2 (EC 3.1.-.-) 29 6.9
3MSS18_YEAST (P08593) Protein MSS18 28 9.1

>ECHB_ECHCA (P81996) Echicetin beta subunit|
          Length = 123

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 14/43 (32%), Positives = 17/43 (39%)
 Frame = -3

Query: 287 GAQPAWSSRNWDWEAAASMDL*ALRSWGKAWERNRACTAIGTT 159
           G    W    W+W   A +D        KAW+  R C A  TT
Sbjct: 67  GLSDYWRDCYWEWSDGAQLDY-------KAWDNERHCFAAKTT 102



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>VIRD2_AGRRH (P13462) T-DNA border endonuclease virD2 (EC 3.1.-.-)|
          Length = 436

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +1

Query: 259 FLDDHAGCAPAVACI--GNSTVLSDLPRSELTCNDNYGFVPRKRPR 390
           F DD    +P V+ +  GN+   SDLPRS +    +Y     KRPR
Sbjct: 286 FADDIESGSPPVSDVRAGNANADSDLPRSTVARTTDYSQRWSKRPR 331



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>MSS18_YEAST (P08593) Protein MSS18|
          Length = 268

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
 Frame = -3

Query: 398 AITRGRFLGTKP*LSLHVSSLRGRSLSTVLFPIHA----TAGAQP 276
           A+  G F  T+P L L ++S   R L+TVLF + A    T G +P
Sbjct: 55  AVNNGTFQRTRPKLDLVLASSDIRKLATVLFNLKALIMNTKGEEP 99


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,920,954
Number of Sequences: 219361
Number of extensions: 876643
Number of successful extensions: 2245
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2245
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3072927439
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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