No.
Definition
Score (bits)
E Value
1 ref|NM_186012.1| Oryza sativa (japonica cultivar-group), mRNA
161
2e-36
2 dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D...
161
2e-36
3 dbj|AP004378.5| Oryza sativa (japonica cultivar-group) genomic D...
161
2e-36
4 gb|AY542311.1| Sorghum bicolor clone SB20O07 b1-1, b1-2, putativ...
123
5e-25
5 ref|XM_473461.1| Oryza sativa (japonica cultivar-group), predic...
111
2e-21
6 emb|AL606647.3|OSJN00096 Oryza sativa genomic DNA, chromosome 4,...
111
2e-21
7 dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D...
111
2e-21
8 dbj|AK120794.1| Oryza sativa (japonica cultivar-group) cDNA clon...
111
2e-21
9 ref|XM_473462.1| Oryza sativa (japonica cultivar-group), predic...
103
5e-19
10 gb|AF466203.1| Zea mays clone ZMBBb_0092E12, partial sequence
103
5e-19
11 gb|AF318075.1| Zea mays cis-zeatin O-glucosyltransferase (ciszog...
103
5e-19
12 gb|AY082660.2| Zea mays cis-zeatin O-glucosyltransferase 2 (cisz...
103
5e-19
13 ref|XM_473518.1| Oryza sativa (japonica cultivar-group), predic...
92
2e-15
14 emb|AL606628.3|OSJN00055 Oryza sativa genomic DNA, chromosome 4,...
92
2e-15
15 ref|XM_473460.1| Oryza sativa (japonica cultivar-group), predic...
90
7e-15
16 dbj|AK101107.1| Oryza sativa (japonica cultivar-group) cDNA clon...
90
7e-15
17 dbj|AK111866.1| Oryza sativa (japonica cultivar-group) cDNA clon...
84
5e-13
18 gb|AC136009.4| Oryza sativa (japonica cultivar-group) chromosome...
78
3e-11
19 dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D...
78
3e-11
20 gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome...
78
3e-11
21 gb|AC137753.4| Oryza sativa (japonica cultivar-group) chromosome...
70
7e-09
22 gb|AC136956.4| Oryza sativa (japonica cultivar-group) chromosome...
70
7e-09
23 ref|XM_473522.1| Oryza sativa (japonica cultivar-group), predic...
60
7e-06
24 ref|NM_194678.1| Oryza sativa (japonica cultivar-group) putative...
44
0.39
25 gb|AC079128.2| Oryza sativa (japonica cultivar-group) chromosome...
44
0.39
26 gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome...
44
0.39
27 gb|AC131967.1| Oryza sativa (japonica cultivar-group) chromosome...
44
0.39
28 dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D...
44
0.39
29 emb|X07653.1|BYDVPAV Barley yellow dwarf virus - PAV genomic RNA
44
0.39
30 gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome...
44
0.39
31 dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D...
42
1.5
32 dbj|AP005511.3| Oryza sativa (japonica cultivar-group) genomic D...
42
1.5
33 dbj|AP004018.3| Oryza sativa (japonica cultivar-group) genomic D...
42
1.5
34 ref|XM_480258.1| Oryza sativa (japonica cultivar-group), mRNA
40
6.1
35 ref|XM_477103.1| Oryza sativa (japonica cultivar-group), mRNA
40
6.1
36 gb|AE017346.1| Cryptococcus neoformans var. neoformans JEC21 chr...
40
6.1
37 gb|AC135460.3| Oryza sativa (japonica cultivar-group) chromosome...
40
6.1
38 gb|AC138000.3| Oryza sativa (japonica cultivar-group) chromosome...
40
6.1
39 gb|AC151537.1| Oryza sativa (japonica cultivar-group) chromosome...
40
6.1
40 gb|AC151407.1| Oryza sativa (japonica cultivar-group) chromosome...
40
6.1
41 gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
40
6.1
42 ref|XM_571480.1| Cryptococcus neoformans var. neoformans JEC21 h...
