ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast55a10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_471605.1| Oryza sativa (japonica cultivar-group), predic... 56 9e-05
2dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 56 9e-05
3emb|AL731633.2|OSJN00280 Oryza sativa genomic DNA, chromosome 4,... 56 9e-05
4gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome 44 0.33
5dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.33
6dbj|AP004663.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.33
7ref|XM_483684.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.3
8ref|NM_188847.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.3
9ref|NM_006317.3| Homo sapiens brain abundant, membrane attached ... 42 1.3
10gb|AC090441.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.3
11gb|BC000518.2| Homo sapiens brain abundant, membrane attached si... 42 1.3
12gb|AC110234.11| Mus musculus chromosome 5, clone RP23-76J15, com... 42 1.3
13emb|AL392106.4| Human DNA sequence from clone RP11-563H8 on chro... 42 1.3
14ref|XM_965135.1| PREDICTED: Tribolium castaneum similar to CG335... 42 1.3
15ref|XM_965159.1| PREDICTED: Tribolium castaneum similar to CG335... 42 1.3
16emb|BX640451.1| Bordetella bronchiseptica strain RB50, complete ... 42 1.3
17emb|BX640435.1| Bordetella parapertussis strain 12822, complete ... 42 1.3
18emb|AL939128.1|SCO939128 Streptomyces coelicolor A3(2) complete ... 42 1.3
19emb|CR613035.1| full-length cDNA clone CS0DF038YB19 of Fetal bra... 42 1.3
20emb|CR609916.1| full-length cDNA clone CS0DC001YO12 of Neuroblas... 42 1.3
21gb|AC091878.2| Homo sapiens chromosome 5 clone CTD-3065A13, comp... 42 1.3
22dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
23dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
24dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
25gb|AF109216.1|AF109216 Mus musculus tumor necrosis factor recept... 42 1.3
26dbj|AP005251.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
27dbj|AP005968.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
28dbj|AP003765.5| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
29gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete... 42 1.3
30gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.3
31emb|AL627204.7| Mouse DNA sequence from clone RP23-118E21 on chr... 42 1.3
32ref|XM_550300.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.2
33ref|NM_191592.2| Oryza sativa (japonica cultivar-group), mRNA 40 5.2
34ref|XM_467442.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.2
35ref|XM_450791.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.2
36ref|XM_450747.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.2
37ref|NM_176933.3| Mus musculus dual specificity phosphatase 4 (Du... 40 5.2
38gb|AC122458.3| Mus musculus BAC clone RP24-270D10 from chromosom... 40 5.2
39ref|NM_182572.2| Homo sapiens zinc finger and SCAN domain contai... 40 5.2
40emb|AL591793.1|SME591793 Sinorhizobium meliloti 1021 complete ch... 40 5.2
41gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, compl... 40 5.2
42emb|AL356095.11| Human DNA sequence from clone RP11-369J21 on ch... 40 5.2
43emb|BX842630.1| Neurospora crassa DNA linkage group I BAC contig... 40 5.2
44emb|BX572598.1| Rhodopseudomonas palustris CGA009 complete genom... 40 5.2
45emb|AL939110.1|SCO939110 Streptomyces coelicolor A3(2) complete ... 40 5.2
46emb|AJ488163.1|CCA488163 Cebus capucinus TWIST gene for twist tr... 40 5.2
47emb|AJ488162.1|MTO488162 Macaca tonkeana TWIST gene for twist tr... 40 5.2
48emb|AJ488161.1|CDI488161 Cercopithecus diana TWIST gene for twis... 40 5.2
49emb|AJ488160.1|HCO488160 Hylobates concolor TWIST gene for twist... 40 5.2
50dbj|AK091098.1| Homo sapiens cDNA FLJ33779 fis, clone BRSSN20066... 40 5.2
51dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 40 5.2
52gb|AC069300.7| Oryza sativa chromosome 10 BAC OSJNBa0010C11 geno... 40 5.2
53dbj|AK165991.1| Mus musculus lung RCB-0558 LLC cDNA, RIKEN full-... 40 5.2
54dbj|AK080964.1| Mus musculus 4 days neonate male adipose cDNA, R... 40 5.2
55dbj|AK053746.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN f... 40 5.2
56dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
57dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
58dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
59dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
60dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 5.2
61dbj|AP003983.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
62dbj|AP005679.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
63dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 5.2
64dbj|AP003215.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
65dbj|AP004840.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
66dbj|AP004165.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
67dbj|AP005838.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
68dbj|AP005702.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
69dbj|AP005637.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
70emb|AJ488165.1|CJA488165 Callithrix jacchus TWIST gene for twist... 40 5.2
71gb|AC006450.13|AC006450 Homo sapiens chromosome 9, clone RP11-85... 40 5.2
72dbj|AK110418.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.2
73dbj|AK101660.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.2
74dbj|AK073313.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.2
75gb|AC154860.2| Mus musculus BAC clone RP23-9N20 from 13, complet... 40 5.2
76gb|AC154321.2| Mus musculus BAC clone RP23-316B9 from 13, comple... 40 5.2
77dbj|AK062282.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.2
78emb|AL442108.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 40 5.2
79gb|AF114162.1|AF114162 Lolium temulentum gibberellin MYB transcr... 40 5.2
80dbj|AP003086.2| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 5.2
81dbj|AP001885.4| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 5.2
82gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 40 5.2
83gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.2
84emb|AL731882.2|CNS08C8M Oryza sativa chromosome 12, . BAC OSJNBb... 40 5.2
85emb|AL732376.2|CNS08C8Z Oryza sativa chromosome 12, . BAC OSJNBa... 40 5.2 
>ref|XM_471605.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 579

