ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast55b03 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X75089.1|TAPETFFE Triticum aestivum petF gene for ferredoxin Length = 2244 Score = 739 bits (373), Expect = 0.0 Identities = 423/438 (96%), Gaps = 5/438 (1%) Strand = Plus / Plus Query: 19 ctcctcagccacacctagagcatcttagctccagctag----ccaccaatggccgccgca 74 |||||||||||||||||||||||||||||||| ||||| | | |||||||||||||| Sbjct: 1484 ctcctcagccacacctagagcatcttagctccggctaggtagctagcaatggccgccgca 1543 Query: 75 ctgagcctccgcgcgcccttctccgtgcgcgctgtggcgccaccggcgccccgcgtggcc 134 |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| Sbjct: 1544 ctgagcctccgcgcgcccttctccctgcgcgccgtggcgccaccggcgccccgcgtggcc 1603 Query: 135 cttgcgcccgcggccctcagcctcgccgccgccaagcaggtgcggggagccaggctccgc 194 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1604 ctcgcgcccgcggccctcagcctcgccgccgccaagcaggtgcggggagccaggctccgc 1663 Query: 195 gcgcaggcgacgtacaaggtgaagctggtgacgcccgagggcgaggtggagctggaggtc 254 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1664 gcccaggcgacgtacaaggtgaagctggtgacgcccgagggcgaggtggagctggaggtc 1723 Query: 255 cccgacgacgtctacatcctggaccaggccgaggaggagggcatcgacctgccctactcc 314 ||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct: 1724 cccgatgacgtctacatcctcgaccaggccgaggaggaggggatcgacctgccctactcc 1783 Query: 315 tgccgcgccggctcctgctcctcctgcgccggcaagttggtgtccggcgagatcgaccag 374 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1784 tgccgcgccggctcctgctcctcctgcgccggcaagttggtgtccggcgagatcgaccag 1843 Query: 375 tccgaccagagcttcctcgacgacgaccagatggaggcagggtgggtgctcacctgccac 434 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1844 tccgaccagagcttcctcgacgacgaccagatggaggcagggtgggtgctcacctgccac 1903 Query: 435 gccta-cccaagtccgac 451 ||||| |||||||||||| Sbjct: 1904 gcctaccccaagtccgac 1921
>ref|XM_479678.1| Oryza sativa (japonica cultivar-group), mRNA Length = 736 Score = 301 bits (152), Expect = 1e-78 Identities = 231/256 (90%), Gaps = 1/256 (0%) Strand = Plus / Plus Query: 197 gcaggcgacgtacaaggtgaagctggtgacgcccgagggcgaggtggagctggaggtccc 256 ||||||||||||||| ||||||||| | || || || ||||||||||||||| |||| || Sbjct: 208 gcaggcgacgtacaacgtgaagctgatcacaccggacggcgaggtggagctgcaggtgcc 267 Query: 257 cgacgacgtctacatcctggaccaggccgaggaggagggcatcgacctgccctactcctg 316 |||||||| ||||||||||||||||| |||||||| || ||||||||||| |||||||| Sbjct: 268 ggacgacgtgtacatcctggaccaggcggaggaggaagggatcgacctgccttactcctg 327 Query: 317 ccgcgccggctcctgctcctcctgcgccggcaagttggtgtccggcgagatcgaccagtc 376 |||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||| Sbjct: 328 ccgcgcgggctcctgctcctcctgcgccggcaaggtggtctccggcgagatcgaccagtc 387 Query: 377 cgaccagagcttcctcgacgacgaccagatggaggcagggtgggtgctcacctgccacgc 436 |||||||||||||||||||||||||||| | | || || ||||| |||||||||||||| Sbjct: 388 cgaccagagcttcctcgacgacgaccaggttgccgccggctgggtcctcacctgccacgc 447 Query: 437 cta-cccaagtccgac 451 ||| |||||||||||| Sbjct: 448 ctaccccaagtccgac 463
>ref|XM_507559.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1300_E01.1 mRNA Length = 737 Score = 301 bits (152), Expect = 1e-78 Identities = 231/256 (90%), Gaps = 1/256 (0%) Strand = Plus / Plus Query: 197 gcaggcgacgtacaaggtgaagctggtgacgcccgagggcgaggtggagctggaggtccc 256 ||||||||||||||| ||||||||| | || || || ||||||||||||||| |||| || Sbjct: 209 gcaggcgacgtacaacgtgaagctgatcacaccggacggcgaggtggagctgcaggtgcc 268 Query: 257 cgacgacgtctacatcctggaccaggccgaggaggagggcatcgacctgccctactcctg 316 |||||||| ||||||||||||||||| |||||||| || ||||||||||| |||||||| Sbjct: 269 ggacgacgtgtacatcctggaccaggcggaggaggaagggatcgacctgccttactcctg 328 Query: 317 ccgcgccggctcctgctcctcctgcgccggcaagttggtgtccggcgagatcgaccagtc 376 |||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||| Sbjct: 329 ccgcgcgggctcctgctcctcctgcgccggcaaggtggtctccggcgagatcgaccagtc 388 Query: 377 cgaccagagcttcctcgacgacgaccagatggaggcagggtgggtgctcacctgccacgc 436 |||||||||||||||||||||||||||| | | || || ||||| |||||||||||||| Sbjct: 389 cgaccagagcttcctcgacgacgaccaggttgccgccggctgggtcctcacctgccacgc 448 Query: 437 cta-cccaagtccgac 451 ||| |||||||||||| Sbjct: 449 ctaccccaagtccgac 464
>ref|XM_507558.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1300_E01.1 mRNA Length = 737 Score = 301 bits (152), Expect = 1e-78 Identities = 231/256 (90%), Gaps = 1/256 (0%) Strand = Plus / Plus Query: 197 gcaggcgacgtacaaggtgaagctggtgacgcccgagggcgaggtggagctggaggtccc 256 ||||||||||||||| ||||||||| | || || || ||||||||||||||| |||| || Sbjct: 209 gcaggcgacgtacaacgtgaagctgatcacaccggacggcgaggtggagctgcaggtgcc 268 Query: 257 cgacgacgtctacatcctggaccaggccgaggaggagggcatcgacctgccctactcctg 316 |||||||| ||||||||||||||||| |||||||| || ||||||||||| |||||||| Sbjct: 269 ggacgacgtgtacatcctggaccaggcggaggaggaagggatcgacctgccttactcctg 328 Query: 317 ccgcgccggctcctgctcctcctgcgccggcaagttggtgtccggcgagatcgaccagtc 376 |||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||| Sbjct: 329 ccgcgcgggctcctgctcctcctgcgccggcaaggtggtctccggcgagatcgaccagtc 388 Query: 377 cgaccagagcttcctcgacgacgaccagatggaggcagggtgggtgctcacctgccacgc 436 |||||||||||||||||||||||||||| | | || || ||||| |||||||||||||| Sbjct: 389 cgaccagagcttcctcgacgacgaccaggttgccgccggctgggtcctcacctgccacgc 448 Query: 437 cta-cccaagtccgac 451 ||| |||||||||||| Sbjct: 449 ctaccccaagtccgac 464
>ref|XM_507082.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ1300_E01.1 mRNA Length = 848 Score = 301 bits (152), Expect = 1e-78 Identities = 231/256 (90%), Gaps = 1/256 (0%) Strand = Plus / Plus Query: 197 gcaggcgacgtacaaggtgaagctggtgacgcccgagggcgaggtggagctggaggtccc 256 ||||||||||||||| ||||||||| | || || || ||||||||||||||| |||| || Sbjct: 210 gcaggcgacgtacaacgtgaagctgatcacaccggacggcgaggtggagctgcaggtgcc 269 Query: 257 cgacgacgtctacatcctggaccaggccgaggaggagggcatcgacctgccctactcctg 316 |||||||| ||||||||||||||||| |||||||| || ||||||||||| |||||||| Sbjct: 270 ggacgacgtgtacatcctggaccaggcggaggaggaagggatcgacctgccttactcctg 329 Query: 317 ccgcgccggctcctgctcctcctgcgccggcaagttggtgtccggcgagatcgaccagtc 376 |||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||| Sbjct: 330 ccgcgcgggctcctgctcctcctgcgccggcaaggtggtctccggcgagatcgaccagtc 389 Query: 377 cgaccagagcttcctcgacgacgaccagatggaggcagggtgggtgctcacctgccacgc 436 |||||||||||||||||||||||||||| | | || || ||||| |||||||||||||| Sbjct: 390 cgaccagagcttcctcgacgacgaccaggttgccgccggctgggtcctcacctgccacgc 449 Query: 437 cta-cccaagtccgac 451 ||| |||||||||||| Sbjct: 450 ctaccccaagtccgac 465
>gb|AY072818.1| Oryza sativa anti-disease protein 1 (ADI1) mRNA, complete cds Length = 729 Score = 301 bits (152), Expect = 1e-78 Identities = 231/256 (90%), Gaps = 1/256 (0%) Strand = Plus / Plus Query: 197 gcaggcgacgtacaaggtgaagctggtgacgcccgagggcgaggtggagctggaggtccc 256 ||||||||||||||| ||||||||| | || || || ||||||||||||||| |||| || Sbjct: 185 gcaggcgacgtacaacgtgaagctgatcacaccggacggcgaggtggagctgcaggtgcc 244 Query: 257 cgacgacgtctacatcctggaccaggccgaggaggagggcatcgacctgccctactcctg 316 |||||||| ||||||||||||||||| |||||||| || ||||||||||| |||||||| Sbjct: 245 ggacgacgtgtacatcctggaccaggcggaggaggaagggatcgacctgccttactcctg 304 Query: 317 ccgcgccggctcctgctcctcctgcgccggcaagttggtgtccggcgagatcgaccagtc 376 |||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||| Sbjct: 305 ccgcgcgggctcctgctcctcctgcgccggcaaggtggtctccggcgagatcgaccagtc 364 Query: 377 cgaccagagcttcctcgacgacgaccagatggaggcagggtgggtgctcacctgccacgc 436 |||||||||||||||||||||||||||| | | || || ||||| |||||||||||||| Sbjct: 365 cgaccagagcttcctcgacgacgaccaggttgccgccggctgggtcctcacctgccacgc 424 Query: 437 cta-cccaagtccgac 451 ||| |||||||||||| Sbjct: 425 ctaccccaagtccgac 440