40
6.1
43 gb|AC123049.4| Mus musculus BAC clone RP24-360B3 from chromosome...
40
6.1
44 emb|CR293508.9| Zebrafish DNA sequence from clone CH211-13K20 in...
40
6.1
45 emb|BX294152.1| Pirellula sp. strain 1 complete genome; segment ...
40
6.1
46 emb|AL939106.1|SCO939106 Streptomyces coelicolor A3(2) complete ...
40
6.1
47 gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
40
6.1
48 dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D...
40
6.1
49 dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D...
40
6.1
50 dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D...
40
6.1
51 gb|AF340166.1|AF340166 Streptomyces verticillus nonribosomal pep...
40
6.1
52 dbj|AP003282.2| Oryza sativa (japonica cultivar-group) genomic D...
40
6.1
53 gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
40
6.1
54 gb|AF226688.1|AF226688 Bombyx mori fibroin heavy chain Fib-H (fi...
40
6.1
55 dbj|AP006050.3| Oryza sativa (japonica cultivar-group) genomic D...
40
6.1
56 dbj|AP005695.3| Oryza sativa (japonica cultivar-group) genomic D...
40
6.1
57 dbj|AB112586.1| Streptomyces sp. WA46 genes for salicylate degra...
40
6.1
58 dbj|AP003748.4| Oryza sativa (japonica cultivar-group) genomic D...
40
6.1
59 dbj|AP006344.3| Oryza sativa (japonica cultivar-group) genomic D...
40
6.1
60 dbj|AP004560.3| Oryza sativa (japonica cultivar-group) genomic D...
40
6.1
61 dbj|AK120944.1| Oryza sativa (japonica cultivar-group) cDNA clon...
40
6.1
62 dbj|AK120829.1| Oryza sativa (japonica cultivar-group) cDNA clon...
40
6.1
63 gb|AE004969.1| Neisseria gonorrhoeae FA 1090, complete genome
40
6.1
64 gb|AF034546.1|AF034546 Homo sapiens sorting nexin 3 (SNX3) mRNA,...
40
6.1
65 gb|AC151927.2| Phaeodactylum tricornutum clone JGIAHOK-9H1, comp...
40
6.1
66 dbj|AB047360.1| Homo sapiens SNX 3A mRNA for sorting nexin 3A, c...
40
6.1
>dbj|AP008213.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
sequence
Length = 29644043
Score = 161 bits (81), Expect = 2e-36
Identities = 138/157 (87%)
Strand = Plus / Minus
Query: 91 ccgtcgccgtggtgacagtacctttcccggcgcagggccacctgaaccagctcctgcacc 150
|||||||||| ||||| || || |||||| ||||||| ||||||||||||||||| ||||
Sbjct: 27794150 ccgtcgccgtcgtgacggtgccgttcccgacgcagggtcacctgaaccagctcctccacc 27794091
Query: 151 tgtcgctgctgctcgcgagggaggggatccccgtgcacttcgccgcgccggagccgcacc 210
|||| ||||||||||| | || || ||||||||| ||||||||||||||||||||
Sbjct: 27794090 tgtccatgctgctcgcgtcgcgcggcctcgccgtgcactacgccgcgccggagccgcacc 27794031
Query: 211 tccgggaggcccgcgcgcgcgtgcacggctgggacgc 247
||||||||||||||||||| |||||||||||||||||
Sbjct: 27794030 tccgggaggcccgcgcgcgggtgcacggctgggacgc 27793994
Score = 75.8 bits (38), Expect = 1e-10
Identities = 53/58 (91%)
Strand = Plus / Minus
Query: 394 ccgcgctcctgcacgagctctcggcgtcccaccgccgcgtcgtggtcctgcacgaccg 451
|||||||||| | |||||||||||||| ||||||||||||||| || |||||||||||