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 43/48 (89%)
 Strand = Plus / Plus

                                                           
Query: 342 cgcgccgactgcgcgccactgcgctcgtcgctgttctacttcggcgag 389
           |||| |||||||||||| | ||||||| |||||||| |||||||||||
Sbjct: 250 cgcggcgactgcgcgccgcggcgctcgccgctgttcaacttcggcgag 297
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 43/48 (89%)
 Strand = Plus / Plus

                                                                
Query: 342      cgcgccgactgcgcgccactgcgctcgtcgctgttctacttcggcgag 389
                |||| |||||||||||| | ||||||| |||||||| |||||||||||
Sbjct: 12638492 cgcggcgactgcgcgccgcggcgctcgccgctgttcaacttcggcgag 12638539
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>emb|AL731633.2|OSJN00280 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0096E05,
             complete sequence
          Length = 129908

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 43/48 (89%)
 Strand = Plus / Plus

                                                             
Query: 342   cgcgccgactgcgcgccactgcgctcgtcgctgttctacttcggcgag 389
             |||| |||||||||||| | ||||||| |||||||| |||||||||||
Sbjct: 53478 cgcggcgactgcgcgccgcggcgctcgccgctgttcaacttcggcgag 53525
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>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 153     acgcccgccagcgacaccgacg 174
               ||||||||||||||||||||||
Sbjct: 2325320 acgcccgccagcgacaccgacg 2325341
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 166      acaccgacgacggcggcggcagcgcg 191
                ||||||||| ||||||||||||||||
Sbjct: 17039813 acaccgacggcggcggcggcagcgcg 17039838



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 170      cgacgacggcggcggcagcgc 190
                |||||||||||||||||||||
Sbjct: 27627955 cgacgacggcggcggcagcgc 27627935
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>dbj|AP004663.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0410E02
          Length = 144294

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 166   acaccgacgacggcggcggcagcgcg 191
             ||||||||| ||||||||||||||||
Sbjct: 75330 acaccgacggcggcggcggcagcgcg 75355
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>ref|XM_483684.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2814

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 170 cgacgacggcggcggcagcgc 190
           |||||||||||||||||||||
Sbjct: 561 cgacgacggcggcggcagcgc 541
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>ref|NM_188847.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 624

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 170 cgacgacggcggcggcagcgc 190
           |||||||||||||||||||||
Sbjct: 330 cgacgacggcggcggcagcgc 310
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>ref|NM_006317.3| Homo sapiens brain abundant, membrane attached signal protein 1
           (BASP1), mRNA
          Length = 1820

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 170 cgacgacggcggcggcagcgc 190
           |||||||||||||||||||||
Sbjct: 5   cgacgacggcggcggcagcgc 25
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>gb|AC090441.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNBb0052C09, complete sequence
          Length = 139468

