ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast55a02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
2gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.5
3emb|AL954160.5|CNS08CCY Oryza sativa chromosome 12, . BAC OSJNBb... 42 1.5
4emb|AL831806.5|CNS08CAJ Oryza sativa chromosome 12, . BAC OSJNBb... 42 1.5
5gb|AC137884.9| Mus musculus chromosome 1, clone RP23-152I6, comp... 40 5.8
6emb|CR940310.6| M.truncatula DNA sequence from clone MTH2-5D8 on... 40 5.8
7emb|AL591670.10| Human DNA sequence from clone RP11-175C15 on ch... 40 5.8
8gb|BC097400.1| Rattus norvegicus methyltransferase-like 3, mRNA ... 40 5.8
9gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 40 5.8
10ref|NM_001024794.1| Rattus norvegicus methyltransferase-like 3 (... 40 5.8

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 288     ttaatttctattagcacgctt 308
               |||||||||||||||||||||
Sbjct: 7209013 ttaatttctattagcacgctt 7208993



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 288     ttaatttctattagcacgctt 308
               |||||||||||||||||||||
Sbjct: 7208892 ttaatttctattagcacgctt 7208872



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>emb|AL954160.5|CNS08CCY Oryza sativa chromosome 12, . BAC OSJNBb0078J08 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 121243

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 288   ttaatttctattagcacgctt 308
             |||||||||||||||||||||
Sbjct: 47098 ttaatttctattagcacgctt 47118



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>emb|AL831806.5|CNS08CAJ Oryza sativa chromosome 12, . BAC OSJNBb0106P21 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 141427

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 288   ttaatttctattagcacgctt 308
             |||||||||||||||||||||
Sbjct: 65326 ttaatttctattagcacgctt 65306



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>gb|AC137884.9| Mus musculus chromosome 1, clone RP23-152I6, complete sequence
          Length = 194164

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 315    caaaatggcattgctttttc 334
              ||||||||||||||||||||
Sbjct: 136967 caaaatggcattgctttttc 136948



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>emb|CR940310.6| M.truncatula DNA sequence from clone MTH2-5D8 on chromosome 3, complete
             sequence
          Length = 121689

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 272   gtgtccactttgtttgttaatttc 295
             ||||||||||||||||||| ||||
Sbjct: 21209 gtgtccactttgtttgttattttc 21232



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>emb|AL591670.10| Human DNA sequence from clone RP11-175C15 on chromosome 1, complete
            sequence
          Length = 40166

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 273  tgtccactttgtttgttaat 292
            ||||||||||||||||||||
Sbjct: 9529 tgtccactttgtttgttaat 9548



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>gb|BC097400.1| Rattus norvegicus methyltransferase-like 3, mRNA (cDNA clone
           MGC:114445 IMAGE:7453630), complete cds
          Length = 1933

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 339 cagtcaactaaggaacagca 358
           ||||||||||||||||||||
Sbjct: 760 cagtcaactaaggaacagca 779



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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 345    actaaggaacagcatatgga 364
              ||||||||||||||||||||
Sbjct: 226101 actaaggaacagcatatgga 226120



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>ref|NM_001024794.1| Rattus norvegicus methyltransferase-like 3 (Mettl3), mRNA
          Length = 1933

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 339 cagtcaactaaggaacagca 358
           ||||||||||||||||||||
Sbjct: 760 cagtcaactaaggaacagca 779


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,266,096
Number of Sequences: 3902068
Number of extensions: 2266096
Number of successful extensions: 43201
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43145
Number of HSP's gapped (non-prelim): 56
length of query: 435
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 413
effective length of database: 17,147,199,772
effective search space: 7081793505836
effective search space used: 7081793505836
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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