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 301 bits (152), Expect = 1e-78 Identities = 231/256 (90%), Gaps = 1/256 (0%) Strand = Plus / Minus Query: 197 gcaggcgacgtacaaggtgaagctggtgacgcccgagggcgaggtggagctggaggtccc 256 ||||||||||||||| ||||||||| | || || || ||||||||||||||| |||| || Sbjct: 236073 gcaggcgacgtacaacgtgaagctgatcacaccggacggcgaggtggagctgcaggtgcc 236014 Query: 257 cgacgacgtctacatcctggaccaggccgaggaggagggcatcgacctgccctactcctg 316 |||||||| ||||||||||||||||| |||||||| || ||||||||||| |||||||| Sbjct: 236013 ggacgacgtgtacatcctggaccaggcggaggaggaagggatcgacctgccttactcctg 235954 Query: 317 ccgcgccggctcctgctcctcctgcgccggcaagttggtgtccggcgagatcgaccagtc 376 |||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||| Sbjct: 235953 ccgcgcgggctcctgctcctcctgcgccggcaaggtggtctccggcgagatcgaccagtc 235894 Query: 377 cgaccagagcttcctcgacgacgaccagatggaggcagggtgggtgctcacctgccacgc 436 |||||||||||||||||||||||||||| | | || || ||||| |||||||||||||| Sbjct: 235893 cgaccagagcttcctcgacgacgaccaggttgccgccggctgggtcctcacctgccacgc 235834 Query: 437 cta-cccaagtccgac 451 ||| |||||||||||| Sbjct: 235833 ctaccccaagtccgac 235818
>dbj|AP003909.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1300_E01 Length = 103022 Score = 301 bits (152), Expect = 1e-78 Identities = 231/256 (90%), Gaps = 1/256 (0%) Strand = Plus / Minus Query: 197 gcaggcgacgtacaaggtgaagctggtgacgcccgagggcgaggtggagctggaggtccc 256 ||||||||||||||| ||||||||| | || || || ||||||||||||||| |||| || Sbjct: 2499 gcaggcgacgtacaacgtgaagctgatcacaccggacggcgaggtggagctgcaggtgcc 2440 Query: 257 cgacgacgtctacatcctggaccaggccgaggaggagggcatcgacctgccctactcctg 316 |||||||| ||||||||||||||||| |||||||| || ||||||||||| |||||||| Sbjct: 2439 ggacgacgtgtacatcctggaccaggcggaggaggaagggatcgacctgccttactcctg 2380 Query: 317 ccgcgccggctcctgctcctcctgcgccggcaagttggtgtccggcgagatcgaccagtc 376 |||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||| Sbjct: 2379 ccgcgcgggctcctgctcctcctgcgccggcaaggtggtctccggcgagatcgaccagtc 2320 Query: 377 cgaccagagcttcctcgacgacgaccagatggaggcagggtgggtgctcacctgccacgc 436 |||||||||||||||||||||||||||| | | || || ||||| |||||||||||||| Sbjct: 2319 cgaccagagcttcctcgacgacgaccaggttgccgccggctgggtcctcacctgccacgc 2260 Query: 437 cta-cccaagtccgac 451 ||| |||||||||||| Sbjct: 2259 ctaccccaagtccgac 2244
>dbj|AK120393.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013075A06, full insert sequence Length = 848 Score = 301 bits (152), Expect = 1e-78 Identities = 231/256 (90%), Gaps = 1/256 (0%) Strand = Plus / Plus Query: 197 gcaggcgacgtacaaggtgaagctggtgacgcccgagggcgaggtggagctggaggtccc 256 ||||||||||||||| ||||||||| | || || || ||||||||||||||| |||| || Sbjct: 210 gcaggcgacgtacaacgtgaagctgatcacaccggacggcgaggtggagctgcaggtgcc 269 Query: 257 cgacgacgtctacatcctggaccaggccgaggaggagggcatcgacctgccctactcctg 316 |||||||| ||||||||||||||||| |||||||| || ||||||||||| |||||||| Sbjct: 270 ggacgacgtgtacatcctggaccaggcggaggaggaagggatcgacctgccttactcctg 329 Query: 317 ccgcgccggctcctgctcctcctgcgccggcaagttggtgtccggcgagatcgaccagtc 376 |||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||| Sbjct: 330 ccgcgcgggctcctgctcctcctgcgccggcaaggtggtctccggcgagatcgaccagtc 389 Query: 377 cgaccagagcttcctcgacgacgaccagatggaggcagggtgggtgctcacctgccacgc 436 |||||||||||||||||||||||||||| | | || || ||||| |||||||||||||| Sbjct: 390 cgaccagagcttcctcgacgacgaccaggttgccgccggctgggtcctcacctgccacgc 449 Query: 437 cta-cccaagtccgac 451 ||| |||||||||||| Sbjct: 450 ctaccccaagtccgac 465
>dbj|AK119709.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-157-E09, full insert sequence Length = 736 Score = 301 bits (152), Expect = 1e-78 Identities = 231/256 (90%), Gaps = 1/256 (0%) Strand = Plus / Plus Query: 197 gcaggcgacgtacaaggtgaagctggtgacgcccgagggcgaggtggagctggaggtccc 256 ||||||||||||||| ||||||||| | || || || ||||||||||||||| |||| || Sbjct: 208 gcaggcgacgtacaacgtgaagctgatcacaccggacggcgaggtggagctgcaggtgcc 267 Query: 257 cgacgacgtctacatcctggaccaggccgaggaggagggcatcgacctgccctactcctg 316 |||||||| ||||||||||||||||| |||||||| || ||||||||||| |||||||| Sbjct: 268 ggacgacgtgtacatcctggaccaggcggaggaggaagggatcgacctgccttactcctg 327 Query: 317 ccgcgccggctcctgctcctcctgcgccggcaagttggtgtccggcgagatcgaccagtc 376 |||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||| Sbjct: 328 ccgcgcgggctcctgctcctcctgcgccggcaaggtggtctccggcgagatcgaccagtc 387 Query: 377 cgaccagagcttcctcgacgacgaccagatggaggcagggtgggtgctcacctgccacgc 436 |||||||||||||||||||||||||||| | | || || ||||| |||||||||||||| Sbjct: 388 cgaccagagcttcctcgacgacgaccaggttgccgccggctgggtcctcacctgccacgc 447 Query: 437 cta-cccaagtccgac 451 ||| |||||||||||| Sbjct: 448 ctaccccaagtccgac 463
>dbj|AK119605.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-117-F01, full insert sequence Length = 1944 Score = 301 bits (152), Expect = 1e-78 Identities = 231/256 (90%), Gaps = 1/256 (0%) Strand = Plus / Plus Query: 197 gcaggcgacgtacaaggtgaagctggtgacgcccgagggcgaggtggagctggaggtccc 256 ||||||||||||||| ||||||||| | || || || ||||||||||||||| |||| || Sbjct: 210 gcaggcgacgtacaacgtgaagctgatcacaccggacggcgaggtggagctgcaggtgcc 269 Query: 257 cgacgacgtctacatcctggaccaggccgaggaggagggcatcgacctgccctactcctg 316 |||||||| ||||||||||||||||| |||||||| || ||||||||||| |||||||| Sbjct: 270 ggacgacgtgtacatcctggaccaggcggaggaggaagggatcgacctgccttactcctg 329 Query: 317 ccgcgccggctcctgctcctcctgcgccggcaagttggtgtccggcgagatcgaccagtc 376 |||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||| Sbjct: 330 ccgcgcgggctcctgctcctcctgcgccggcaaggtggtctccggcgagatcgaccagtc 389 Query: 377 cgaccagagcttcctcgacgacgaccagatggaggcagggtgggtgctcacctgccacgc 436 |||||||||||||||||||||||||||| | | || || ||||| |||||||||||||| Sbjct: 390 cgaccagagcttcctcgacgacgaccaggttgccgccggctgggtcctcacctgccacgc 449 Query: 437 cta-cccaagtccgac 451 ||| |||||||||||| Sbjct: 450 ctaccccaagtccgac 465
>dbj|AK119206.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-D12, full insert sequence Length = 746 Score = 301 bits (152), Expect = 1e-78 Identities = 231/256 (90%), Gaps = 1/256 (0%) Strand = Plus / Plus Query: 197 gcaggcgacgtacaaggtgaagctggtgacgcccgagggcgaggtggagctggaggtccc 256 ||||||||||||||| ||||||||| | || || || ||||||||||||||| |||| || Sbjct: 218 gcaggcgacgtacaacgtgaagctgatcacaccggacggcgaggtggagctgcaggtgcc 277 Query: 257 cgacgacgtctacatcctggaccaggccgaggaggagggcatcgacctgccctactcctg 316 |||||||| ||||||||||||||||| |||||||| || ||||||||||| |||||||| Sbjct: 278 ggacgacgtgtacatcctggaccaggcggaggaggaagggatcgacctgccttactcctg 337 Query: 317 ccgcgccggctcctgctcctcctgcgccggcaagttggtgtccggcgagatcgaccagtc 376 |||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||| Sbjct: 338 ccgcgcgggctcctgctcctcctgcgccggcaaggtggtctccggcgagatcgaccagtc 397 Query: 377 cgaccagagcttcctcgacgacgaccagatggaggcagggtgggtgctcacctgccacgc 436 |||||||||||||||||||||||||||| | | || || ||||| |||||||||||||| Sbjct: 398 cgaccagagcttcctcgacgacgaccaggttgccgccggctgggtcctcacctgccacgc 457 Query: 437 cta-cccaagtccgac 451 ||| |||||||||||| Sbjct: 458 ctaccccaagtccgac 473
>dbj|D30763.1|RICFERR Oryza sativa (japonica cultivar-group) mRNA for ferredoxin, complete cds Length = 755 Score = 301 bits (152), Expect = 1e-78 Identities = 231/256 (90%), Gaps = 1/256 (0%) Strand = Plus / Plus Query: 197 gcaggcgacgtacaaggtgaagctggtgacgcccgagggcgaggtggagctggaggtccc 256 ||||||||||||||| ||||||||| | || || || ||||||||||||||| |||| || Sbjct: 203 gcaggcgacgtacaacgtgaagctgatcacaccggacggcgaggtggagctgcaggtgcc 262 Query: 257 cgacgacgtctacatcctggaccaggccgaggaggagggcatcgacctgccctactcctg 316 |||||||| ||||||||||||||||| |||||||| || ||||||||||| |||||||| Sbjct: 263 ggacgacgtgtacatcctggaccaggcggaggaggaagggatcgacctgccttactcctg 322 Query: 317 ccgcgccggctcctgctcctcctgcgccggcaagttggtgtccggcgagatcgaccagtc 376 |||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||| Sbjct: 323 ccgcgcgggctcctgctcctcctgcgccggcaaggtggtctccggcgagatcgaccagtc 382 Query: 377 cgaccagagcttcctcgacgacgaccagatggaggcagggtgggtgctcacctgccacgc 436 |||||||||||||||||||||||||||| | | || || ||||| |||||||||||||| Sbjct: 383 cgaccagagcttcctcgacgacgaccaggttgccgccggctgggtcctcacctgccacgc 442 Query: 437 cta-cccaagtccgac 451 ||| |||||||||||| Sbjct: 443 ctaccccaagtccgac 458