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 166   acaccgacgacggcggcggcagcgc 190
             ||||||||| |||||||||||||||
Sbjct: 38959 acaccgacggcggcggcggcagcgc 38935
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>gb|BC000518.2| Homo sapiens brain abundant, membrane attached signal protein 1,
           mRNA (cDNA clone MGC:8555 IMAGE:2822874), complete cds
          Length = 1612

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 170 cgacgacggcggcggcagcgc 190
           |||||||||||||||||||||
Sbjct: 4   cgacgacggcggcggcagcgc 24
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>gb|AC110234.11| Mus musculus chromosome 5, clone RP23-76J15, complete sequence
          Length = 235276

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 80     aaggatggccattcacatgtgctactgct 108
              ||||| ||||||||||||| |||||||||
Sbjct: 104411 aaggaaggccattcacatgagctactgct 104383
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>emb|AL392106.4| Human DNA sequence from clone RP11-563H8 on chromosome 9 Contains a
             novel gene (FLJ20808) and a ribosomal protein L23a
             (RPL23A) pseudogene, complete sequence
          Length = 150771

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 89    cattcacatgtgctactgcta 109
             |||||||||||||||||||||
Sbjct: 39539 cattcacatgtgctactgcta 39519
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>ref|XM_965135.1| PREDICTED: Tribolium castaneum similar to CG33556-PA (LOC658775),
           mRNA
          Length = 4023

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 176 cggcggcggcagcgcgggcgt 196
           |||||||||||||||||||||
Sbjct: 807 cggcggcggcagcgcgggcgt 787
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>ref|XM_965159.1| PREDICTED: Tribolium castaneum similar to CG33556-PA (LOC658801),
           mRNA
          Length = 3954

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 176 cggcggcggcagcgcgggcgt 196
           |||||||||||||||||||||
Sbjct: 849 cggcggcggcagcgcgggcgt 829
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>emb|BX640451.1| Bordetella bronchiseptica strain RB50, complete genome; segment 15/16
          Length = 343473

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 169   ccgacgacggcggcggcagcg 189
             |||||||||||||||||||||
Sbjct: 80721 ccgacgacggcggcggcagcg 80701
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>emb|BX640435.1| Bordetella parapertussis strain 12822, complete genome; segment 13/14
          Length = 346259

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 169    ccgacgacggcggcggcagcg 189
              |||||||||||||||||||||
Sbjct: 345369 ccgacgacggcggcggcagcg 345349
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>emb|AL939128.1|SCO939128 Streptomyces coelicolor A3(2) complete genome; segment 25/29
          Length = 296500

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 177    ggcggcggcagcgcgggcgtc 197
              |||||||||||||||||||||
Sbjct: 146631 ggcggcggcagcgcgggcgtc 146651
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>emb|CR613035.1| full-length cDNA clone CS0DF038YB19 of Fetal brain of Homo sapiens
           (human)
          Length = 1580

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 170 cgacgacggcggcggcagcgc 190
           |||||||||||||||||||||
Sbjct: 20  cgacgacggcggcggcagcgc 40
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>emb|CR609916.1| full-length cDNA clone CS0DC001YO12 of Neuroblastoma Cot
           25-normalized of Homo sapiens (human)
          Length = 1553

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 170 cgacgacggcggcggcagcgc 190
           |||||||||||||||||||||
Sbjct: 19  cgacgacggcggcggcagcgc 39
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>gb|AC091878.2| Homo sapiens chromosome 5 clone CTD-3065A13, complete sequence
          Length = 132444

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 170    cgacgacggcggcggcagcgc 190
              |||||||||||||||||||||
Sbjct: 105743 cgacgacggcggcggcagcgc 105763
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 166     acaccgacgacggcggcggcagcgc 190
               ||||||||| |||||||||||||||
Sbjct: 9686434 acaccgacggcggcggcggcagcgc 9686410



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 170      cgacgacggcggcggcagcg 189
                ||||||||||||||||||||
Sbjct: 21388270 cgacgacggcggcggcagcg 21388251
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 170      cgacgacggcggcggcagcgc 190
                |||||||||||||||||||||
Sbjct: 26752013 cgacgacggcggcggcagcgc 26751993
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 165      gacaccgacgacggcggcggc 185
                |||||||||||||||||||||
Sbjct: 12027262 gacaccgacgacggcggcggc 12027242
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>gb|AF109216.1|AF109216 Mus musculus tumor necrosis factor receptor superfamily member 18
            (Tnfrsf18) gene, complete cds
          Length = 3803

