| Clone Name | bast55b10 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 182 bits (92), Expect = 6e-43 Identities = 176/204 (86%) Strand = Plus / Plus Query: 196 gtggcggcggcgacagcaaagggggcatcggccgcgccggtggtgctcttcgagcggccg 255 |||||||||||| | || ||||||| || || |||||||||||||| |||||||||||| Sbjct: 20175467 gtggcggcggcggcggcgaaggggggttctgctgcgccggtggtgctgttcgagcggccg 20175526 Query: 256 ctcatggagctgacgctcgccgacctcgccgcggccacttctggcttcggccgcgaatcc 315 || |||||||| ||||| |||||||| |||| |||||| || || ||||| ||||| || Sbjct: 20175527 ctgatggagctcacgctggccgacctggccgaggccacgtccgggttcgggcgcgagtcg 20175586 Query: 316 cagctcgcggagcgcggcggtcgcagcggcgcggcgtaccgcgccattctgcccggcgac 375 |||||||||||||||||||| ||||||||||| |||||||||||| | || || |||||| Sbjct: 20175587 cagctcgcggagcgcggcggccgcagcggcgccgcgtaccgcgccgtgctcccgggcgac 20175646 Query: 376 ctgcaggtcgtcgtgcgcgtcgtg 399 |||| |||||||| ||||||||| Sbjct: 20175647 atgcacgtcgtcgtccgcgtcgtg 20175670 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 269 cgctcgccgacctcgccgcg 288 |||||||||||||||||||| Sbjct: 11160534 cgctcgccgacctcgccgcg 11160553
>dbj|AP003608.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0007G12 Length = 111819 Score = 182 bits (92), Expect = 6e-43 Identities = 176/204 (86%) Strand = Plus / Plus Query: 196 gtggcggcggcgacagcaaagggggcatcggccgcgccggtggtgctcttcgagcggccg 255 |||||||||||| | || ||||||| || || |||||||||||||| |||||||||||| Sbjct: 41467 gtggcggcggcggcggcgaaggggggttctgctgcgccggtggtgctgttcgagcggccg 41526 Query: 256 ctcatggagctgacgctcgccgacctcgccgcggccacttctggcttcggccgcgaatcc 315 || |||||||| ||||| |||||||| |||| |||||| || || ||||| ||||| || Sbjct: 41527 ctgatggagctcacgctggccgacctggccgaggccacgtccgggttcgggcgcgagtcg 41586 Query: 316 cagctcgcggagcgcggcggtcgcagcggcgcggcgtaccgcgccattctgcccggcgac 375 |||||||||||||||||||| ||||||||||| |||||||||||| | || || |||||| Sbjct: 41587 cagctcgcggagcgcggcggccgcagcggcgccgcgtaccgcgccgtgctcccgggcgac 41646 Query: 376 ctgcaggtcgtcgtgcgcgtcgtg 399 |||| |||||||| ||||||||| Sbjct: 41647 atgcacgtcgtcgtccgcgtcgtg 41670
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 159 bits (80), Expect = 8e-36 Identities = 149/172 (86%) Strand = Plus / Minus Query: 227 ccgcgccggtggtgctcttcgagcggccgctcatggagctgacgctcgccgacctcgccg 286 |||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||| Sbjct: 7976712 ccgcgccggtggtgctggtcgagcggccgctgatggagctgacgctggccgacctcgccg 7976653 Query: 287 cggccacttctggcttcggccgcgaatcccagctcgcggagcgcggcggtcgcagcggcg 346 |||| || || || ||||| ||||| || |||||||| || |||||| |||||||||| Sbjct: 7976652 cggcgacgtcggggttcgggcgcgagtcgcagctcgccgacgtcggcggccgcagcggcg 7976593 Query: 347 cggcgtaccgcgccattctgcccggcgacctgcaggtcgtcgtgcgcgtcgt 398 | |||||||||||| | || || || |||||||| ||||||||||||||||| Sbjct: 7976592 ccgcgtaccgcgccgtgctcccgggggacctgcacgtcgtcgtgcgcgtcgt 7976541 Score = 44.1 bits (22), Expect = 0.34 Identities = 25/26 (96%) Strand = Plus / Minus Query: 182 aagacgaggtggttgtggcggcggcg 207 ||||||||||||| |||||||||||| Sbjct: 31667764 aagacgaggtggtggtggcggcggcg 31667739
>dbj|AP005613.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0082C09 Length = 160665 Score = 159 bits (80), Expect = 8e-36 Identities = 149/172 (86%) Strand = Plus / Minus Query: 227 ccgcgccggtggtgctcttcgagcggccgctcatggagctgacgctcgccgacctcgccg 286 |||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||| Sbjct: 100127 ccgcgccggtggtgctggtcgagcggccgctgatggagctgacgctggccgacctcgccg 100068 Query: 287 cggccacttctggcttcggccgcgaatcccagctcgcggagcgcggcggtcgcagcggcg 346 |||| || || || ||||| ||||| || |||||||| || |||||| |||||||||| Sbjct: 100067 cggcgacgtcggggttcgggcgcgagtcgcagctcgccgacgtcggcggccgcagcggcg 100008 Query: 347 cggcgtaccgcgccattctgcccggcgacctgcaggtcgtcgtgcgcgtcgt 398 | |||||||||||| | || || || |||||||| ||||||||||||||||| Sbjct: 100007 ccgcgtaccgcgccgtgctcccgggggacctgcacgtcgtcgtgcgcgtcgt 99956