Sbjct: 27793841 ccgcgctcctccgcgagctctcggcgtgccaccgccgcgtcgtcgtgctgcacgaccg 27793784
Score = 40.1 bits (20), Expect = 6.1
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 250 gctccctcctcgccctccgc 269
||||||||||||||||||||
Sbjct: 11670989 gctccctcctcgccctccgc 11670970
Score = 40.1 bits (20), Expect = 6.1
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 364 gcgacggcggcgccgcccgg 383
||||||||||||||||||||
Sbjct: 5923295 gcgacggcggcgccgcccgg 5923314
>gb|AY542311.1 | Sorghum bicolor clone SB20O07 b1-1, b1-2, putative genetic modifier,
hypothetical protein, putative NAM protein, putative
cis-zeatin O-glucosyltransferases, putative small nuclear
ribonucleoprotein, putative cis-zeatin
O-glucosyltransferase, putative glutathione peroxidase,
putative copper-exporting ATPases, putative
serine/threonine dehydratase, and putative actin
depolymerizing factor genes, complete cds; and
hypothetical protein gene, partial cds
Length = 157237
Score = 123 bits (62), Expect = 5e-25
Identities = 128/150 (85%)
Strand = Plus / Plus
Query: 96 gccgtggtgacagtacctttcccggcgcagggccacctgaaccagctcctgcacctgtcg 155
||||||||| | || || ||||||||||||||||| ||||||||||| || |||||||||
Sbjct: 68496 gccgtggtggccgtgccgttcccggcgcagggccatctgaaccagctgctccacctgtcg 68555
Query: 156 ctgctgctcgcgagggaggggatccccgtgcacttcgccgcgccggagccgcacctccgg 215
||||||||||| | ||| || ||||||||| ||| |||||| ||||||| |||||
Sbjct: 68556 ctgctgctcgcctcgcggggcctctccgtgcactacgcggcgccgccgccgcacgtccgg 68615
Query: 216 gaggcccgcgcgcgcgtgcacggctgggac 245
|||| ||||||||||||||||||||||||
Sbjct: 68616 caggcgcgcgcgcgcgtgcacggctgggac 68645
Score = 121 bits (61), Expect = 2e-24
Identities = 115/133 (86%)
Strand = Plus / Plus
Query: 114 ttcccggcgcagggccacctgaaccagctcctgcacctgtcgctgctgctcgcgagggag 173
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |
Sbjct: 77683 ttcccggcgcagggccacctgaaccagctcctgcacctgtcgctgcagctcgcgtcgcgg 77742
Query: 174 gggatccccgtgcacttcgccgcgccggagccgcacctccgggaggcccgcgcgcgcgtg 233
|| | |||||||||| ||| ||||| | | |||| |||| ||||||||||||| |||
Sbjct: 77743 ggcctgcccgtgcactacgcggcgcccgcggcgcaggtccgccaggcccgcgcgcgtgtg 77802
Query: 234 cacggctgggacg 246
|||||||||||||
Sbjct: 77803 cacggctgggacg 77815
Score = 101 bits (51), Expect = 2e-18
Identities = 113/131 (86%), Gaps = 2/131 (1%)
Strand = Plus / Plus
Query: 114 ttcccggcgcagggccacctgaaccagctcctgcacctgtcgctgctgctcgcgagggag 173
||||||||||| |||||||||||||||||||||||||| |||||||||||||| || | |
Sbjct: 86970 ttcccggcgcaaggccacctgaaccagctcctgcacctatcgctgctgctcgc-agcgcg 87028
Query: 174 -gggatccccgtgcacttcgccgcgccggagccgcacctccgggaggcccgcgcgcgcgt 232
|| |||||||||||| ||| ||||| | | |||| | || ||||||||||||||||
Sbjct: 87029 cggtctccccgtgcactacgcggcgcccgcggagcacgtgcgccaggcccgcgcgcgcgt 87088
Query: 233 gcacggctggg 243
|||||||||||
Sbjct: 87089 gcacggctggg 87099
Score = 99.6 bits (50), Expect = 8e-18
Identities = 110/130 (84%)
Strand = Plus / Minus