>dbj|AK061654.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-C09, full insert sequence Length = 737 Score = 293 bits (148), Expect = 3e-76 Identities = 230/256 (89%), Gaps = 1/256 (0%) Strand = Plus / Plus Query: 197 gcaggcgacgtacaaggtgaagctggtgacgcccgagggcgaggtggagctggaggtccc 256 ||||||||||||||| ||||||||| | || || || ||||||||||||||| |||| || Sbjct: 209 gcaggcgacgtacaacgtgaagctgatcacaccggacggcgaggtggagctgcaggtgcc 268 Query: 257 cgacgacgtctacatcctggaccaggccgaggaggagggcatcgacctgccctactcctg 316 |||||||| |||||||||| |||||| |||||||| || ||||||||||| |||||||| Sbjct: 269 ggacgacgtgtacatcctgggccaggcggaggaggaagggatcgacctgccttactcctg 328 Query: 317 ccgcgccggctcctgctcctcctgcgccggcaagttggtgtccggcgagatcgaccagtc 376 |||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||| Sbjct: 329 ccgcgcgggctcctgctcctcctgcgccggcaaggtggtctccggcgagatcgaccagtc 388 Query: 377 cgaccagagcttcctcgacgacgaccagatggaggcagggtgggtgctcacctgccacgc 436 |||||||||||||||||||||||||||| | | || || ||||| |||||||||||||| Sbjct: 389 cgaccagagcttcctcgacgacgaccaggttgccgccggctgggtcctcacctgccacgc 448 Query: 437 cta-cccaagtccgac 451 ||| |||||||||||| Sbjct: 449 ctaccccaagtccgac 464
>gb|AY103722.1| Zea mays PCO142214 mRNA sequence Length = 938 Score = 281 bits (142), Expect = 1e-72 Identities = 229/258 (88%) Strand = Plus / Plus Query: 185 caggctccgcgcgcaggcgacgtacaaggtgaagctggtgacgcccgagggcgaggtgga 244 |||||| ||||||||||| || ||||| ||||||||| | ||||| ||||| |||||||| Sbjct: 388 caggctgcgcgcgcaggccacctacaacgtgaagctgatcacgccggagggggaggtgga 447 Query: 245 gctggaggtccccgacgacgtctacatcctggaccaggccgaggaggagggcatcgacct 304 |||| |||| ||||||||||| |||||||||||||||||||||||||| ||||||||||| Sbjct: 448 gctgcaggtgcccgacgacgtgtacatcctggaccaggccgaggaggacggcatcgacct 507 Query: 305 gccctactcctgccgcgccggctcctgctcctcctgcgccggcaagttggtgtccggcga 364 |||||||||||||||||| || |||||||||||||||||||||||| | || |||||| Sbjct: 508 gccctactcctgccgcgcggggtcctgctcctcctgcgccggcaaggtcgtctccggctc 567 Query: 365 gatcgaccagtccgaccagagcttcctcgacgacgaccagatggaggcagggtgggtgct 424 | ||||||||||||||||||| ||||||||||| |||||| | || || |||||||| Sbjct: 568 cgtggaccagtccgaccagagctacctcgacgacggccagatcgccgccggctgggtgct 627 Query: 425 cacctgccacgcctaccc 442 |||||||||||||||||| Sbjct: 628 cacctgccacgcctaccc 645
>gb|M73830.1|MZEFD1P Maize ferredoxin I (Fd) isoprotein mRNA, pFD1' Length = 757 Score = 266 bits (134), Expect = 6e-68 Identities = 227/258 (87%) Strand = Plus / Plus Query: 185 caggctccgcgcgcaggcgacgtacaaggtgaagctggtgacgcccgagggcgaggtgga 244 |||||| ||||||||||| || ||||| ||||||||| | ||||| ||||| |||||||| Sbjct: 229 caggctgcgcgcgcaggccacctacaacgtgaagctgatcacgccggagggggaggtgga 288 Query: 245 gctggaggtccccgacgacgtctacatcctggaccaggccgaggaggagggcatcgacct 304 |||| |||| ||||||||||| |||||||||||||||||||||||||| ||||||||||| Sbjct: 289 gctgcaggtgcccgacgacgtgtacatcctggaccaggccgaggaggacggcatcgacct 348 Query: 305 gccctactcctgccgcgccggctcctgctcctcctgcgccggcaagttggtgtccggcga 364 |||||||||||||||||| || ||||||||||| |||||||||||| | || |||||| Sbjct: 349 gccctactcctgccgcgcggggtcctgctcctcgtgcgccggcaaggtcgtctccggctc 408 Query: 365 gatcgaccagtccgaccagagcttcctcgacgacgaccagatggaggcagggtgggtgct 424 | ||||||||||||||||||| ||||||||||| |||||| | | || |||||||| Sbjct: 409 cgtggaccagtccgaccagagctacctcgacgacggccagatcgccgacggctgggtgct 468 Query: 425 cacctgccacgcctaccc 442 |||||||||||||||||| Sbjct: 469 cacctgccacgcctaccc 486
>gb|M73829.1|MZEFD1 Maize ferredoxin I (Fd) isoprotein mRNA, pFD1 Length = 684 Score = 266 bits (134), Expect = 6e-68 Identities = 227/258 (87%) Strand = Plus / Plus Query: 185 caggctccgcgcgcaggcgacgtacaaggtgaagctggtgacgcccgagggcgaggtgga 244 |||||| ||||||||||| || ||||| ||||||||| | ||||| ||||| |||||||| Sbjct: 179 caggctgcgcgcgcaggccacctacaacgtgaagctgatcacgccagagggggaggtgga 238 Query: 245 gctggaggtccccgacgacgtctacatcctggaccaggccgaggaggagggcatcgacct 304 |||| |||| ||||||||||| |||||||||||||||||||||||||| ||||||||||| Sbjct: 239 gctgcaggtgcccgacgacgtgtacatcctggaccaggccgaggaggacggcatcgacct 298 Query: 305 gccctactcctgccgcgccggctcctgctcctcctgcgccggcaagttggtgtccggcga 364 |||||||||||||||||| || ||||||||||| |||||||||||| | || |||||| Sbjct: 299 gccctactcctgccgcgcggggtcctgctcctcgtgcgccggcaaggtcgtctccggctc 358 Query: 365 gatcgaccagtccgaccagagcttcctcgacgacgaccagatggaggcagggtgggtgct 424 | ||||||||||||||||||| ||||||||||| |||||| | | || |||||||| Sbjct: 359 cgtggaccagtccgaccagagctacctcgacgacggccagatcgccgacggctgggtgct 418 Query: 425 cacctgccacgcctaccc 442 |||||||||||||||||| Sbjct: 419 cacctgccacgcctaccc 436
>gb|M73828.1|MZEFD5 Maize ferredoxin (Fd) isoprotein mRNA, pFD5 Length = 616 Score = 242 bits (122), Expect = 8e-61 Identities = 191/214 (89%) Strand = Plus / Plus Query: 185 caggctccgcgcgcaggcgacgtacaaggtgaagctggtgacgcccgagggcgaggtgga 244 |||||| ||||||||||| || ||||| |||||||| | ||||| ||||| |||||||| Sbjct: 137 caggctgcgcgcgcaggccacctacaacgtgaagctcatcacgccggagggggaggtgga 196 Query: 245 gctggaggtccccgacgacgtctacatcctggaccaggccgaggaggagggcatcgacct 304 |||| |||| |||||||||||||||||||||||| | ||||||||||| ||||||||||| Sbjct: 197 gctgcaggtgcccgacgacgtctacatcctggactacgccgaggaggaaggcatcgacct 256 Query: 305 gccctactcctgccgcgccggctcctgctcctcctgcgccggcaagttggtgtccggcga 364 |||||||||||||||||| || |||||||||||||||||||||||| | || |||||| Sbjct: 257 gccctactcctgccgcgcggggtcctgctcctcctgcgccggcaaggtcgtctccggctc 316 Query: 365 gatcgaccagtccgaccagagcttcctcgacgac 398 |||||||||||||||||||||||||||||||| Sbjct: 317 cctcgaccagtccgaccagagcttcctcgacgac 350
>dbj|AB016810.1| Zea mays mRNA for ferredoxin, complete cds Length = 765 Score = 216 bits (109), Expect = 5e-53 Identities = 187/213 (87%) Strand = Plus / Plus Query: 192 cgcgcgcaggcgacgtacaaggtgaagctggtgacgcccgagggcgaggtggagctggag 251 ||||||||||| || ||||| ||||||||| | ||||| ||||| |||||||||||| || Sbjct: 183 cgcgcgcaggccacctacaacgtgaagctgatcacgccggagggggaggtggagctgcag 242 Query: 252 gtccccgacgacgtctacatcctggaccaggccgaggaggagggcatcgacctgccctac 311 || ||||||||||||||||| |||||| ||||||||||| |||||||||||||||| | Sbjct: 243 gtgcccgacgacgtctacatactggacttcgccgaggaggaaggcatcgacctgcccttc 302 Query: 312 tcctgccgcgccggctcctgctcctcctgcgccggcaagttggtgtccggcgagatcgac 371 ||||||||||| || |||||||||||||||||||||||| | || |||||| ||||| Sbjct: 303 tcctgccgcgcggggtcctgctcctcctgcgccggcaaggtcgtctccggctccgtcgac 362 Query: 372 cagtccgaccagagcttcctcgacgacgaccag 404 ||||||||||||||||||||| ||||| ||||| Sbjct: 363 cagtccgaccagagcttcctcaacgacaaccag 395
>gb|AF010320.1|AF010320 Oryza sativa ferredoxin mRNA, complete cds Length = 849 Score = 190 bits (96), Expect = 3e-45 Identities = 171/196 (87%) Strand = Plus / Plus Query: 197 gcaggcgacgtacaaggtgaagctggtgacgcccgagggcgaggtggagctggaggtccc 256 ||||||||||||||| ||||||||| | || || || ||||||||||| ||| |||| || Sbjct: 203 gcaggcgacgtacaacgtgaagctgatcacaccggacggcgaggtggaactgcaggtgcc 262 Query: 257 cgacgacgtctacatcctggaccaggccgaggaggagggcatcgacctgccctactcctg 316 ||| |||| | ||||||||||||||| |||||||| || ||||||||||| |||||||| Sbjct: 263 ggacaacgtgttcatcctggaccaggcggaggaggaagggatcgacctgccttactcctg 322 Query: 317 ccgcgccggctcctgctcctcctgcgccggcaagttggtgtccggcgagatcgaccagtc 376 |||||| ||||||||||||||||||||||||||| |||| |||||||| ||| |||| || Sbjct: 323 ccgcgcgggctcctgctcctcctgcgccggcaaggtggtctccggcgaaatcaaccaatc 382 Query: 377 cgaccagagcttcctc 392 |||||| | ||||||| Sbjct: 383 cgaccaaaacttcctc 398
>gb|AY108480.1| Zea mays PCO090770 mRNA sequence Length = 737 Score = 141 bits (71), Expect = 2e-30 Identities = 133/151 (88%), Gaps = 2/151 (1%) Strand = Plus / Plus Query: 255 cccgacgacgtctacatcctggaccaggccgaggag-gagggcatcgacctgccctactc 313 |||| ||||||||||||||||||||| |||||||| ||||| | |||||||||||||| Sbjct: 337 cccggcgacgtctacatcctggaccatgccgaggaacgagggt-tggacctgccctactc 395 Query: 314 ctgccgcgccggctcctgctcctcctgcgccggcaagttggtgtccggcgagatcgacca 373 ||||||||||||| ||||||||||||||| ||||||| | || |||||| || |||| Sbjct: 396 ctgccgcgccggcgcctgctcctcctgcgtcggcaagatcgtctccggctccgtcaacca 455 Query: 374 gtccgaccagagcttcctcgacgacgaccag 404 || |||||||||||||||||||||||||||| Sbjct: 456 gttcgaccagagcttcctcgacgacgaccag 486