>ref|NM_017212.1| Rattus norvegicus microtubule-associated protein tau (Mapt), mRNA Length = 5240 Score = 52.0 bits (26), Expect = 0.001 Identities = 26/26 (100%) Strand = Plus / Minus Query: 188 aggtggttgtggcggcggcgacagca 213 |||||||||||||||||||||||||| Sbjct: 172 aggtggttgtggcggcggcgacagca 147
>ref|XM_579401.1| PREDICTED: Rattus norvegicus hypothetical gene supported by NM_017212 (LOC497674), mRNA Length = 5242 Score = 52.0 bits (26), Expect = 0.001 Identities = 26/26 (100%) Strand = Plus / Minus Query: 188 aggtggttgtggcggcggcgacagca 213 |||||||||||||||||||||||||| Sbjct: 177 aggtggttgtggcggcggcgacagca 152
>emb|X79321.1|RNWTAU R.norvegicus (Wistar) mRNA for tau microtubule-associated protein Length = 5240 Score = 52.0 bits (26), Expect = 0.001 Identities = 26/26 (100%) Strand = Plus / Minus Query: 188 aggtggttgtggcggcggcgacagca 213 |||||||||||||||||||||||||| Sbjct: 172 aggtggttgtggcggcggcgacagca 147
>emb|X94916.1|RNPTAU R.norvegicus promoter of tau microtubule-associated protein Length = 3405 Score = 52.0 bits (26), Expect = 0.001 Identities = 26/26 (100%) Strand = Plus / Minus Query: 188 aggtggttgtggcggcggcgacagca 213 |||||||||||||||||||||||||| Sbjct: 3048 aggtggttgtggcggcggcgacagca 3023
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 48.1 bits (24), Expect = 0.022 Identities = 24/24 (100%) Strand = Plus / Minus Query: 365 tgcccggcgacctgcaggtcgtcg 388 |||||||||||||||||||||||| Sbjct: 1970615 tgcccggcgacctgcaggtcgtcg 1970592
>ref|XM_467836.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1393 Score = 44.1 bits (22), Expect = 0.34 Identities = 25/26 (96%) Strand = Plus / Minus Query: 182 aagacgaggtggttgtggcggcggcg 207 ||||||||||||| |||||||||||| Sbjct: 276 aagacgaggtggtggtggcggcggcg 251
>ref|XM_506975.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1288_G09.10 mRNA Length = 1654 Score = 44.1 bits (22), Expect = 0.34 Identities = 25/26 (96%) Strand = Plus / Minus Query: 182 aagacgaggtggttgtggcggcggcg 207 ||||||||||||| |||||||||||| Sbjct: 518 aagacgaggtggtggtggcggcggcg 493
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Plus Query: 267 gacgctcgccgacctcgccgcg 288 |||||||||||||||||||||| Sbjct: 1845836 gacgctcgccgacctcgccgcg 1845857 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 264 gctgacgctcgccgacctcgc 284 ||||||||||||||||||||| Sbjct: 2193183 gctgacgctcgccgacctcgc 2193163 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 269 cgctcgccgacctcgccgcg 288 |||||||||||||||||||| Sbjct: 2406053 cgctcgccgacctcgccgcg 2406034 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 269 cgctcgccgacctcgccgcg 288 |||||||||||||||||||| Sbjct: 263997 cgctcgccgacctcgccgcg 263978
>gb|AY489557.1| Rhodopseudomonas palustris 5-aminolevulinic acid synthase (hemA) gene, complete cds Length = 1698 Score = 44.1 bits (22), Expect = 0.34 Identities = 25/26 (96%) Strand = Plus / Minus Query: 322 gcggagcgcggcggtcgcagcggcgc 347 ||||| |||||||||||||||||||| Sbjct: 1109 gcggatcgcggcggtcgcagcggcgc 1084
>emb|BX640451.1| Bordetella bronchiseptica strain RB50, complete genome; segment 15/16 Length = 343473 Score = 44.1 bits (22), Expect = 0.34 Identities = 25/26 (96%) Strand = Plus / Plus Query: 368 ccggcgacctgcaggtcgtcgtgcgc 393 |||||| ||||||||||||||||||| Sbjct: 275439 ccggcgccctgcaggtcgtcgtgcgc 275464
>emb|BX640436.1| Bordetella parapertussis strain 12822, complete genome; segment 14/14 Length = 255260 Score = 44.1 bits (22), Expect = 0.34 Identities = 25/26 (96%) Strand = Plus / Plus Query: 368 ccggcgacctgcaggtcgtcgtgcgc 393 |||||| ||||||||||||||||||| Sbjct: 67863 ccggcgccctgcaggtcgtcgtgcgc 67888