Query: 114 ttcccggcgcagggccacctgaaccagctcctgcacctgtcgctgctgctcgcgagggag 173
||||||||||||||||||||||||||||| ||||||||||| |||| |||||| |
Sbjct: 86013 ttcccggcgcagggccacctgaaccagctgctgcacctgtccctgcagctcgccgcgcgc 85954
Query: 174 gggatccccgtgcacttcgccgcgccggagccgcacctccgggaggcccgcgcgcgcgtg 233
||| | |||||||||| ||| ||||| | | |||| |||| |||||||||||||||||
Sbjct: 85953 gggctgcccgtgcactacgcggcgcccgcggagcacgtccgccaggcccgcgcgcgcgtg 85894
Query: 234 cacggctggg 243
||||||||||
Sbjct: 85893 cacggctggg 85884
Score = 71.9 bits (36), Expect = 2e-09
Identities = 105/128 (82%)
Strand = Plus / Plus
Query: 116 cccggcgcagggccacctgaaccagctcctgcacctgtcgctgctgctcgcgagggaggg 175
|||||||||||||||||| ||| | || ||| ||||||||||||||||| |||
Sbjct: 95329 cccggcgcagggccacctcaacggcatgctacacatgtcgctgctgctcgcgtcccgggg 95388
Query: 176 gatccccgtgcacttcgccgcgccggagccgcacctccgggaggcccgcgcgcgcgtgca 235
|||||||||||| ||| ||||| | ||||||| |||| |||| ||||||||||||||
Sbjct: 95389 tctccccgtgcactacgcggcgcctgggccgcacgtccgccaggcgcgcgcgcgcgtgca 95448
Query: 236 cggctggg 243
||||||||
Sbjct: 95449 cggctggg 95456
Score = 60.0 bits (30), Expect = 7e-06
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 396 gcgctcctgcacgagctctcggcgtcccaccgccgcgtcgtggtcctgcacgac 449
|||||||| | || |||||| |||||||||||||||||||| |||||| |||||
Sbjct: 85731 gcgctcctccgcgggctctccgcgtcccaccgccgcgtcgtcgtcctgtacgac 85678
Score = 54.0 bits (27), Expect = 4e-04
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 420 tcccaccgccgcgtcgtggtcctgcacgacc 450
|||||||||||||||||||||||| ||||||
Sbjct: 87282 tcccaccgccgcgtcgtggtcctgtacgacc 87312
Score = 48.1 bits (24), Expect = 0.025
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 321 tcgccgttccccacgcacatgcagcccctgttcgaggcct 360
|||||||||||||||||| | |||||||||||||||||
Sbjct: 77896 tcgccgttccccacgcacctcatgcccctgttcgaggcct 77935
Score = 42.1 bits (21), Expect = 1.5
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 410 gctctcggcgtcccaccgccgcgtcgtggtcctgcacgaccgcat 454
|||||| || || |||||||||||||| || |||||||||||||
Sbjct: 77979 gctctccgcctcgcaccgccgcgtcgtcgtggtgcacgaccgcat 78023
>emb|AL606647.3 |OSJN00096 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0012E24,
complete sequence
Length = 127506
Score = 111 bits (56), Expect = 2e-21
Identities = 167/204 (81%)
Strand = Plus / Minus
Query: 114 ttcccggcgcagggccacctgaaccagctcctgcacctgtcgctgctgctcgcgagggag 173
|||||||||||||||||||||||||||||| |||||||||| |||||||||||| | |
Sbjct: 92157 ttcccggcgcagggccacctgaaccagctcatgcacctgtctctgctgctcgcgtcgcgg 92098
Query: 174 gggatccccgtgcacttcgccgcgccggagccgcacctccgggaggcccgcgcgcgcgtg 233
||| | |||||||| ||| |||||| | ||||||||||| |||| || |||| ||
Sbjct: 92097 gggctggacgtgcactacgcggcgccgccggcgcacctccggcaggcgcggttgcgcctg 92038
Query: 234 cacggctgggacgcgggctccctcctcgccctccgcttccgcgccctcgacgtcccggcg 293
|||||||||||| | | | | |||| | || ||||||||| || |||||||||||| ||