>gb|AY826848.1| Heterocapsa triquetra clone HTF2 chloroplast ferredoxin mRNA, complete cds; nuclear gene for chloroplast product Length = 650 Score = 109 bits (55), Expect = 8e-21 Identities = 79/87 (90%) Strand = Plus / Plus Query: 264 gtctacatcctggaccaggccgaggaggagggcatcgacctgccctactcctgccgcgcc 323 |||||||| ||||||||||||||||||||||| ||||| ||||| |||||||||||||| Sbjct: 279 gtctacattctggaccaggccgaggaggagggtatcgagctgccttactcctgccgcgcg 338 Query: 324 ggctcctgctcctcctgcgccggcaag 350 |||||||||||| |||||| |||||| Sbjct: 339 ggctcctgctccagctgcgcgggcaag 365
>gb|AY826851.1| Pavlova lutheri clone PLF2 chloroplast ferredixon mRNA, partial cds; nuclear gene for chloroplast product Length = 736 Score = 103 bits (52), Expect = 5e-19 Identities = 121/144 (84%) Strand = Plus / Plus Query: 267 tacatcctggaccaggccgaggaggagggcatcgacctgccctactcctgccgcgccggc 326 |||||||| ||| |||| |||||||||||||| ||||| || ||||| |||||||||||| Sbjct: 192 tacatcctcgacaaggcggaggaggagggcattgacctcccgtactcgtgccgcgccggc 251 Query: 327 tcctgctcctcctgcgccggcaagttggtgtccggcgagatcgaccagtccgaccagagc 386 | |||||| ||||| ||||||| | | ||||||| ||||||||||||||||| Sbjct: 252 gcgtgctccacctgctgcggcaaggtcgcgtccggcaccgtcgaccagtccgaccagtcg 311 Query: 387 ttcctcgacgacgaccagatggag 410 ||||||||||||| |||||||||| Sbjct: 312 ttcctcgacgacggccagatggag 335
>gb|AY826847.1| Heterocapsa triquetra clone HTF1 chloroplast ferredoxin mRNA, complete cds; nuclear gene for chloroplast product Length = 622 Score = 101 bits (51), Expect = 2e-18 Identities = 78/87 (89%) Strand = Plus / Plus Query: 264 gtctacatcctggaccaggccgaggaggagggcatcgacctgccctactcctgccgcgcc 323 ||||||||| ||||||| || ||||||||||| ||||| |||||||||||||||||||| Sbjct: 293 gtctacatcttggaccaagcagaggaggagggtatcgagctgccctactcctgccgcgcg 352 Query: 324 ggctcctgctcctcctgcgccggcaag 350 |||||||||||| |||||| |||||| Sbjct: 353 ggctcctgctccagctgcgcgggcaag 379
>ref|XM_472400.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 459 Score = 89.7 bits (45), Expect = 7e-15 Identities = 75/85 (88%) Strand = Plus / Plus Query: 266 ctacatcctggaccaggccgaggaggagggcatcgacctgccctactcctgccgcgccgg 325 ||||||||||||| ||||||||| | ||| |||||||||||||||| ||||||||||| Sbjct: 234 ctacatcctggacgcggccgaggaagccggcgtcgacctgccctactcgtgccgcgccgg 293 Query: 326 ctcctgctcctcctgcgccggcaag 350 | | |||||| |||||||||||||| Sbjct: 294 cgcgtgctccacctgcgccggcaag 318
>emb|AL662947.3|OSJN00148 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0073L04, complete sequence Length = 143301 Score = 89.7 bits (45), Expect = 7e-15 Identities = 75/85 (88%) Strand = Plus / Plus Query: 266 ctacatcctggaccaggccgaggaggagggcatcgacctgccctactcctgccgcgccgg 325 ||||||||||||| ||||||||| | ||| |||||||||||||||| ||||||||||| Sbjct: 108443 ctacatcctggacgcggccgaggaagccggcgtcgacctgccctactcgtgccgcgccgg 108502 Query: 326 ctcctgctcctcctgcgccggcaag 350 | | |||||| |||||||||||||| Sbjct: 108503 cgcgtgctccacctgcgccggcaag 108527
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 89.7 bits (45), Expect = 7e-15 Identities = 75/85 (88%) Strand = Plus / Plus Query: 266 ctacatcctggaccaggccgaggaggagggcatcgacctgccctactcctgccgcgccgg 325 ||||||||||||| ||||||||| | ||| |||||||||||||||| ||||||||||| Sbjct: 20377810 ctacatcctggacgcggccgaggaagccggcgtcgacctgccctactcgtgccgcgccgg 20377869 Query: 326 ctcctgctcctcctgcgccggcaag 350 | | |||||| |||||||||||||| Sbjct: 20377870 cgcgtgctccacctgcgccggcaag 20377894 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 312 tcctgccgcgccggctcctgctcc 335 |||||||| ||||||||||||||| Sbjct: 35479350 tcctgccgtgccggctcctgctcc 35479327
>gb|AY826849.1| Isochrysis galbana clone ISF1 chloroplast ferredoxin mRNA, partial cds; nuclear gene for chloroplast product Length = 764 Score = 89.7 bits (45), Expect = 7e-15 Identities = 75/85 (88%) Strand = Plus / Plus Query: 266 ctacatcctggaccaggccgaggaggagggcatcgacctgccctactcctgccgcgccgg 325 ||||||||| ||| ||||||||||||| |||||||||||||| ||||| |||||||| || Sbjct: 180 ctacatcctcgacaaggccgaggaggacggcatcgacctgccgtactcgtgccgcgcggg 239 Query: 326 ctcctgctcctcctgcgccggcaag 350 | ||||||| ||||||| |||||| Sbjct: 240 cgcctgctcgacctgcgcgggcaag 264 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 387 ttcctcgacgacgaccagatgg 408 |||||||||||||||||||||| Sbjct: 301 ttcctcgacgacgaccagatgg 322
>dbj|AK120232.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013043H21, full insert sequence Length = 835 Score = 89.7 bits (45), Expect = 7e-15 Identities = 75/85 (88%) Strand = Plus / Plus Query: 266 ctacatcctggaccaggccgaggaggagggcatcgacctgccctactcctgccgcgccgg 325 ||||||||||||| ||||||||| | ||| |||||||||||||||| ||||||||||| Sbjct: 429 ctacatcctggacgcggccgaggaagccggcgtcgacctgccctactcgtgccgcgccgg 488 Query: 326 ctcctgctcctcctgcgccggcaag 350 | | |||||| |||||||||||||| Sbjct: 489 cgcgtgctccacctgcgccggcaag 513
>dbj|AK062016.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-043-F06, full insert sequence Length = 752 Score = 89.7 bits (45), Expect = 7e-15 Identities = 75/85 (88%) Strand = Plus / Plus Query: 266 ctacatcctggaccaggccgaggaggagggcatcgacctgccctactcctgccgcgccgg 325 ||||||||||||| ||||||||| | ||| |||||||||||||||| ||||||||||| Sbjct: 392 ctacatcctggacgcggccgaggaagccggcgtcgacctgccctactcgtgccgcgccgg 451 Query: 326 ctcctgctcctcctgcgccggcaag 350 | | |||||| |||||||||||||| Sbjct: 452 cgcgtgctccacctgcgccggcaag 476
>emb|BX569690.1| Synechococcus sp. WH8102 complete genome; segment 2/7 Length = 349652 Score = 85.7 bits (43), Expect = 1e-13 Identities = 55/59 (93%) Strand = Plus / Plus Query: 292 agggcatcgacctgccctactcctgccgcgccggctcctgctcctcctgcgccggcaag 350 ||||||||||||||||||||||||||||||| ||| | |||||| |||||||||||||| Sbjct: 180341 agggcatcgacctgccctactcctgccgcgctggcgcttgctccacctgcgccggcaag 180399 Score = 65.9 bits (33), Expect = 1e-07 Identities = 57/65 (87%) Strand = Plus / Plus Query: 367 tcgaccagtccgaccagagcttcctcgacgacgaccagatggaggcagggtgggtgctca 426 |||| |||||||||||||||||||| |||||||||||||| || || || | ||||||| Sbjct: 180416 tcgatcagtccgaccagagcttcctggacgacgaccagatcgaagccggtttcgtgctca 180475 Query: 427 cctgc 431 ||||| Sbjct: 180476 cctgc 180480
>gb|AY107646.1| Zea mays PCO072676 mRNA sequence Length = 941 Score = 75.8 bits (38), Expect = 1e-10 Identities = 89/106 (83%) Strand = Plus / Plus Query: 303 ctgccctactcctgccgcgccggctcctgctcctcctgcgccggcaagttggtgtccggc 362 ||||||| ||||||||||||||| ||||||||| |||||||||| | | || | ||||| Sbjct: 436 ctgcccttctcctgccgcgccgggtcctgctccacctgcgccgggaggatgtcggccggc 495 Query: 363 gagatcgaccagtccgaccagagcttcctcgacgacgaccagatgg 408 ||| |||||||||| || | |||||||||||||| |||||||| Sbjct: 496 gaggtcgaccagtcggaggggtccttcctcgacgacggccagatgg 541
>dbj|AB001386.1| Maize DNA for Fd VI, complete cds Length = 2351 Score = 75.8 bits (38), Expect = 1e-10 Identities = 89/106 (83%) Strand = Plus / Plus Query: 303 ctgccctactcctgccgcgccggctcctgctcctcctgcgccggcaagttggtgtccggc 362 ||||||| ||||||||||||||| ||||||||| |||||||||| | | || | ||||| Sbjct: 1860 ctgcccttctcctgccgcgccgggtcctgctccacctgcgccgggaggatgtcggccggc 1919 Query: 363 gagatcgaccagtccgaccagagcttcctcgacgacgaccagatgg 408 ||| |||||||||| || | |||||||||||||| |||||||| Sbjct: 1920 gaggtcgaccagtcggaggggtccttcctcgacgacggccagatgg 1965
>dbj|AB001385.1| Maize mRNA for Fd VI, complete cds Length = 845 Score = 75.8 bits (38), Expect = 1e-10 Identities = 89/106 (83%) Strand = Plus / Plus Query: 303 ctgccctactcctgccgcgccggctcctgctcctcctgcgccggcaagttggtgtccggc 362 ||||||| ||||||||||||||| ||||||||| |||||||||| | | || | ||||| Sbjct: 434 ctgcccttctcctgccgcgccgggtcctgctccacctgcgccgggaggatgtcggccggc 493 Query: 363 gagatcgaccagtccgaccagagcttcctcgacgacgaccagatgg 408 ||| |||||||||| || | |||||||||||||| |||||||| Sbjct: 494 gaggtcgaccagtcggaggggtccttcctcgacgacggccagatgg 539
