ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast55b10 |
|---|---|
| Clone Library Name | barley_pub |
>BRI1_ARATH (O22476) BRASSINOSTEROID INSENSITIVE 1 precursor (EC 2.7.11.1)| (AtBRI1) (Brassinosteroid LRR receptor kinase) Length = 1196 Score = 42.0 bits (97), Expect = 4e-04 Identities = 30/109 (27%), Positives = 45/109 (41%), Gaps = 3/109 (2%) Frame = +1 Query: 76 LCLVGSVACGVVRCRNRKHGDKEAE---EKKVRWGDKXXXXXXXXXXXXXXXXXXXXXLF 246 +C+ G + G + R+ + E E E GD+ F Sbjct: 805 VCIFGLILVGREMRKRRRKKEAELEMYAEGHGNSGDRTANNTNWKLTGVKEALSINLAAF 864 Query: 247 ERPLMELTLADLAAATSGFGRESQLAERGGRSGAAYRAILPGDLQVVVR 393 E+PL +LT ADL AT+GF +S + G G Y+AIL V ++ Sbjct: 865 EKPLRKLTFADLLQATNGFHNDSLIG--SGGFGDVYKAILKDGSAVAIK 911
>EXS_ARATH (Q9LYN8) Leucine-rich repeat receptor protein kinase EXS precursor| (EC 2.7.11.1) (Extra sporogenous cells protein) (EXCESS MICROSPOROCYTES1 protein) Length = 1192 Score = 39.3 bits (90), Expect = 0.002 Identities = 18/51 (35%), Positives = 32/51 (62%) Frame = +1 Query: 241 LFERPLMELTLADLAAATSGFGRESQLAERGGRSGAAYRAILPGDLQVVVR 393 +FE+PL+++ L D+ AT F +++ + + G G Y+A LPG+ V V+ Sbjct: 897 MFEQPLLKVRLGDIVEATDHFSKKNIIGD--GGFGTVYKACLPGEKTVAVK 945
>BRI1_LYCPE (Q8L899) Systemin receptor SR160 precursor (EC 2.7.11.1)| (Brassinosteroid LRR receptor kinase) Length = 1207 Score = 36.6 bits (83), Expect = 0.015 Identities = 27/128 (21%), Positives = 42/128 (32%) Frame = +1 Query: 10 RKKHLXXXXXXXXXXXXXXXXLLCLVGSVACGVVRCRNRKHGDKEAEEKKVRWGDKXXXX 189 +K H L C+ G + + + R+ + E Sbjct: 791 QKSHRRQASLAGSVAMGLLFSLFCIFGLIIVAIETKKRRRKKEAALEAYMDGHSHSATAN 850 Query: 190 XXXXXXXXXXXXXXXXXLFERPLMELTLADLAAATSGFGRESQLAERGGRSGAAYRAILP 369 FE+PL +LT ADL AT+GF +S + G G Y+A L Sbjct: 851 SAWKFTSAREALSINLAAFEKPLRKLTFADLLEATNGFHNDSLVG--SGGFGDVYKAQLK 908 Query: 370 GDLQVVVR 393 V ++ Sbjct: 909 DGSVVAIK 916
>BRI1_LYCES (Q8GUQ5) Brassinosteroid LRR receptor kinase precursor (EC 2.7.11.1)| (tBRI1) (Altered brassinolide sensitivity 1) (Systemin receptor SR160) Length = 1207 Score = 36.6 bits (83), Expect = 0.015 Identities = 27/128 (21%), Positives = 42/128 (32%) Frame = +1 Query: 10 RKKHLXXXXXXXXXXXXXXXXLLCLVGSVACGVVRCRNRKHGDKEAEEKKVRWGDKXXXX 189 +K H L C+ G + + + R+ + E Sbjct: 791 QKSHRRQASLAGSVAMGLLFSLFCIFGLIIVAIETKKRRRKKEAALEAYMDGHSHSATAN 850 Query: 190 XXXXXXXXXXXXXXXXXLFERPLMELTLADLAAATSGFGRESQLAERGGRSGAAYRAILP 369 FE+PL +LT ADL AT+GF +S + G G Y+A L Sbjct: 851 SAWKFTSAREALSINLAAFEKPLRKLTFADLLEATNGFHNDSLVG--SGGFGDVYKAQLK 908 Query: 370 GDLQVVVR 393 V ++ Sbjct: 909 DGSVVAIK 916
>BRL3_ARATH (Q9LJF3) Serine/threonine-protein kinase BRI1-like 3 precursor (EC| 2.7.11.1) (BRASSINOSTEROID INSENSITIVE 1-like protein 3) Length = 1164 Score = 33.9 bits (76), Expect = 0.096 Identities = 19/50 (38%), Positives = 27/50 (54%) Frame = +1 Query: 244 FERPLMELTLADLAAATSGFGRESQLAERGGRSGAAYRAILPGDLQVVVR 393 FE+PL +LT A L AT+GF +S + G G Y+A L V ++ Sbjct: 839 FEKPLRKLTFAHLLEATNGFSADSMIG--SGGFGDVYKAKLADGSVVAIK 886