Sbjct: 92037 cacggctgggaccccgacgcgctccgctccatccgcttccacgacctcgacgtccccgcc 91978
Query: 294 cacgcgtccccggaccccgacccg 317
||| ||||||| ||||||||||
Sbjct: 91977 tacgagtccccgccccccgacccg 91954
Score = 103 bits (52), Expect = 5e-19
Identities = 145/176 (82%)
Strand = Plus / Minus
Query: 114 ttcccggcgcagggccacctgaaccagctcctgcacctgtcgctgctgctcgcgagggag 173
|||||||||||||||||||||||||||||| |||||||||| |||||||||||| |
Sbjct: 96805 ttcccggcgcagggccacctgaaccagctcatgcacctgtccctgctgctcgcgtcgcgt 96746
Query: 174 gggatccccgtgcacttcgccgcgccggagccgcacctccgggaggcccgcgcgcgcgtg 233
||| | |||||||| ||| |||||| | ||||||||||| |||| || ||||| ||
Sbjct: 96745 gggctggacgtgcactacgcggcgccgccggcgcacctccggcaggcgcggtcgcgcctg 96686
Query: 234 cacggctgggacgcgggctccctcctcgccctccgcttccgcgccctcgacgtccc 289
|||||||||||| | | | | |||| | || ||||||||| || ||||||||||||
Sbjct: 96685 cacggctgggaccccgacgcgctccgctccatccgcttccacgacctcgacgtccc 96630
Score = 89.7 bits (45), Expect = 7e-15
Identities = 51/53 (96%)
Strand = Plus / Minus
Query: 114 ttcccggcgcagggccacctgaaccagctcctgcacctgtcgctgctgctcgc 166
|||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct: 87612 ttcccggcgcagggccacctcaaccagctcctgcacctgtcgctgcagctcgc 87560
Score = 44.1 bits (22), Expect = 0.39
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 409 agctctcggcgtcccaccgccgcgtcgtggtcctgcacgaccgcat 454
||||||| || ||| ||||||||||||| ||| || ||||||||||
Sbjct: 87314 agctctccgcctcctaccgccgcgtcgtcgtcgtgtacgaccgcat 87269
>dbj|AP008210.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 111 bits (56), Expect = 2e-21
Identities = 167/204 (81%)
Strand = Plus / Minus
Query: 114 ttcccggcgcagggccacctgaaccagctcctgcacctgtcgctgctgctcgcgagggag 173
|||||||||||||||||||||||||||||| |||||||||| |||||||||||| | |
Sbjct: 27823485 ttcccggcgcagggccacctgaaccagctcatgcacctgtctctgctgctcgcgtcgcgg 27823426
Query: 174 gggatccccgtgcacttcgccgcgccggagccgcacctccgggaggcccgcgcgcgcgtg 233
||| | |||||||| ||| |||||| | ||||||||||| |||| || |||| ||
Sbjct: 27823425 gggctggacgtgcactacgcggcgccgccggcgcacctccggcaggcgcggttgcgcctg 27823366
Query: 234 cacggctgggacgcgggctccctcctcgccctccgcttccgcgccctcgacgtcccggcg 293
|||||||||||| | | | | |||| | || ||||||||| || |||||||||||| ||
Sbjct: 27823365 cacggctgggaccccgacgcgctccgctccatccgcttccacgacctcgacgtccccgcc 27823306
Query: 294 cacgcgtccccggaccccgacccg 317
||| ||||||| ||||||||||
Sbjct: 27823305 tacgagtccccgccccccgacccg 27823282
Score = 103 bits (52), Expect = 5e-19
Identities = 145/176 (82%)
Strand = Plus / Minus
Query: 114 ttcccggcgcagggccacctgaaccagctcctgcacctgtcgctgctgctcgcgagggag 173
|||||||||||||||||||||||||||||| |||||||||| |||||||||||| |
Sbjct: 27828133 ttcccggcgcagggccacctgaaccagctcatgcacctgtccctgctgctcgcgtcgcgt 27828074
Query: 174 gggatccccgtgcacttcgccgcgccggagccgcacctccgggaggcccgcgcgcgcgtg 233
||| | |||||||| ||| |||||| | ||||||||||| |||| || ||||| ||