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 80   aaggatggccattcacatgtgctactgct 108
            ||||||| |||||||||||||| ||||||
Sbjct: 1046 aaggatgcccattcacatgtgccactgct 1018
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>dbj|AP005251.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBb0011H15
          Length = 130146

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 170   cgacgacggcggcggcagcgc 190
             |||||||||||||||||||||
Sbjct: 25299 cgacgacggcggcggcagcgc 25279
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>dbj|AP005968.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:B1156C07
          Length = 182153

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 165   gacaccgacgacggcggcggc 185
             |||||||||||||||||||||
Sbjct: 76125 gacaccgacgacggcggcggc 76105
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>dbj|AP003765.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1003_C06
          Length = 143168

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 170   cgacgacggcggcggcagcgc 190
             |||||||||||||||||||||
Sbjct: 98870 cgacgacggcggcggcagcgc 98850
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>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome
          Length = 4941439

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 206     tcgccgcgcgcgcgccaatgc 226
               |||||||||||||||||||||
Sbjct: 3263277 tcgccgcgcgcgcgccaatgc 3263297
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 166     acaccgacgacggcggcggcagcgc 190
               ||||||||| |||||||||||||||
Sbjct: 9692473 acaccgacggcggcggcggcagcgc 9692449



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 170      cgacgacggcggcggcagcg 189
                ||||||||||||||||||||
Sbjct: 21399533 cgacgacggcggcggcagcg 21399514
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>emb|AL627204.7| Mouse DNA sequence from clone RP23-118E21 on chromosome 4, complete
              sequence
          Length = 142447

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 80     aaggatggccattcacatgtgctactgct 108
              ||||||| |||||||||||||| ||||||
Sbjct: 101767 aaggatgcccattcacatgtgccactgct 101739
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>ref|XM_550300.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1389

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 170 cgacgacggcggcggcagcg 189
           ||||||||||||||||||||
Sbjct: 578 cgacgacggcggcggcagcg 559
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>ref|NM_191592.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1677

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 170 cgacgacggcggcggcagcg 189
           ||||||||||||||||||||
Sbjct: 868 cgacgacggcggcggcagcg 849
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>ref|XM_467442.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 378

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 170 cgacgacggcggcggcagcg 189
           ||||||||||||||||||||
Sbjct: 283 cgacgacggcggcggcagcg 264
to top
>ref|XM_450791.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1518

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 176 cggcggcggcagcgcgggcg 195
           ||||||||||||||||||||
Sbjct: 810 cggcggcggcagcgcgggcg 829
to top
>ref|XM_450747.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1992

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 169  ccgacgacggcggcggcagcgcgg 192
            ||||||||||||||||| ||||||
Sbjct: 1642 ccgacgacggcggcggcggcgcgg 1619
to top
>ref|NM_176933.3| Mus musculus dual specificity phosphatase 4 (Dusp4), mRNA
          Length = 2428

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 176 cggcggcggcagcgcgggcg 195
           ||||||||||||||||||||
Sbjct: 194 cggcggcggcagcgcgggcg 213
to top
>gb|AC122458.3| Mus musculus BAC clone RP24-270D10 from chromosome 8, complete sequence
          Length = 185268

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 176   cggcggcggcagcgcgggcg 195
             ||||||||||||||||||||
Sbjct: 80173 cggcggcggcagcgcgggcg 80192
to top
>ref|NM_182572.2| Homo sapiens zinc finger and SCAN domain containing 1 (ZSCAN1), mRNA
          Length = 2052

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 77   cccaaggatggccattcacatgtg 100
            ||||||| ||||||||||||||||
Sbjct: 1489 cccaaggctggccattcacatgtg 1466
to top
>emb|AL591793.1|SME591793 Sinorhizobium meliloti 1021 complete chromosome; segment 12/12
          Length = 273785

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 212    cgcgcgcgccaatgccaccg 231
              ||||||||||||||||||||
Sbjct: 265025 cgcgcgcgccaatgccaccg 265044
to top
>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence
          Length = 3363523