>gb|AY111751.1| Zea mays CL56157_1 mRNA sequence Length = 424 Score = 73.8 bits (37), Expect = 4e-10 Identities = 49/53 (92%) Strand = Plus / Minus Query: 298 tcgacctgccctactcctgccgcgccggctcctgctcctcctgcgccggcaag 350 ||||||||||||||||||||||||||||| | |||||| | |||||||||||| Sbjct: 347 tcgacctgccctactcctgccgcgccggcgcgtgctccacgtgcgccggcaag 295
>gb|CP000110.1| Synechococcus sp. CC9605, complete genome Length = 2510659 Score = 69.9 bits (35), Expect = 7e-09 Identities = 53/59 (89%) Strand = Plus / Minus Query: 292 agggcatcgacctgccctactcctgccgcgccggctcctgctcctcctgcgccggcaag 350 ||||||||||||| ||||||||||||||||| || | |||||| |||||||||||||| Sbjct: 1967200 agggcatcgacctcccctactcctgccgcgctggagcttgctccacctgcgccggcaag 1967142 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Minus Query: 367 tcgaccagtccgaccagagcttcctcgacgacgaccagat 406 |||| ||||| |||||||||||||| |||||||||||||| Sbjct: 1967125 tcgatcagtctgaccagagcttcctggacgacgaccagat 1967086
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 69.9 bits (35), Expect = 7e-09 Identities = 80/95 (84%) Strand = Plus / Plus Query: 282 gccgaggaggagggcatcgacctgccctactcctgccgcgccggctcctgctcctcctgc 341 |||||||||| ||| | || ||||| ||||| ||||| |||||||| |||||| | ||| Sbjct: 37234999 gccgaggaggccggcctggagctgccttactcgtgccgggccggctcgtgctccacgtgc 37235058 Query: 342 gccggcaagttggtgtccggcgagatcgaccagtc 376 ||||||||| ||| ||||||||| |||||||||| Sbjct: 37235059 gccggcaagctggcctccggcgaggtcgaccagtc 37235093
>dbj|AP003794.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0489B03 Length = 150381 Score = 69.9 bits (35), Expect = 7e-09 Identities = 80/95 (84%) Strand = Plus / Plus Query: 282 gccgaggaggagggcatcgacctgccctactcctgccgcgccggctcctgctcctcctgc 341 |||||||||| ||| | || ||||| ||||| ||||| |||||||| |||||| | ||| Sbjct: 109655 gccgaggaggccggcctggagctgccttactcgtgccgggccggctcgtgctccacgtgc 109714 Query: 342 gccggcaagttggtgtccggcgagatcgaccagtc 376 ||||||||| ||| ||||||||| |||||||||| Sbjct: 109715 gccggcaagctggcctccggcgaggtcgaccagtc 109749
>dbj|AP003287.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0679C12 Length = 153666 Score = 69.9 bits (35), Expect = 7e-09 Identities = 80/95 (84%) Strand = Plus / Plus Query: 282 gccgaggaggagggcatcgacctgccctactcctgccgcgccggctcctgctcctcctgc 341 |||||||||| ||| | || ||||| ||||| ||||| |||||||| |||||| | ||| Sbjct: 71988 gccgaggaggccggcctggagctgccttactcgtgccgggccggctcgtgctccacgtgc 72047 Query: 342 gccggcaagttggtgtccggcgagatcgaccagtc 376 ||||||||| ||| ||||||||| |||||||||| Sbjct: 72048 gccggcaagctggcctccggcgaggtcgaccagtc 72082
>dbj|AK119310.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-130-G06, full insert sequence Length = 3419 Score = 69.9 bits (35), Expect = 7e-09 Identities = 80/95 (84%) Strand = Plus / Minus Query: 282 gccgaggaggagggcatcgacctgccctactcctgccgcgccggctcctgctcctcctgc 341 |||||||||| ||| | || ||||| ||||| ||||| |||||||| |||||| | ||| Sbjct: 596 gccgaggaggccggcctggagctgccttactcgtgccgggccggctcgtgctccacgtgc 537 Query: 342 gccggcaagttggtgtccggcgagatcgaccagtc 376 ||||||||| ||| ||||||||| |||||||||| Sbjct: 536 gccggcaagctggcctccggcgaggtcgaccagtc 502
>dbj|AK069860.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023035H08, full insert sequence Length = 911 Score = 69.9 bits (35), Expect = 7e-09 Identities = 80/95 (84%) Strand = Plus / Plus Query: 282 gccgaggaggagggcatcgacctgccctactcctgccgcgccggctcctgctcctcctgc 341 |||||||||| ||| | || ||||| ||||| ||||| |||||||| |||||| | ||| Sbjct: 585 gccgaggaggccggcctggagctgccttactcgtgccgggccggctcgtgctccacgtgc 644 Query: 342 gccggcaagttggtgtccggcgagatcgaccagtc 376 ||||||||| ||| ||||||||| |||||||||| Sbjct: 645 gccggcaagctggcctccggcgaggtcgaccagtc 679
>gb|CP000097.1| Synechococcus sp. CC9902, complete genome Length = 2234828 Score = 63.9 bits (32), Expect = 4e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 294 ggcatcgacctgccctactcctgccgcgccggctcctgctcctcctgcgccggcaa 349 |||||||||||||| |||||||||||||| ||| | |||||| ||||||| ||||| Sbjct: 540400 ggcatcgacctgccttactcctgccgcgctggcgcttgctccacctgcgctggcaa 540455 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 372 cagtccgaccagagcttcctcgacgacgaccagat 406 |||||||||||||||||||| |||||||| ||||| Sbjct: 540478 cagtccgaccagagcttcctggacgacgatcagat 540512
>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome Length = 2932766 Score = 63.9 bits (32), Expect = 4e-07 Identities = 53/60 (88%) Strand = Plus / Minus Query: 297 atcgacctgccctactcctgccgcgccggctcctgctcctcctgcgccggcaagttggtg 356 ||||||||||||||||||||||||||||| ||||||| |||| || |||||| ||||| Sbjct: 1432045 atcgacctgccctactcctgccgcgccggagcctgctcgacctgtgctggcaagctggtg 1431986
>gb|DQ122892.1| Chlamydomonas incerta chloroplast ferredoxin (PetF) mRNA, complete cds; nuclear gene for chloroplast product Length = 619 Score = 61.9 bits (31), Expect = 2e-06 Identities = 115/143 (80%) Strand = Plus / Plus Query: 266 ctacatcctggaccaggccgaggaggagggcatcgacctgccctactcctgccgcgccgg 325 ||||||||||||| || ||||||| ||| | |||||||||||||| |||||||| || Sbjct: 186 ctacatcctggacgctgctgaggaggctggcctggacctgccctactcttgccgcgctgg 245 Query: 326 ctcctgctcctcctgcgccggcaagttggtgtccggcgagatcgaccagtccgaccagag 385 | |||||| ||||||||||||| ||| ||||| ||||||||||||||||| Sbjct: 246 tgcttgctccagctgcgccggcaaggtggctgccggcaccgtcgaccagtccgaccagtc 305 Query: 386 cttcctcgacgacgaccagatgg 408 |||||| || |||| |||||||| Sbjct: 306 cttcctggatgacgcccagatgg 328
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 58.0 bits (29), Expect = 3e-05 Identities = 50/57 (87%) Strand = Plus / Plus Query: 300 gacctgccctactcctgccgcgccggctcctgctcctcctgcgccggcaagttggtg 356 |||||||||| |||||||||||| ||| ||||||| |||| ||||||||| ||||| Sbjct: 3822134 gacctgcccttctcctgccgcgcgggcgcctgctcgacctgtgccggcaagatggtg 3822190
>gb|AY616100.1| Prototheca wickerhamii plastid ferroredoxin-like mRNA, partial sequence Length = 450 Score = 58.0 bits (29), Expect = 3e-05 Identities = 92/113 (81%) Strand = Plus / Plus Query: 298 tcgacctgccctactcctgccgcgccggctcctgctcctcctgcgccggcaagttggtgt 357 ||||||| ||||||||||||||| | || |||||||| |||||| || ||| | |||| Sbjct: 297 tcgacctaccctactcctgccgctctgggacctgctccacctgcgttgggaaggttgtgt 356 Query: 358 ccggcgagatcgaccagtccgaccagagcttcctcgacgacgaccagatggag 410 | || ||| | || ||| ||| ||||||||||| ||||||| |||||||||| Sbjct: 357 ctggtgagctggatcagagcgatcagagcttcctagacgacgcccagatggag 409
>gb|DQ360407.1| Chlamydomonas reinhardtii clone 1112084B10 putative ferredoxin (PetF2) mRNA, complete cds Length = 976 Score = 54.0 bits (27), Expect = 4e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 282 gccgaggaggagggcatcgacctgccctactcctgccgc 320 |||||||||| |||||| |||||||||||||| |||||| Sbjct: 243 gccgaggaggcgggcatggacctgccctactcgtgccgc 281
>emb|BX569692.1| Synechococcus sp. WH8102 complete genome; segment 4/7 Length = 345997 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 369 gaccagtccgaccagagcttcctcgacgacgaccagat 406 |||||| |||||||||||||||| |||||||| ||||| Sbjct: 288642 gaccagaccgaccagagcttcctggacgacgatcagat 288605 Score = 48.1 bits (24), Expect = 0.025 Identities = 42/48 (87%) Strand = Plus / Minus Query: 303 ctgccctactcctgccgcgccggctcctgctcctcctgcgccggcaag 350 ||||||||||||||||| || || |||||||| |||| ||||||||| Sbjct: 288708 ctgccctactcctgccgagctggagcctgctccacctgtgccggcaag 288661
>gb|AC103876.2| Homo sapiens chromosome 15, clone CTD-2282O12, complete sequence Length = 113199 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Plus Query: 139 cgcccgcggccctcagcctcgccgccgcc 167 |||||||||||| |||||||||||||||| Sbjct: 93745 cgcccgcggcccccagcctcgccgccgcc 93773
>gb|AC040930.6| Homo sapiens chromosome 15, clone CTD-2006N8, complete sequence Length = 113031 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Minus Query: 139 cgcccgcggccctcagcctcgccgccgcc 167 |||||||||||| |||||||||||||||| Sbjct: 110803 cgcccgcggcccccagcctcgccgccgcc 110775