>emb|BX640422.1| Bordetella pertussis strain Tohama I, complete genome; segment 12/12 Length = 257701 Score = 44.1 bits (22), Expect = 0.34 Identities = 25/26 (96%) Strand = Plus / Plus Query: 368 ccggcgacctgcaggtcgtcgtgcgc 393 |||||| ||||||||||||||||||| Sbjct: 128891 ccggcgccctgcaggtcgtcgtgcgc 128916
>gb|AC009785.8| Homo sapiens chromosome 7 clone RP11-198E23, complete sequence Length = 179145 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Minus Query: 139 aaggaggcggaggagaagaagg 160 |||||||||||||||||||||| Sbjct: 114944 aaggaggcggaggagaagaagg 114923
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 44.1 bits (22), Expect = 0.34 Identities = 34/38 (89%) Strand = Plus / Minus Query: 321 cgcggagcgcggcggtcgcagcggcgcggcgtaccgcg 358 |||||| || |||| |||| |||||||||||||||||| Sbjct: 3481591 cgcggaacggggcgatcgcggcggcgcggcgtaccgcg 3481554
>gb|AY028699.1| Brassica napus receptor protein kinase PERK1 mRNA, complete cds Length = 2189 Score = 44.1 bits (22), Expect = 0.34 Identities = 25/26 (96%) Strand = Plus / Minus Query: 144 ggcggaggagaagaaggtgcggtggg 169 ||||||||||||||||||| |||||| Sbjct: 215 ggcggaggagaagaaggtgtggtggg 190
>dbj|AP004119.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1288_G09 Length = 109672 Score = 44.1 bits (22), Expect = 0.34 Identities = 25/26 (96%) Strand = Plus / Minus Query: 182 aagacgaggtggttgtggcggcggcg 207 ||||||||||||| |||||||||||| Sbjct: 47551 aagacgaggtggtggtggcggcggcg 47526
>dbj|AK105991.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-H01, full insert sequence Length = 1393 Score = 44.1 bits (22), Expect = 0.34 Identities = 25/26 (96%) Strand = Plus / Minus Query: 182 aagacgaggtggttgtggcggcggcg 207 ||||||||||||| |||||||||||| Sbjct: 276 aagacgaggtggtggtggcggcggcg 251
>dbj|AK105877.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-C05, full insert sequence Length = 1654 Score = 44.1 bits (22), Expect = 0.34 Identities = 25/26 (96%) Strand = Plus / Minus Query: 182 aagacgaggtggttgtggcggcggcg 207 ||||||||||||| |||||||||||| Sbjct: 518 aagacgaggtggtggtggcggcggcg 493
>gb|AC122265.4| Mus musculus chromosome 8 clone RP23-197I18, complete sequence Length = 191473 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 189 ggtggttgtggcggcggcgacagca 213 |||||| |||||||||||||||||| Sbjct: 49921 ggtggtggtggcggcggcgacagca 49897
>gb|AY271660.1| Actinomadura madurae maduropeptin biosynthesis gene cluster, partial sequence Length = 11426 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 315 ccagctcgcggagcgcggcggtcgc 339 ||||||||||||||| ||||||||| Sbjct: 6609 ccagctcgcggagcgtggcggtcgc 6585
>gb|AC120838.10| Pan troglodytes clone ch251-239a19, complete sequence Length = 150256 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 139 aaggaggcggaggagaagaag 159 ||||||||||||||||||||| Sbjct: 120092 aaggaggcggaggagaagaag 120072
>gb|AC068448.10| Homo sapiens chromosome 15, clone RP11-624A21, complete sequence Length = 165208 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 139 aaggaggcggaggagaagaag 159 ||||||||||||||||||||| Sbjct: 45124 aaggaggcggaggagaagaag 45144
>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome Length = 3147090 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 136 gacaaggaggcggaggagaagaagg 160 |||| |||||||||||||||||||| Sbjct: 1954118 gacagggaggcggaggagaagaagg 1954094
>emb|AL939130.1|SCO939130 Streptomyces coelicolor A3(2) complete genome; segment 27/29 Length = 303450 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 271 ctcgccgacctcgccgcggcc 291 ||||||||||||||||||||| Sbjct: 10788 ctcgccgacctcgccgcggcc 10808