Sbjct: 27828073 gggctggacgtgcactacgcggcgccgccggcgcacctccggcaggcgcggtcgcgcctg 27828014
Query: 234 cacggctgggacgcgggctccctcctcgccctccgcttccgcgccctcgacgtccc 289
|||||||||||| | | | | |||| | || ||||||||| || ||||||||||||
Sbjct: 27828013 cacggctgggaccccgacgcgctccgctccatccgcttccacgacctcgacgtccc 27827958
Score = 91.7 bits (46), Expect = 2e-15
Identities = 52/54 (96%)
Strand = Plus / Plus
Query: 114 ttcccggcgcagggccacctgaaccagctcctgcacctgtcgctgctgctcgcg 167
|||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct: 28288458 ttcccggcgcagggccacctcaaccagctcctgcacctgtcgctgcagctcgcg 28288511
Score = 89.7 bits (45), Expect = 7e-15
Identities = 51/53 (96%)
Strand = Plus / Minus
Query: 114 ttcccggcgcagggccacctgaaccagctcctgcacctgtcgctgctgctcgc 166
|||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct: 27818940 ttcccggcgcagggccacctcaaccagctcctgcacctgtcgctgcagctcgc 27818888
Score = 63.9 bits (32), Expect = 4e-07
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 183 gtgcacttcgccgcgccggagccgcacctccgggaggcccgcgcgcgcgtgcacggctgg 242
||||||| ||| ||||||| |||||| ||||| |||| || ||||||||||||||||||
Sbjct: 28288533 gtgcactacgctgcgccggcgccgcagctccgccaggcgcgggcgcgcgtgcacggctgg 28288592
Query: 243 gacg 246
||||
Sbjct: 28288593 gacg 28288596
Score = 60.0 bits (30), Expect = 7e-06
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 114 ttcccggcgcagggccacctgaaccagctcctgcacctgtcgctgctgctcgcg 167
|||||||||||||| ||||| |||||| | |||||||||||||| | |||||||
Sbjct: 28310001 ttcccggcgcagggtcacctcaaccaggtgctgcacctgtcgctccagctcgcg 28310054
Score = 58.0 bits (29), Expect = 3e-05
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 186 cacttcgccgcgccggagccgcacctccgggaggcccgcgcgcgcgtgcacggctgggac 245
|||| ||| ||||||| |||||| ||||| |||| || |||||||||||||||||||||
Sbjct: 28310079 cactacgctgcgccggcgccgcagctccgccaggcgcgggcgcgcgtgcacggctgggac 28310138
Query: 246 g 246
|
Sbjct: 28310139 g 28310139
Score = 44.1 bits (22), Expect = 0.39
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 409 agctctcggcgtcccaccgccgcgtcgtggtcctgcacgaccgcat 454
||||||| || ||| ||||||||||||| ||| || ||||||||||
Sbjct: 27818642 agctctccgcctcctaccgccgcgtcgtcgtcgtgtacgaccgcat 27818597
>emb|AL606628.3 |OSJN00055 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0017B10,
complete sequence
Length = 150957
Score = 91.7 bits (46), Expect = 2e-15
Identities = 52/54 (96%)
Strand = Plus / Plus
Query: 114 ttcccggcgcagggccacctgaaccagctcctgcacctgtcgctgctgctcgcg 167
|||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct: 80766 ttcccggcgcagggccacctcaaccagctcctgcacctgtcgctgcagctcgcg 80819
Score = 63.9 bits (32), Expect = 4e-07
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 183 gtgcacttcgccgcgccggagccgcacctccgggaggcccgcgcgcgcgtgcacggctgg 242
||||||| ||| ||||||| |||||| ||||| |||| || ||||||||||||||||||
Sbjct: 80841 gtgcactacgctgcgccggcgccgcagctccgccaggcgcgggcgcgcgtgcacggctgg 80900