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 50.1 bits (25), Expect = 0.006 Identities = 25/25 (100%) Strand = Plus / Plus Query: 320 cgccggctcctgctcctcctgcgcc 344 ||||||||||||||||||||||||| Sbjct: 1902559 cgccggctcctgctcctcctgcgcc 1902583
>gb|L10349.1|CREFERREDO Chlamydomonas reinhardtii ferredoxin mRNA, complete cds Length = 527 Score = 50.1 bits (25), Expect = 0.006 Identities = 70/85 (82%) Strand = Plus / Plus Query: 266 ctacatcctggaccaggccgaggaggagggcatcgacctgccctactcctgccgcgccgg 325 ||||||||||||| || ||||||| ||| | |||||||||||||| |||||||| || Sbjct: 167 ctacatcctggacgctgctgaggaggccggcctggacctgccctactcttgccgcgctgg 226 Query: 326 ctcctgctcctcctgcgccggcaag 350 | |||||| ||||||||||||| Sbjct: 227 tgcttgctccagctgcgccggcaag 251
>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome Length = 3046682 Score = 48.1 bits (24), Expect = 0.025 Identities = 51/60 (85%) Strand = Plus / Plus Query: 297 atcgacctgccctactcctgccgcgccggctcctgctcctcctgcgccggcaagttggtg 356 ||||| |||||||| |||||||||||||| |||| || |||| ||||||||| ||||| Sbjct: 1672998 atcgagctgccctattcctgccgcgccggtgcctgttcgacctgtgccggcaagctggtg 1673057
>gb|AY189833.1| Helianthus annuus ferredoxin (FER1) mRNA, complete cds Length = 571 Score = 46.1 bits (23), Expect = 0.100 Identities = 50/59 (84%) Strand = Plus / Plus Query: 369 gaccagtccgaccagagcttcctcgacgacgaccagatggaggcagggtgggtgctcac 427 |||||||| |||||||| || || || || |||||||| || || |||||||||||||| Sbjct: 320 gaccagtctgaccagagttttcttgatgatgaccagattgaagctgggtgggtgctcac 378
>emb|Y12734.1|PPFERREDO P.patens mRNA for ferredoxin Length = 888 Score = 46.1 bits (23), Expect = 0.100 Identities = 41/47 (87%) Strand = Plus / Plus Query: 300 gacctgccctactcctgccgcgccggctcctgctcctcctgcgccgg 346 |||||||| ||||||||||| ||||| | |||||||| |||||||| Sbjct: 398 gacctgccttactcctgccgtgccggagcttgctcctcttgcgccgg 444
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 46.1 bits (23), Expect = 0.100 Identities = 26/27 (96%) Strand = Plus / Plus Query: 292 agggcatcgacctgccctactcctgcc 318 ||||||||||| ||||||||||||||| Sbjct: 5368395 agggcatcgacgtgccctactcctgcc 5368421
>gb|U29516.1|CRU29516 Chlamydomonas reinhardtii ferredoxin precursor gene, complete cds Length = 989 Score = 46.1 bits (23), Expect = 0.100 Identities = 44/51 (86%) Strand = Plus / Plus Query: 300 gacctgccctactcctgccgcgccggctcctgctcctcctgcgccggcaag 350 |||||||||||||| |||||||| || | |||||| ||||||||||||| Sbjct: 605 gacctgccctactcttgccgcgctggtgcttgctccagctgcgccggcaag 655
>gb|AC158934.4| Mus musculus chromosome 3, clone RP23-218L17, complete sequence Length = 194631 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 41 tcttagctccagctagccacca 62 |||||||||||||||||||||| Sbjct: 12706 tcttagctccagctagccacca 12727
>ref|NM_015576.1| Homo sapiens CAZ-associated structural protein (CAST1), mRNA Length = 6138 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 319 gcgccggctcctgctcctcctg 340 |||||||||||||||||||||| Sbjct: 23 gcgccggctcctgctcctcctg 44
>gb|AE011784.1| Xanthomonas axonopodis pv. citri str. 306, section 162 of 469 of the complete genome Length = 13803 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 188 gctccgcgcgcaggcgacgtac 209 |||||||||||||||||||||| Sbjct: 385 gctccgcgcgcaggcgacgtac 364
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 44.1 bits (22), Expect = 0.39 Identities = 40/46 (86%) Strand = Plus / Minus Query: 303 ctgccctactcctgccgcgccggctcctgctcctcctgcgccggca 348 ||||||||||| ||||||||||| |||||| |||||||||||| Sbjct: 8467226 ctgccctactcgtgccgcgccggggattgctccacctgcgccggca 8467181 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 328 cctgctcctcctgcgccggc 347 |||||||||||||||||||| Sbjct: 20196436 cctgctcctcctgcgccggc 20196455
>gb|AF195208.1|AF195208 Pyrus pyrifolia strain Whangkeumbae ferredoxin (FD1) mRNA, complete cds Length = 363 Score = 44.1 bits (22), Expect = 0.39 Identities = 43/50 (86%) Strand = Plus / Plus Query: 300 gacctgccctactcctgccgcgccggctcctgctcctcctgcgccggcaa 349 |||||||||||||||||| | || || || ||||| || ||||||||||| Sbjct: 32 gacctgccctactcctgcagggcagggtcttgctcatcgtgcgccggcaa 81
>dbj|AP005178.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0056I06 Length = 138653 Score = 44.1 bits (22), Expect = 0.39 Identities = 40/46 (86%) Strand = Plus / Minus Query: 303 ctgccctactcctgccgcgccggctcctgctcctcctgcgccggca 348 ||||||||||| ||||||||||| |||||| |||||||||||| Sbjct: 98819 ctgccctactcgtgccgcgccggggattgctccacctgcgccggca 98774
>gb|AC102844.11| Mus musculus chromosome 3, clone RP24-389H4, complete sequence Length = 199088 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 41 tcttagctccagctagccacca 62 |||||||||||||||||||||| Sbjct: 122379 tcttagctccagctagccacca 122358
>emb|AL671878.8| Mouse DNA sequence from clone RP23-184D5 on chromosome 4, complete sequence Length = 230395 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 41 tcttagctccagctagccacca 62 |||||||||||||||||||||| Sbjct: 119664 tcttagctccagctagccacca 119643
>gb|AC098478.2| Homo sapiens chromosome 3 clone RP11-750K11, complete sequence Length = 217346 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 319 gcgccggctcctgctcctcctg 340 |||||||||||||||||||||| Sbjct: 72263 gcgccggctcctgctcctcctg 72242
>dbj|AB002376.2| Human mRNA for KIAA0378 gene, partial cds Length = 6137 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 319 gcgccggctcctgctcctcctg 340 |||||||||||||||||||||| Sbjct: 23 gcgccggctcctgctcctcctg 44
>gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, complete genome Length = 943016 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 225 acgcccgagggcgaggtggagctggaggt 253 |||||| |||||||||||| ||||||||| Sbjct: 652282 acgcccaagggcgaggtggcgctggaggt 652310
>emb|Z46944.1|CSNPHFDXN C.sinensis mRNA for non-photosynthetic ferredoxin Length = 690 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 298 tcgacctgccctactcctgccgcgc 322 ||||||||||||| ||||||||||| Sbjct: 339 tcgacctgccctattcctgccgcgc 363
>emb|BX572099.1| Prochlorococcus marinus MIT9313 complete genome; segment 5/7 Length = 349746 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 292 agggcatcgacctgccctactcctg 316 ||||||||||||||||||| ||||| Sbjct: 122828 agggcatcgacctgccctattcctg 122804 Score = 40.1 bits (20), Expect = 6.2 Identities = 29/32 (90%) Strand = Plus / Minus Query: 369 gaccagtccgaccagagcttcctcgacgacga 400 |||||||| || |||||||||||||| ||||| Sbjct: 122751 gaccagtctgatcagagcttcctcgatgacga 122720
>gb|AC010032.10| Drosophila melanogaster 3L BAC RP98-2N23 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 192399 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 320 cgccggctcctgctcctcctg 340 ||||||||||||||||||||| Sbjct: 157395 cgccggctcctgctcctcctg 157415
>gb|AC091127.3| Drosophila melanogaster 3L BAC RP98-27E18 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 177835 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 320 cgccggctcctgctcctcctg 340 ||||||||||||||||||||| Sbjct: 74904 cgccggctcctgctcctcctg 74924
>ref|NM_206228.1| Drosophila melanogaster trio CG18214-RF, transcript variant F (trio), mRNA Length = 2961 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 320 cgccggctcctgctcctcctg 340 ||||||||||||||||||||| Sbjct: 783 cgccggctcctgctcctcctg 763
>ref|NM_167849.1| Drosophila melanogaster trio CG18214-RB, transcript variant B (trio), mRNA Length = 4175 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 320 cgccggctcctgctcctcctg 340 ||||||||||||||||||||| Sbjct: 767 cgccggctcctgctcctcctg 747
>ref|NM_167848.1| Drosophila melanogaster trio CG18214-RD, transcript variant D (trio), mRNA Length = 4908 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 320 cgccggctcctgctcctcctg 340 ||||||||||||||||||||| Sbjct: 1500 cgccggctcctgctcctcctg 1480
>ref|NM_167847.1| Drosophila melanogaster trio CG18214-RC, transcript variant C (trio), mRNA Length = 9514 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 320 cgccggctcctgctcctcctg 340 ||||||||||||||||||||| Sbjct: 6106 cgccggctcctgctcctcctg 6086