>gb|AC147448.2| Gallus gallus BAC clone CH261-2D18 from chromosome unknown, complete sequence Length = 216522 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 106 gtggtgaggtgcaggaacagg 126 ||||||||||||||||||||| Sbjct: 41045 gtggtgaggtgcaggaacagg 41065
>emb|AL731650.26| Mouse DNA sequence from clone RP23-368K3 on chromosome 8, complete sequence Length = 185422 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 189 ggtggttgtggcggcggcgacagca 213 |||||| |||||||||||||||||| Sbjct: 184548 ggtggtggtggcggcggcgacagca 184524
>gb|AY665222.1| Saimiri boliviensis atonal 1 mRNA, partial cds Length = 1023 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 188 aggtggttgtggcggcggcg 207 |||||||||||||||||||| Sbjct: 96 aggtggttgtggcggcggcg 77
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 269 cgctcgccgacctcgccgcg 288 |||||||||||||||||||| Sbjct: 3366142 cgctcgccgacctcgccgcg 3366123
>ref|NM_010838.3| Mus musculus microtubule-associated protein tau (Mapt), transcript variant 2, mRNA Length = 5213 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 188 aggtggttgtggcggcggcg 207 |||||||||||||||||||| Sbjct: 126 aggtggttgtggcggcggcg 107
>ref|NM_001038609.1| Mus musculus microtubule-associated protein tau (Mapt), transcript variant 1, mRNA Length = 5387 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 188 aggtggttgtggcggcggcg 207 |||||||||||||||||||| Sbjct: 126 aggtggttgtggcggcggcg 107
>gb|AC119289.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0025P09, complete sequence Length = 167318 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 ggaggcggaggagaagaagg 160 |||||||||||||||||||| Sbjct: 77974 ggaggcggaggagaagaagg 77955
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 269 cgctcgccgacctcgccgcg 288 |||||||||||||||||||| Sbjct: 405169 cgctcgccgacctcgccgcg 405150
>ref|XM_753849.1| Ustilago maydis 521 hypothetical protein (UM02795.1) partial mRNA Length = 5772 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 tgtggcggcggcgacagcaa 214 |||||||||||||||||||| Sbjct: 5628 tgtggcggcggcgacagcaa 5647
>gb|AC101527.12| Mus musculus chromosome 15, clone RP23-191D20, complete sequence Length = 193390 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 136 gacaaggaggcggaggagaagaag 159 |||||||||| ||||||||||||| Sbjct: 114204 gacaaggaggaggaggagaagaag 114181
>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence Length = 3363523 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 218 gggcatcggccgcgccggtg 237 |||||||||||||||||||| Sbjct: 340837 gggcatcggccgcgccggtg 340856
>gb|AC134517.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OJA1325D05, complete sequence Length = 136214 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 148 gaggagaagaaggtgcggtggggc 171 ||||||||||||| |||||||||| Sbjct: 74542 gaggagaagaaggcgcggtggggc 74565
>gb|AY055383.1| Homo sapiens type II transmembrane serine protease 6 (TMPRSS6) gene, complete cds Length = 38345 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 140 aggaggcggaggagaagaag 159 |||||||||||||||||||| Sbjct: 25070 aggaggcggaggagaagaag 25051
>emb|AL137008.9| Human DNA sequence from clone RP3-361I14 on chromosome 6 Contains a KIAA1470 pseudogene and the 3' end of the BPAG1 gene for bullous pemphigoid antigen 1 (230/240kD), complete sequence Length = 67033 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 139 aaggaggcggaggagaagaa 158 |||||||||||||||||||| Sbjct: 25621 aaggaggcggaggagaagaa 25602
>emb|AL022314.1|HS1170K4 Human DNA sequence from clone RP5-1170K4 on chromosome 22q12.2-13.1, complete sequence Length = 104353 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 aggaggcggaggagaagaag 159 |||||||||||||||||||| Sbjct: 31391 aggaggcggaggagaagaag 31410