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 157     ccgccagcgacaccgacgacggcg 180
               |||||||||||| |||||||||||
Sbjct: 1988886 ccgccagcgacaacgacgacggcg 1988909
to top
>emb|AL356095.11| Human DNA sequence from clone RP11-369J21 on chromosome 10 Contains a
              pseudogene similar to part of homeobox proteins, three
              nuclear DNA binding protein (C1D) pseudogenes, three novel
              genes, a ribosomal protein L22 (RPL22) pseudogene, the 3'
              end of the ANXA11 gene for annexin A11 and two CpG islands,
              complete sequence
          Length = 172079

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 348    gactgcgcgccactgcgctc 367
              ||||||||||||||||||||
Sbjct: 127651 gactgcgcgccactgcgctc 127632
to top
>emb|BX842630.1| Neurospora crassa DNA linkage group I BAC contig B13D15
          Length = 127789

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 20     tctcaatctcaaatctcaat 39
              ||||||||||||||||||||
Sbjct: 101702 tctcaatctcaaatctcaat 101721
to top
>emb|BX572598.1| Rhodopseudomonas palustris CGA009 complete genome; segment 6/16
          Length = 346879

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 169   ccgacgacggcggcggcagc 188
             ||||||||||||||||||||
Sbjct: 17019 ccgacgacggcggcggcagc 17000
to top
>emb|AL939110.1|SCO939110 Streptomyces coelicolor A3(2) complete genome; segment 7/29
          Length = 283100

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 168    accgacgacggcggcggcagcgcg 191
              |||||||||| |||||||||||||
Sbjct: 164687 accgacgacgtcggcggcagcgcg 164664
to top
>emb|AJ488163.1|CCA488163 Cebus capucinus TWIST gene for twist transcription factor
          Length = 624

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 176 cggcggcggcagcgcgggcg 195
           ||||||||||||||||||||
Sbjct: 246 cggcggcggcagcgcgggcg 265
to top
>emb|AJ488162.1|MTO488162 Macaca tonkeana TWIST gene for twist transcription factor
          Length = 606

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 176 cggcggcggcagcgcgggcg 195
           ||||||||||||||||||||
Sbjct: 246 cggcggcggcagcgcgggcg 265
to top
>emb|AJ488161.1|CDI488161 Cercopithecus diana TWIST gene for twist transcription factor
          Length = 606

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 176 cggcggcggcagcgcgggcg 195
           ||||||||||||||||||||
Sbjct: 246 cggcggcggcagcgcgggcg 265
to top
>emb|AJ488160.1|HCO488160 Hylobates concolor TWIST gene for twist transcription factor
          Length = 615

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 176 cggcggcggcagcgcgggcg 195
           ||||||||||||||||||||
Sbjct: 246 cggcggcggcagcgcgggcg 265
to top
>dbj|AK091098.1| Homo sapiens cDNA FLJ33779 fis, clone BRSSN2006644, weakly similar to
            ZINC FINGER PROTEIN 202
          Length = 2052

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 77   cccaaggatggccattcacatgtg 100
            ||||||| ||||||||||||||||
Sbjct: 1489 cccaaggctggccattcacatgtg 1466
to top
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 328     acgcccgctcccgccgcgcc 347
               ||||||||||||||||||||
Sbjct: 3878728 acgcccgctcccgccgcgcc 3878709
to top
>gb|AC069300.7| Oryza sativa chromosome 10 BAC OSJNBa0010C11 genomic sequence, complete
             sequence
          Length = 147117

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 170   cgacgacggcggcggcagcg 189
             ||||||||||||||||||||
Sbjct: 63283 cgacgacggcggcggcagcg 63264
to top
>dbj|AK165991.1| Mus musculus lung RCB-0558 LLC cDNA, RIKEN full-length enriched
           library, clone:G730027H02 product:dual specificity
           phosphatase 4, full insert sequence
          Length = 2744

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 176 cggcggcggcagcgcgggcg 195
           ||||||||||||||||||||
Sbjct: 508 cggcggcggcagcgcgggcg 527
to top
>dbj|AK080964.1| Mus musculus 4 days neonate male adipose cDNA, RIKEN full-length
           enriched library, clone:B430220P13 product:dual
           specificity phosphatase 4, full insert sequence
          Length = 2428