>ref|NM_143703.2| Drosophila melanogaster trio CG18214-RA, transcript variant A (trio), mRNA Length = 9249 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 320 cgccggctcctgctcctcctg 340 ||||||||||||||||||||| Sbjct: 5841 cgccggctcctgctcctcctg 5821
>gb|AY070715.1| Drosophila melanogaster SD08659 full length cDNA Length = 2990 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 320 cgccggctcctgctcctcctg 340 ||||||||||||||||||||| Sbjct: 771 cgccggctcctgctcctcctg 751
>gb|AF206633.1|AF206633 Streptomyces peucetius chitinase C precursor, gene, complete cds; and unknown gene Length = 2699 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 225 acgcccgagggcgaggtggagctgg 249 |||||||||||||||| |||||||| Sbjct: 2527 acgcccgagggcgaggaggagctgg 2503
>gb|AE016820.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VII, complete sequence Length = 1476513 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 312 tcctgccgcgccggctcctgctcct 336 |||||||||||||||||| |||||| Sbjct: 1126892 tcctgccgcgccggctccggctcct 1126916
>gb|AF216663.1|AF216663 Drosophila melanogaster guanine-nucleotide-exchange-factor TRIO (Trio) mRNA, complete cds Length = 8033 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 320 cgccggctcctgctcctcctg 340 ||||||||||||||||||||| Sbjct: 5838 cgccggctcctgctcctcctg 5818
>gb|AC007374.6|AC007374 Homo sapiens chromosome 14 clone RP11-325L17 map 14q31, complete sequence Length = 190565 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 411 gcagggtgggtgctcacctgc 431 ||||||||||||||||||||| Sbjct: 203 gcagggtgggtgctcacctgc 183
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 85 gcgcgcccttctccgtgcgcg 105 ||||||||||||||||||||| Sbjct: 2982867 gcgcgcccttctccgtgcgcg 2982847
>gb|AF215635.1|AF215635 Drosophila melanogaster Rho family guanine nucleotide exchange factor Trio (Trio) mRNA, complete cds Length = 7967 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 320 cgccggctcctgctcctcctg 340 ||||||||||||||||||||| Sbjct: 5849 cgccggctcctgctcctcctg 5829
>dbj|AK119950.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-184-C04, full insert sequence Length = 2055 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 253 tccccgacgacgtctacatcc 273 ||||||||||||||||||||| Sbjct: 370 tccccgacgacgtctacatcc 390
>ref|NM_211926.1| Eremothecium gossypii AGR198Cp (AGR198C), mRNA Length = 1548 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 312 tcctgccgcgccggctcctgctcct 336 |||||||||||||||||| |||||| Sbjct: 554 tcctgccgcgccggctccggctcct 530
>emb|AL135818.3|CNS01DVH Human chromosome 14 DNA sequence BAC C-2547L24 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 203777 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 411 gcagggtgggtgctcacctgc 431 ||||||||||||||||||||| Sbjct: 33183 gcagggtgggtgctcacctgc 33203
>gb|AE003470.4| Drosophila melanogaster chromosome 3L, section 4 of 83 of the complete sequence Length = 318699 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 320 cgccggctcctgctcctcctg 340 ||||||||||||||||||||| Sbjct: 89551 cgccggctcctgctcctcctg 89571
>gb|BT001377.1| Drosophila melanogaster GH01987 full insert cDNA Length = 3071 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 320 cgccggctcctgctcctcctg 340 ||||||||||||||||||||| Sbjct: 75 cgccggctcctgctcctcctg 55
>emb|CT009609.1| Desulfococcus multivorans vrl island Length = 89210 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 277 accaggccgaggaggagggcatcga 301 |||| |||||||||||||||||||| Sbjct: 18501 accacgccgaggaggagggcatcga 18477
>dbj|AB035419.1| Drosophila melanogaster mRNA for Trio, complete cds Length = 9238 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 320 cgccggctcctgctcctcctg 340 ||||||||||||||||||||| Sbjct: 5838 cgccggctcctgctcctcctg 5818
>ref|XM_474484.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 999 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 312 tcctgccgcgccggctcctgctcc 335 |||||||| ||||||||||||||| Sbjct: 419 tcctgccgtgccggctcctgctcc 396
>gb|DQ214545.1| Taeniopygia guttata clone 0063P0007H08 RIKEN cDNA 2900070E19 variant 2-like mRNA, complete sequence Length = 1134 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 142 ccgcggccctcagcctcgccgccg 165 |||| ||||||||||||||||||| Sbjct: 160 ccgccgccctcagcctcgccgccg 137
>gb|DQ214544.1| Taeniopygia guttata clone 0065P0011C11 RIKEN cDNA 2900070E19 variant 2-like mRNA, complete sequence Length = 1146 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 142 ccgcggccctcagcctcgccgccg 165 |||| ||||||||||||||||||| Sbjct: 165 ccgccgccctcagcctcgccgccg 142
>ref|XM_478452.1| Oryza sativa (japonica cultivar-group), mRNA Length = 894 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 328 cctgctcctcctgcgccggc 347 |||||||||||||||||||| Sbjct: 173 cctgctcctcctgcgccggc 192
>gb|AC136219.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0073E05, complete sequence Length = 178013 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 ccctcagcctcgccgccgcc 167 |||||||||||||||||||| Sbjct: 158072 ccctcagcctcgccgccgcc 158053
>gb|AY028079.1| Homo sapiens putative protein and FSHD Region Gene 2 protein (HSA10-FRG2) genes, complete cds Length = 126625 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 gaccagatggaggcagggtg 418 |||||||||||||||||||| Sbjct: 10423 gaccagatggaggcagggtg 10442
>ref|XM_423873.1| PREDICTED: Gallus gallus similar to RIKEN cDNA 9030409G11 (LOC426211), mRNA Length = 1055 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 317 ccgcgccggctcctgctcctcctgcgcc 344 ||||||| |||||||||||| ||||||| Sbjct: 290 ccgcgccagctcctgctccttctgcgcc 263
>ref|XM_583646.2| PREDICTED: Bos taurus similar to Apolipoprotein B-100 precursor (Apo B-100) (LOC507092), partial mRNA Length = 2592 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 238 aggtggagctggaggtcccc 257 |||||||||||||||||||| Sbjct: 224 aggtggagctggaggtcccc 243
>ref|XM_959888.1| Neurospora crassa OR74A hypothetical protein (NCU03122.1) partial mRNA Length = 1398 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 275 ggaccaggccgaggaggagg 294 |||||||||||||||||||| Sbjct: 19 ggaccaggccgaggaggagg 38
>ref|XM_330557.1| Neurospora crassa OR74A hypothetical protein (NCU03122.1) partial mRNA Length = 1398 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 275 ggaccaggccgaggaggagg 294 |||||||||||||||||||| Sbjct: 19 ggaccaggccgaggaggagg 38
>gb|AC116877.18| Mus musculus chromosome 18, clone RP24-429E21, complete sequence Length = 188544 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 atcttagctccagctagcca 59 |||||||||||||||||||| Sbjct: 90375 atcttagctccagctagcca 90356
>ref|XM_657821.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN5309.2), mRNA Length = 642 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 232 agggcgaggtggagctggag 251 |||||||||||||||||||| Sbjct: 26 agggcgaggtggagctggag 7
>ref|XM_862579.1| PREDICTED: Canis familiaris hypothetical protein LOC610929 (LOC610929), mRNA Length = 996 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 325 gctcctgctcctcctgcgcc 344 |||||||||||||||||||| Sbjct: 649 gctcctgctcctcctgcgcc 630
>ref|NM_019287.1| Rattus norvegicus apolipoprotein B (Apob), mRNA Length = 14278 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 238 aggtggagctggaggtcccc 257 |||||||||||||||||||| Sbjct: 237 aggtggagctggaggtcccc 256
>emb|CR725680.2|CNS0GMVQ Tetraodon nigroviridis full-length cDNA Length = 1253 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 324 ggctcctgctcctcctgcgccggc 347 |||||||||||||||| ||||||| Sbjct: 55 ggctcctgctcctcctccgccggc 78
>emb|Z98882.4|HS356B8 Human DNA sequence from clone LA16c-356B8 on chromosome 16 Contains the 3' end of the RAB11FIP3 gene for RAB11 family interacting protein 3 (class II) and a CpG island, complete sequence Length = 36507 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 410 ggcagggtgggtgctcacct 429 |||||||||||||||||||| Sbjct: 24891 ggcagggtgggtgctcacct 24872