>gb|BC014748.1| Mus musculus microtubule-associated protein tau, mRNA (cDNA clone MGC:25379 IMAGE:4504850), complete cds Length = 1313 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 188 aggtggttgtggcggcggcg 207 |||||||||||||||||||| Sbjct: 64 aggtggttgtggcggcggcg 45
>emb|BX572595.1| Rhodopseudomonas palustris CGA009 complete genome; segment 3/16 Length = 349260 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 219 ggcatcggccgcgccggtgg 238 |||||||||||||||||||| Sbjct: 89091 ggcatcggccgcgccggtgg 89072
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 327 gcgcggcggtcgcagcggcg 346 |||||||||||||||||||| Sbjct: 2797855 gcgcggcggtcgcagcggcg 2797874
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 269 cgctcgccgacctcgccgcg 288 |||||||||||||||||||| Sbjct: 214890 cgctcgccgacctcgccgcg 214871
>emb|AL590450.1|CNS07EGH chromosome XI of strain GB-M1 of Encephalitozoon cuniculi (Microspora) Length = 267509 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 136 gacaaggaggcggaggagaa 155 |||||||||||||||||||| Sbjct: 241073 gacaaggaggcggaggagaa 241092
>emb|AL732631.4| Mouse DNA sequence from clone RP23-345P19 on chromosome 11 no genes, complete sequence Length = 191363 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 139 aaggaggcggaggagaagaaggtg 162 ||||||| |||||||||||||||| Sbjct: 129078 aaggaggaggaggagaagaaggtg 129055
>gb|AC149292.15| Sus scrofa clone ch242-69g11, complete sequence Length = 215342 Score = 40.1 bits (20), Expect = 5.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 116 gcaggaacaggaagcacggagacaagga 143 |||| |||||||||||| |||||||||| Sbjct: 68825 gcagaaacaggaagcacagagacaagga 68798
>gb|AC091629.1|AC091629 Mus musculus chromosome 11 map 11, 64cM, Band E1, complete sequence Length = 161334 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 188 aggtggttgtggcggcggcg 207 |||||||||||||||||||| Sbjct: 133074 aggtggttgtggcggcggcg 133093
>dbj|AK147636.1| Mus musculus adult male brain UNDEFINED_CELL_LINE cDNA, RIKEN full-length enriched library, clone:M5C1097G21 product:microtubule-associated protein tau, full insert sequence Length = 5341 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 188 aggtggttgtggcggcggcg 207 |||||||||||||||||||| Sbjct: 87 aggtggttgtggcggcggcg 68
>ref|XM_691845.1| PREDICTED: Danio rerio similar to Sodium/calcium exchanger 1 precursor (Na(+)/Ca(2+)-exchange protein 1) (LOC568512), mRNA Length = 2019 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 aggaggcggaggagaagaag 159 |||||||||||||||||||| Sbjct: 1119 aggaggcggaggagaagaag 1138
>gb|CP000264.1| Jannaschia sp. CCS1, complete genome Length = 4317977 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 327 gcgcggcggtcgcagcggcg 346 |||||||||||||||||||| Sbjct: 3526788 gcgcggcggtcgcagcggcg 3526769
>ref|XM_688697.1| PREDICTED: Danio rerio similar to Sodium/calcium exchanger 1 precursor (Na(+)/Ca(2+)-exchange protein 1) (LOC565418), mRNA Length = 2271 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 aggaggcggaggagaagaag 159 |||||||||||||||||||| Sbjct: 1371 aggaggcggaggagaagaag 1390
>dbj|AK078167.1| Mus musculus adult male olfactory brain cDNA, RIKEN full-length enriched library, clone:6430400E08 product:microtubule-associated protein tau, full insert sequence Length = 1552 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 188 aggtggttgtggcggcggcg 207 |||||||||||||||||||| Sbjct: 100 aggtggttgtggcggcggcg 81
>dbj|AK038797.1| Mus musculus adult male hypothalamus cDNA, RIKEN full-length enriched library, clone:A230064C13 product:microtubule-associated protein tau, full insert sequence Length = 703 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 188 aggtggttgtggcggcggcg 207 |||||||||||||||||||| Sbjct: 83 aggtggttgtggcggcggcg 64