Query: 243 gacg 246
||||
Sbjct: 80901 gacg 80904
Score = 60.0 bits (30), Expect = 7e-06
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 114 ttcccggcgcagggccacctgaaccagctcctgcacctgtcgctgctgctcgcg 167
|||||||||||||| ||||| |||||| | |||||||||||||| | |||||||
Sbjct: 102309 ttcccggcgcagggtcacctcaaccaggtgctgcacctgtcgctccagctcgcg 102362
Score = 58.0 bits (29), Expect = 3e-05
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 186 cacttcgccgcgccggagccgcacctccgggaggcccgcgcgcgcgtgcacggctgggac 245
|||| ||| ||||||| |||||| ||||| |||| || |||||||||||||||||||||
Sbjct: 102387 cactacgctgcgccggcgccgcagctccgccaggcgcgggcgcgcgtgcacggctgggac 102446
Query: 246 g 246
|
Sbjct: 102447 g 102447
>dbj|AP008217.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
sequence
Length = 28386948
Score = 77.8 bits (39), Expect = 3e-11
Identities = 66/75 (88%)
Strand = Plus / Plus
Query: 93 gtcgccgtggtgacagtacctttcccggcgcagggccacctgaaccagctcctgcacctg 152
|||||||| ||| | || || |||||||||||||||||||| |||||||||||||| |||
Sbjct: 17403973 gtcgccgttgtggcggtgccattcccggcgcagggccacctcaaccagctcctgcatctg 17404032
Query: 153 tcgctgctgctcgcg 167
||| ||| |||||||
Sbjct: 17404033 tcgttgcagctcgcg 17404047
Score = 69.9 bits (35), Expect = 7e-09
Identities = 65/75 (86%)
Strand = Plus / Plus
Query: 93 gtcgccgtggtgacagtacctttcccggcgcagggccacctgaaccagctcctgcacctg 152
|||||||| ||| | || || ||||||| ||||| |||||| |||||||||||||| |||
Sbjct: 19869720 gtcgccgttgtggcggtgccattcccggagcaggaccacctcaaccagctcctgcatctg 19869779
Query: 153 tcgctgctgctcgcg 167
||||||| |||||||
Sbjct: 19869780 tcgctgcagctcgcg 19869794
Score = 58.0 bits (29), Expect = 3e-05
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 183 gtgcacttcgccgcgccggagccgcacctccgggaggcccgcgcgcgcgtgcacggc 239
||||||| ||||||||||| ||||||| |||| |||| || |||||||||||||||
Sbjct: 17404063 gtgcactacgccgcgccggcgccgcacgtccgccaggcgcgagcgcgcgtgcacggc 17404119
Score = 40.1 bits (20), Expect = 6.1
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 394 ccgcgctcctgcacgagctc 413
||||||||||||||||||||
Sbjct: 7665611 ccgcgctcctgcacgagctc 7665630
>dbj|AB047360.1 | Homo sapiens SNX 3A mRNA for sorting nexin 3A, complete cds
Length = 1105
Score = 40.1 bits (20), Expect = 6.1
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 245 cgcgggctccctcctcgccc 264
||||||||||||||||||||
Sbjct: 20 cgcgggctccctcctcgccc 1
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,489,663
Number of Sequences: 3902068
Number of extensions: 3489663
Number of successful extensions: 90670
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 88020
Number of HSP's gapped (non-prelim): 2639
length of query: 454
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 432
effective length of database: 17,147,199,772
effective search space: 7407590301504
effective search space used: 7407590301504
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)