>MAN1_MOUSE (Q9WU40) Inner nuclear membrane protein Man1 (LEM domain containing|
           protein 3) (Fragment)
          Length = 331

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 23/67 (34%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
 Frame = -3

Query: 433 RAPVVRQNAPLSPAG*GPYKRGPARW*GVRRPS---RLPPPAESDGAAASGEYGVEAATT 263
           RAP     A     G    +R P  W G RRP+     PP A SDGAA   +  +     
Sbjct: 171 RAPPAPPAAGEVTGGHPGERRKPHSWWGARRPAGPEPQPPAAGSDGAAEDADEELADGED 230

Query: 262 RDGRDEK 242
           RD   E+
Sbjct: 231 RDPEAEE 237

>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1|
           (Ser/Arg-related nuclear matrix protein) (SR-related
           nuclear matrix protein of 160 kDa) (SRm160)
          Length = 904

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 19/46 (41%), Positives = 21/46 (45%)
 Frame = +2

Query: 251 SPVSRRRRLHAVLSGSRRAVGLRRWGEPTRPPNSLPSCWPSLVRPL 388
           SPV RRRR  A LSGS  +    R   P + P    S  P   R L
Sbjct: 343 SPVRRRRRSSASLSGSSSSSSSSRSRSPPKKPPKRTSSPPRKTRRL 388

>IF2_MYCLE (Q9Z5I9) Translation initiation factor IF-2|
          Length = 924

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = +2

Query: 338 RPPNSLPSCWPSLVRPLPGGREGG 409
           RPP   PS  PS + P PGG  GG
Sbjct: 194 RPPAPRPSASPSSMSPRPGGAVGG 217

>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1|
          Length = 917

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 19/46 (41%), Positives = 21/46 (45%)
 Frame = +2

Query: 251 SPVSRRRRLHAVLSGSRRAVGLRRWGEPTRPPNSLPSCWPSLVRPL 388
           SPV RRRR  A LSGS  +    R   P + P    S  P   R L
Sbjct: 343 SPVRRRRRSSASLSGSSSSSSSSRSRSPPKKPPKRTSSPPRKTRRL 388

>CO3A1_MOUSE (P08121) Collagen alpha-1(III) chain precursor|
          Length = 1464

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
 Frame = -3

Query: 376 KRGPARW*GVRRPSRLP----PPAESDGAAASGEYGVEAATTRDG 254
           +RGP+ + G   P+ +P    PP E  G   +G  GV     RDG
Sbjct: 483 ERGPSGFRGPAGPNGIPGEKGPPGERGGPGPAGPRGVAGEPGRDG 527

>LIPA3_MOUSE (P60469) Liprin-alpha-3 (Protein tyrosine phosphatase receptor type|
           f polypeptide-interacting protein alpha-3)
           (PTPRF-interacting protein alpha-3)
          Length = 1043

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 17/72 (23%)
 Frame = -3

Query: 439 HARAPVVRQNAPLSPAG*GPYKRGP-ARW*GVRRPS-----------RLPP--PAESDGA 302
           +++AP +   APL P G G  + G   RW G +  S            +PP  P E DG+
Sbjct: 367 YSQAPTLPSGAPLDPYGAGSGRAGKRGRWSGAKDESSKDWDRSAPAGSIPPPFPGELDGS 426

Query: 301 ---AASGEYGVE 275
               A G +G E
Sbjct: 427 DEEEAEGMFGAE 438

>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1|
          Length = 888

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 20/47 (42%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +2

Query: 251 SPVSRRRRLHAVLSG-SRRAVGLRRWGEPTRPPNSLPSCWPSLVRPL 388
           SPV RRRR  A LSG S  +   R    P +PP    S  P   R L
Sbjct: 339 SPVRRRRRSSASLSGSSSSSSSSRSRSPPKKPPKRTVSSPPRKTRRL 385

>PYGO2_HUMAN (Q9BRQ0) Pygopus homolog 2|
          Length = 406

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 326 GEPTRPPNSLPSCWPSLVRPLPGGREGG 409
           G P+ PPN+ P   P    P PGG +GG
Sbjct: 233 GLPSLPPNTSPFPGPDPGFPGPGGEDGG 260

>CCDC8_RAT (P62521) Probable Coiled-coil domain-containing protein 8|
          Length = 643

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -3

Query: 328 PPPAESDGAAASGEYGVEAATTR 260
           P  AE+ GA A+ E+GVEAA ++
Sbjct: 292 PEAAENQGAGAAAEHGVEAAASQ 314

>CO5A1_HUMAN (P20908) Collagen alpha-1(V) chain precursor|
          Length = 1838

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 21/55 (38%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
 Frame = -3

Query: 406  PLSPAG*GPYKRGPARW*GV----RRPSRLPPPAESDGAAASGEYGVEAATTRDG 254
            P  PAG  P +RGPA   G      RP    PP  +    A GE G +    RDG
Sbjct: 1082 PPGPAG-SPGERGPAGAAGPIGIPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDG 1135


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,028,677
Number of Sequences: 219361
Number of extensions: 536729
Number of successful extensions: 1857
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1856
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2628831825
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)