>ref|NM_068188.1| Caenorhabditis elegans F28E10.2 (F28E10.2) mRNA, complete cds Length = 840 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 gtggggcgacaaggaagaag 184 |||||||||||||||||||| Sbjct: 320 gtggggcgacaaggaagaag 339
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 184 gacgaggtggttgtggcggcggcg 207 ||||||||||| |||||||||||| Sbjct: 2150806 gacgaggtggtggtggcggcggcg 2150829
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 148 gaggagaagaaggtgcggtggggc 171 ||||||||||||| |||||||||| Sbjct: 9203265 gaggagaagaaggcgcggtggggc 9203288
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 ggaggcggaggagaagaagg 160 |||||||||||||||||||| Sbjct: 17818020 ggaggcggaggagaagaagg 17818001
>gb|U40801.1| Caenorhabditis elegans cosmid F28E10, complete sequence Length = 38614 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 gtggggcgacaaggaagaag 184 |||||||||||||||||||| Sbjct: 6836 gtggggcgacaaggaagaag 6855
>gb|AC074008.5| Homo sapiens BAC clone RP11-582H21 from 2, complete sequence Length = 159439 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 139 aaggaggcggaggagaagaaggtg 162 ||||||| |||||||||||||||| Sbjct: 49688 aaggaggaggaggagaagaaggtg 49711
>gb|AF322013.1|AF322012S2 Bradyrhizobium japonicum symbiotic gene region, part 2 of 2 Length = 230573 Score = 40.1 bits (20), Expect = 5.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 302 tcggccgcgaatcccagctcgcggagcg 329 ||||||||||| | |||||||||||||| Sbjct: 205576 tcggccgcgaaccgcagctcgcggagcg 205603
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 315 ccagctcgcggagcgcggcg 334 |||||||||||||||||||| Sbjct: 617951 ccagctcgcggagcgcggcg 617932
>dbj|BA000002.2| Aeropyrum pernix K1 DNA, complete genome Length = 1669695 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 140 aggaggcggaggagaagaag 159 |||||||||||||||||||| Sbjct: 338908 aggaggcggaggagaagaag 338889
>gb|AF153838.1|AF153838 Leishmania braziliensis glycerol kinase gene, partial cds Length = 549 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 tgtggcggcggcgacagcaa 214 |||||||||||||||||||| Sbjct: 100 tgtggcggcggcgacagcaa 119
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 331 ggcggtcgcagcggcgcggc 350 |||||||||||||||||||| Sbjct: 3304168 ggcggtcgcagcggcgcggc 3304187 Score = 40.1 bits (20), Expect = 5.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 302 tcggccgcgaatcccagctcgcggagcg 329 ||||||||||| | |||||||||||||| Sbjct: 2264061 tcggccgcgaaccgcagctcgcggagcg 2264088
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 270 gctcgccgacctcgccgcgg 289 |||||||||||||||||||| Sbjct: 882764 gctcgccgacctcgccgcgg 882783
>dbj|AP005748.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0042E12 Length = 164688 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 269 cgctcgccgacctcgccgcg 288 |||||||||||||||||||| Sbjct: 35356 cgctcgccgacctcgccgcg 35375
>dbj|AP004007.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OJ1217_C01 Length = 100180 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 269 cgctcgccgacctcgccgcg 288 |||||||||||||||||||| Sbjct: 90440 cgctcgccgacctcgccgcg 90459
>emb|BX324159.6| Zebrafish DNA sequence from clone CH211-10O1 in linkage group 21, complete sequence Length = 178610 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 140 aggaggcggaggagaagaag 159 |||||||||||||||||||| Sbjct: 111456 aggaggcggaggagaagaag 111437
>dbj|AK106070.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-H06, full insert sequence Length = 1731 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 269 cgctcgccgacctcgccgcg 288 |||||||||||||||||||| Sbjct: 1020 cgctcgccgacctcgccgcg 1039