>gb|AY321317.1| Rattus norvegicus Ac1-060 mRNA, complete cds Length = 14278 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 238 aggtggagctggaggtcccc 257 |||||||||||||||||||| Sbjct: 237 aggtggagctggaggtcccc 256
>gb|AY318958.1| Rattus norvegicus Aa1064 mRNA, complete cds Length = 14278 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 238 aggtggagctggaggtcccc 257 |||||||||||||||||||| Sbjct: 237 aggtggagctggaggtcccc 256
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 235 gcgaggtggagctggaggtccccgacga 262 |||||||||||||||||| |||| |||| Sbjct: 3068908 gcgaggtggagctggaggacccctacga 3068881
>gb|AC095787.7| Rattus norvegicus 14 BAC CH230-9M3 (Children's Hospital Oakland Research Institute) complete sequence Length = 242500 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 207 tacaaggtgaagctggtgac 226 |||||||||||||||||||| Sbjct: 99909 tacaaggtgaagctggtgac 99890
>emb|BX842637.1| Neurospora crassa DNA linkage group I cosmid contig 5C2 Length = 98769 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 275 ggaccaggccgaggaggagg 294 |||||||||||||||||||| Sbjct: 98146 ggaccaggccgaggaggagg 98165
>emb|AL939129.1|SCO939129 Streptomyces coelicolor A3(2) complete genome; segment 26/29 Length = 292200 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 155 cctcgccgccgccaagcagg 174 |||||||||||||||||||| Sbjct: 220196 cctcgccgccgccaagcagg 220177
>emb|AL939117.1|SCO939117 Streptomyces coelicolor A3(2) complete genome; segment 14/29 Length = 309050 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 212 ggtgaagctggtgacgcccgagggcgag 239 |||| ||||| ||||||||||||||||| Sbjct: 279070 ggtgcagctgctgacgcccgagggcgag 279043
>emb|AL606656.3|OSJN00099 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0020J19, complete sequence Length = 123272 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 312 tcctgccgcgccggctcctgctcc 335 |||||||| ||||||||||||||| Sbjct: 104153 tcctgccgtgccggctcctgctcc 104130
>emb|AJ489783.1|TGO489783 Toxoplasma gondii partial mRNA for ferredoxin (fdx gene) Length = 836 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 294 ggcatcgacctgccctactcctgccgcg 321 |||||||| ||||| ||||||||||||| Sbjct: 381 ggcatcgagctgccgtactcctgccgcg 408
>gb|AE006463.1| Homo sapiens 16p13.3 sequence section 2 of 8 Length = 260418 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 410 ggcagggtgggtgctcacct 429 |||||||||||||||||||| Sbjct: 252502 ggcagggtgggtgctcacct 252483
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 294 ggcatcgacctgccctactcctgc 317 |||||||||||||||||| ||||| Sbjct: 750141 ggcatcgacctgccctacgcctgc 750118
>gb|AF486634.1| Triticum aestivum ferredoxin precursor, mRNA, complete cds Length = 800 Score = 40.1 bits (20), Expect = 6.2 Identities = 35/40 (87%) Strand = Plus / Plus Query: 311 ctcctgccgcgccggctcctgctcctcctgcgccggcaag 350 ||||||||||||||| || |||||| | ||||| |||||| Sbjct: 411 ctcctgccgcgccggatcgtgctccacatgcgcgggcaag 450
>gb|AC012236.12| Homo sapiens chromosome 15, clone RP11-16E12, complete sequence Length = 173729 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 gccgccgccaagcaggtgcg 178 |||||||||||||||||||| Sbjct: 18283 gccgccgccaagcaggtgcg 18302
>gb|AC025296.10| Oryza sativa chromosome 10 BAC OSJNBa0076F20 genomic sequence, complete sequence Length = 165394 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 277 accaggccgaggaggagggc 296 |||||||||||||||||||| Sbjct: 85407 accaggccgaggaggagggc 85426
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 223 tgacgcccgagggcgaggtg 242 |||||||||||||||||||| Sbjct: 4372847 tgacgcccgagggcgaggtg 4372828
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 277 accaggccgaggaggagggc 296 |||||||||||||||||||| Sbjct: 19457541 accaggccgaggaggagggc 19457560
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 ccctcagcctcgccgccgcc 167 |||||||||||||||||||| Sbjct: 18684957 ccctcagcctcgccgccgcc 18684938
>gb|AC017028.11| Homo sapiens BAC clone RP11-275G7 from 2, complete sequence Length = 201971 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 321 gccggctcctgctcctcctg 340 |||||||||||||||||||| Sbjct: 96667 gccggctcctgctcctcctg 96686
>gb|AF260753.1|AF260753 Cricetulus griseus plectin mRNA, partial cds Length = 14618 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 314 ctgccgcgccggctcctgctcctcctgc 341 ||||||||||| |||||||||| ||||| Sbjct: 5694 ctgccgcgccgcctcctgctccgcctgc 5667
>dbj|AP003827.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1372_D12 Length = 179898 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 328 cctgctcctcctgcgccggc 347 |||||||||||||||||||| Sbjct: 98824 cctgctcctcctgcgccggc 98843
>dbj|AK105982.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-G02, full insert sequence Length = 1113 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 312 tcctgccgcgccggctcctgctcc 335 |||||||| ||||||||||||||| Sbjct: 301 tcctgccgtgccggctcctgctcc 278
>dbj|AK105888.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-E04, full insert sequence Length = 1058 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 312 tcctgccgcgccggctcctgctcc 335 |||||||| ||||||||||||||| Sbjct: 236 tcctgccgtgccggctcctgctcc 213
>emb|AJ327902.1|HSA327902 Homo sapiens genomic sequence surrounding NotI site, clone NL4-DK13C Length = 664 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 gccgccgccaagcaggtgcg 178 |||||||||||||||||||| Sbjct: 4 gccgccgccaagcaggtgcg 23
>dbj|AK070001.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023034E19, full insert sequence Length = 950 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 312 tcctgccgcgccggctcctgctcc 335 |||||||| ||||||||||||||| Sbjct: 237 tcctgccgtgccggctcctgctcc 214
>gb|BC018174.1| Mus musculus BTB (POZ) domain containing 3, mRNA (cDNA clone MGC:25591 IMAGE:4011475), complete cds Length = 2436 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 39 catcttagctccagctagcc 58 |||||||||||||||||||| Sbjct: 304 catcttagctccagctagcc 323
>gb|AE000666.1| Methanothermobacter thermautotrophicus str. Delta H, complete genome Length = 1751377 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 142 ccgcggccctcagcctcgcc 161 |||||||||||||||||||| Sbjct: 887836 ccgcggccctcagcctcgcc 887817
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 277 accaggccgaggaggagggc 296 |||||||||||||||||||| Sbjct: 19468817 accaggccgaggaggagggc 19468836
>emb|AL161645.14| Human DNA sequence from clone RP11-108K14 on chromosome 10 Contains the 3' end of a novel gene (LOC92170) (FLJ90495, FLJ39553), three novel genes, the CYP2E1 gene for family 2 subfamily E polypeptide 1 cytochrome P450, a novel gene (LOC93426), the 3' end of a olfactory receptor protein pseudogene and eight CpG islands, complete sequence Length = 161644 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 gaccagatggaggcagggtg 418 |||||||||||||||||||| Sbjct: 143171 gaccagatggaggcagggtg 143190
>dbj|AB209700.1| Homo sapiens mRNA for cytochrome P450, family 2, subfamily E, polypeptide 1 variant protein Length = 7917 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 gaccagatggaggcagggtg 418 |||||||||||||||||||| Sbjct: 5229 gaccagatggaggcagggtg 5248 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,538,576 Number of Sequences: 3902068 Number of extensions: 3538576 Number of successful extensions: 101331 Number of sequences better than 10.0: 136 Number of HSP's better than 10.0 without gapping: 136 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 99305 Number of HSP's gapped (non-prelim): 1999 length of query: 457 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 435 effective length of database: 17,147,199,772 effective search space: 7459031900820 effective search space used: 7459031900820 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