>BRL1_ARATH (Q9ZWC8) Serine/threonine-protein kinase BRI1-like 1 precursor (EC| 2.7.11.1) (BRASSINOSTEROID INSENSITIVE 1-like protein 1) Length = 1166 Score = 33.5 bits (75), Expect = 0.13 Identities = 19/50 (38%), Positives = 27/50 (54%) Frame = +1 Query: 244 FERPLMELTLADLAAATSGFGRESQLAERGGRSGAAYRAILPGDLQVVVR 393 FE+PL +LT A L AT+GF E+ + G G Y+A L V ++ Sbjct: 840 FEKPLRKLTFAHLLEATNGFSAETMVG--SGGFGEVYKAQLRDGSVVAIK 887
>NMDE4_RAT (Q62645) Glutamate [NMDA] receptor subunit epsilon 4 precursor| (N-methyl D-aspartate receptor subtype 2D) (NR2D) (NMDAR2D) Length = 1323 Score = 27.7 bits (60), Expect = 6.9 Identities = 13/24 (54%), Positives = 18/24 (75%) Frame = -3 Query: 76 AGR*LTPPRTQSPRQPHPDASFFS 5 AGR L+PP TQ P++P P S+F+ Sbjct: 983 AGRPLSPPTTQPPQKPPP--SYFA 1004
>NMDE4_MOUSE (Q03391) Glutamate [NMDA] receptor subunit epsilon 4 precursor| (N-methyl D-aspartate receptor subtype 2D) (NR2D) (NMDAR2D) Length = 1323 Score = 27.7 bits (60), Expect = 6.9 Identities = 13/24 (54%), Positives = 18/24 (75%) Frame = -3 Query: 76 AGR*LTPPRTQSPRQPHPDASFFS 5 AGR L+PP TQ P++P P S+F+ Sbjct: 983 AGRPLSPPTTQPPQKPPP--SYFA 1004
>MECP2_RAT (Q00566) Methyl-CpG-binding protein 2 (MeCP-2 protein) (MeCP2)| Length = 492 Score = 27.7 bits (60), Expect = 6.9 Identities = 14/30 (46%), Positives = 20/30 (66%) Frame = -2 Query: 383 TCRSPGRMARYAAPLRPPRSASWDSRPKPE 294 TC+SPGR ++ ++P RS+S S PK E Sbjct: 338 TCKSPGRKSKESSP--KGRSSSASSPPKKE 365
>MECP2_MACFA (Q95LG8) Methyl-CpG-binding protein 2 (MeCP-2 protein) (MeCP2)| Length = 486 Score = 27.7 bits (60), Expect = 6.9 Identities = 14/30 (46%), Positives = 20/30 (66%) Frame = -2 Query: 383 TCRSPGRMARYAAPLRPPRSASWDSRPKPE 294 TC+SPGR ++ ++P RS+S S PK E Sbjct: 338 TCKSPGRKSKESSP--KGRSSSASSPPKKE 365
>MECP2_HUMAN (P51608) Methyl-CpG-binding protein 2 (MeCP-2 protein) (MeCP2)| Length = 486 Score = 27.7 bits (60), Expect = 6.9 Identities = 14/30 (46%), Positives = 20/30 (66%) Frame = -2 Query: 383 TCRSPGRMARYAAPLRPPRSASWDSRPKPE 294 TC+SPGR ++ ++P RS+S S PK E Sbjct: 338 TCKSPGRKSKESSP--KGRSSSASSPPKKE 365
>MECP2_MOUSE (Q9Z2D6) Methyl-CpG-binding protein 2 (MeCP-2 protein) (MeCP2)| Length = 484 Score = 27.7 bits (60), Expect = 6.9 Identities = 14/30 (46%), Positives = 20/30 (66%) Frame = -2 Query: 383 TCRSPGRMARYAAPLRPPRSASWDSRPKPE 294 TC+SPGR ++ ++P RS+S S PK E Sbjct: 338 TCKSPGRKSKESSP--KGRSSSASSPPKKE 365
>TDCG_ECOLI (P42630) L-serine dehydratase tdcG (EC 4.3.1.17) (L-serine| deaminase) (SDH) Length = 454 Score = 27.3 bits (59), Expect = 9.0 Identities = 17/46 (36%), Positives = 20/46 (43%) Frame = +1 Query: 262 ELTLADLAAATSGFGRESQLAERGGRSGAAYRAILPGDLQVVVRVV 399 EL L A +GF R Q+ G G +LPG L V R V Sbjct: 196 ELALRSKAEIDAGFARIWQVMHDGIERGMNTEGVLPGPLNVPRRAV 241 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 32,921,811 Number of Sequences: 219361 Number of extensions: 354434 Number of successful extensions: 1443 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 1403 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1442 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 1365190992 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