>dbj|AK072757.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023142H17, full insert sequence Length = 1038 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 141 ggaggcggaggagaagaagg 160 |||||||||||||||||||| Sbjct: 822 ggaggcggaggagaagaagg 841
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 233 cggtggtgctcttcgagcgg 252 |||||||||||||||||||| Sbjct: 1468898 cggtggtgctcttcgagcgg 1468879
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 148 gaggagaagaaggtgcggtggggc 171 ||||||||||||| |||||||||| Sbjct: 9208404 gaggagaagaaggcgcggtggggc 9208427
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 184 gacgaggtggttgtggcggcggcg 207 ||||||||||| |||||||||||| Sbjct: 2150750 gacgaggtggtggtggcggcggcg 2150773
>emb|AL928756.4|CNS08CBT Oryza sativa chromosome 12, . BAC OSJNBb0077O07 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 132703 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 184 gacgaggtggttgtggcggcggcg 207 ||||||||||| |||||||||||| Sbjct: 33030 gacgaggtggtggtggcggcggcg 33053
>emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB122 of Yarrowia lipolytica Length = 3272609 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 133 ggagacaaggaggcggaggagaag 156 |||||||||||||||| ||||||| Sbjct: 317121 ggagacaaggaggcgggggagaag 317144
>emb|AL935323.6| Mouse DNA sequence from clone RP23-302M17 on chromosome 2, complete sequence Length = 133296 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 137 acaaggaggcggaggagaagaagg 160 ||||||||| |||||||||||||| Sbjct: 115351 acaaggaggaggaggagaagaagg 115328
>gb|AC119202.6| Mus musculus chromosome 8, clone RP24-185N3, complete sequence Length = 159765 Score = 40.1 bits (20), Expect = 5.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 133 ggagacaaggaggcggaggagaagaagg 160 ||||| ||||||| |||||||||||||| Sbjct: 72803 ggagaaaaggaggaggaggagaagaagg 72830 Score = 40.1 bits (20), Expect = 5.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 133 ggagacaaggaggcggaggagaagaagg 160 ||||| ||||||| |||||||||||||| Sbjct: 72666 ggagaaaaggaggaggaggagaagaagg 72693 Score = 40.1 bits (20), Expect = 5.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 133 ggagacaaggaggcggaggagaagaagg 160 ||||| ||||||| |||||||||||||| Sbjct: 72592 ggagaaaaggaggaggaggagaagaagg 72619
>gb|M18776.1|MUSTAUB Mouse tau microtubule binding protein mRNA, complete cds Length = 2190 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 188 aggtggttgtggcggcggcg 207 |||||||||||||||||||| Sbjct: 127 aggtggttgtggcggcggcg 108
>gb|M18775.1|MUSTAUA Mouse tau microtubule binding protein mRNA, complete cds Length = 1266 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 188 aggtggttgtggcggcggcg 207 |||||||||||||||||||| Sbjct: 127 aggtggttgtggcggcggcg 108
>emb|AL596383.8| Mouse DNA sequence from clone RP23-344E9 on chromosome 11, complete sequence Length = 110676 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 188 aggtggttgtggcggcggcg 207 |||||||||||||||||||| Sbjct: 82416 aggtggttgtggcggcggcg 82397 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,970,913 Number of Sequences: 3902068 Number of extensions: 3970913 Number of successful extensions: 94346 Number of sequences better than 10.0: 84 Number of HSP's better than 10.0 without gapping: 86 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 91132 Number of HSP's gapped (non-prelim): 3214 length of query: 399 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 377 effective length of database: 17,147,199,772 effective search space: 6464494314044 effective search space used: 6464494314044 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)