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 176 cggcggcggcagcgcgggcg 195
           ||||||||||||||||||||
Sbjct: 194 cggcggcggcagcgcgggcg 213
to top
>dbj|AK053746.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched
           library, clone:E130306H24 product:dual specificity
           phosphatase 4, full insert sequence
          Length = 1699

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 176 cggcggcggcagcgcgggcg 195
           ||||||||||||||||||||
Sbjct: 191 cggcggcggcagcgcgggcg 210
to top
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 167     caccgacgacggcggcggca 186
               ||||||||||||||||||||
Sbjct: 3984720 caccgacgacggcggcggca 3984701
to top
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 169      ccgacgacggcggcggcagc 188
                ||||||||||||||||||||
Sbjct: 21415793 ccgacgacggcggcggcagc 21415812



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 176      cggcggcggcagcgcgggcg 195
                ||||||||||||||||||||
Sbjct: 12778419 cggcggcggcagcgcgggcg 12778438



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 169      ccgacgacggcggcggcagcgcgg 192
                ||||||||||||||||| ||||||
Sbjct: 12575553 ccgacgacggcggcggcggcgcgg 12575530
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 170      cgacgacggcggcggcagcg 189
                ||||||||||||||||||||
Sbjct: 29547372 cgacgacggcggcggcagcg 29547353



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 170     cgacgacggcggcggcagcg 189
               ||||||||||||||||||||
Sbjct: 4425252 cgacgacggcggcggcagcg 4425233
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 170     cgacgacggcggcggcagcg 189
               ||||||||||||||||||||
Sbjct: 3835232 cgacgacggcggcggcagcg 3835251
to top
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 169     ccgacgacggcggcggcagc 188
               ||||||||||||||||||||
Sbjct: 2703574 ccgacgacggcggcggcagc 2703593
to top
>dbj|AP003983.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1038_A06
          Length = 147836

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 170    cgacgacggcggcggcagcg 189
              ||||||||||||||||||||
Sbjct: 142402 cgacgacggcggcggcagcg 142383
to top
>dbj|AP005679.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1210_A07
          Length = 131394

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 169   ccgacgacggcggcggcagc 188
             ||||||||||||||||||||
Sbjct: 32898 ccgacgacggcggcggcagc 32917
to top
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 167     caccgacgacggcggcggca 186
               ||||||||||||||||||||
Sbjct: 8407493 caccgacgacggcggcggca 8407474
to top
>dbj|AP003215.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBa0089K24
          Length = 154137

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 170    cgacgacggcggcggcagcg 189
              ||||||||||||||||||||
Sbjct: 108774 cgacgacggcggcggcagcg 108793
to top
>dbj|AP004840.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0544B02
          Length = 156339

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 170    cgacgacggcggcggcagcg 189
              ||||||||||||||||||||
Sbjct: 108816 cgacgacggcggcggcagcg 108797
to top
>dbj|AP004165.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OJ1479_B12
          Length = 127089

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 170  cgacgacggcggcggcagcg 189
            ||||||||||||||||||||
Sbjct: 5093 cgacgacggcggcggcagcg 5074
to top
>dbj|AP005838.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBa0041C07
          Length = 179047

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 169   ccgacgacggcggcggcagcgcgg 192
             ||||||||||||||||| ||||||
Sbjct: 41491 ccgacgacggcggcggcggcgcgg 41468
to top
>dbj|AP005702.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0027G10
          Length = 184759

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 176   cggcggcggcagcgcgggcg 195
             ||||||||||||||||||||
Sbjct: 86196 cggcggcggcagcgcgggcg 86215
to top
>dbj|AP005637.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0711A01
          Length = 162400

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 169   ccgacgacggcggcggcagcgcgg 192
             ||||||||||||||||| ||||||
Sbjct: 90880 ccgacgacggcggcggcggcgcgg 90857
to top
>emb|AJ488165.1|CJA488165 Callithrix jacchus TWIST gene for twist transcription factor
          Length = 612

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 176 cggcggcggcagcgcgggcg 195
           ||||||||||||||||||||
Sbjct: 249 cggcggcggcagcgcgggcg 268
to top
>gb|AC006450.13|AC006450 Homo sapiens chromosome 9, clone RP11-85O21, complete sequence
          Length = 177555

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 176    cggcggcggcagcgcgggcg 195
              ||||||||||||||||||||
Sbjct: 102578 cggcggcggcagcgcgggcg 102597
to top
>dbj|AK110418.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-165-H08, full
            insert sequence
          Length = 2172

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 170  cgacgacggcggcggcagcg 189
            ||||||||||||||||||||
Sbjct: 1366 cgacgacggcggcggcagcg 1385
to top
>dbj|AK101660.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033057J01, full
           insert sequence
          Length = 1975

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 170 cgacgacggcggcggcagcg 189
           ||||||||||||||||||||
Sbjct: 872 cgacgacggcggcggcagcg 853
to top
>dbj|AK073313.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033027F03, full
           insert sequence
          Length = 1389

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 170 cgacgacggcggcggcagcg 189
           ||||||||||||||||||||
Sbjct: 578 cgacgacggcggcggcagcg 559
to top
>gb|AC154860.2| Mus musculus BAC clone RP23-9N20 from 13, complete sequence
          Length = 192309

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 84     atggccattcacatgtgcta 103
              ||||||||||||||||||||
Sbjct: 164726 atggccattcacatgtgcta 164707
to top
>gb|AC154321.2| Mus musculus BAC clone RP23-316B9 from 13, complete sequence
          Length = 177816

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 84    atggccattcacatgtgcta 103
             ||||||||||||||||||||
Sbjct: 90724 atggccattcacatgtgcta 90743
to top
>dbj|AK062282.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-100-C06, full
           insert sequence
          Length = 1677

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 170 cgacgacggcggcggcagcg 189
           ||||||||||||||||||||
Sbjct: 868 cgacgacggcggcggcagcg 849
to top
>emb|AL442108.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0124E07, complete
             sequence
          Length = 127181

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 332   ccgctcccgccgcgccgactgcgc 355
             ||||||||||||| ||||||||||
Sbjct: 93318 ccgctcccgccgctccgactgcgc 93341
to top
>gb|AF114162.1|AF114162 Lolium temulentum gibberellin MYB transcription factor (GAMyb)
           mRNA, complete cds
          Length = 1869

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 169 ccgacgacggcggcggcagc 188
           ||||||||||||||||||||
Sbjct: 70  ccgacgacggcggcggcagc 89
to top
>dbj|AP003086.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-452H21, complete
             sequence
          Length = 145423

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 328   acgcccgctcccgccgcgcc 347
             ||||||||||||||||||||
Sbjct: 70174 acgcccgctcccgccgcgcc 70193
to top
>dbj|AP001885.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-157K17, complete
              sequence
          Length = 173052

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 176    cggcggcggcagcgcgggcg 195
              ||||||||||||||||||||
Sbjct: 142881 cggcggcggcagcgcgggcg 142862
to top
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 176     cggcggcggcagcgcgggcgtcgacgaa 203
               |||||||||| | |||||||||||||||
Sbjct: 3220956 cggcggcggcggagcgggcgtcgacgaa 3220929
to top
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 167     caccgacgacggcggcggca 186
               ||||||||||||||||||||
Sbjct: 3984696 caccgacgacggcggcggca 3984677
to top
>emb|AL731882.2|CNS08C8M Oryza sativa chromosome 12, . BAC OSJNBb0028H07 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 132682

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 167   caccgacgacggcggcggca 186
             ||||||||||||||||||||
Sbjct: 21130 caccgacgacggcggcggca 21111
to top
>emb|AL732376.2|CNS08C8Z Oryza sativa chromosome 12, . BAC OSJNBa0086B10 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 152090

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 167    caccgacgacggcggcggca 186
              ||||||||||||||||||||
Sbjct: 146696 caccgacgacggcggcggca 146677


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,614,977
Number of Sequences: 3902068
Number of extensions: 2614977
Number of successful extensions: 76005
Number of sequences better than 10.0: 85
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 73641
Number of HSP's gapped (non-prelim): 2364
length of query: 389
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 367
effective length of database: 17,147,199,772
effective search space: 6293022316324
effective search space used: 6293022316324
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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