ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast52h06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_192211.1| Oryza sativa (japonica cultivar-group), predic... 76 1e-10
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 76 1e-10
3dbj|AP003378.4| Oryza sativa (japonica cultivar-group) genomic D... 76 1e-10
4dbj|AP003254.3| Oryza sativa (japonica cultivar-group) genomic D... 76 1e-10
5ref|NM_192210.1| Oryza sativa (japonica cultivar-group), predic... 70 7e-09
6dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 68 3e-08
7dbj|AP005456.3| Oryza sativa (japonica cultivar-group) genomic D... 68 3e-08
8ref|NM_192207.1| Oryza sativa (japonica cultivar-group), predic... 64 4e-07
9dbj|AK067688.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 4e-07
10gb|CP000249.1| Frankia sp. CcI3, complete genome 44 0.41
11gb|AC002472.8| Homo sapiens Chromosome 22q11.2 PAC Clone p_n5 In... 44 0.41
12gb|AC002470.17| Homo sapiens Chromosome 22q11.2 BAC Clone b135h6... 44 0.41
13gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 44 0.41
14ref|NM_191518.1| Oryza sativa (japonica cultivar-group), predic... 42 1.6
15ref|XM_361521.1| Magnaporthe grisea 70-15 hypothetical protein (... 42 1.6
16ref|XM_958316.1| Neurospora crassa OR74A hypothetical protein (N... 42 1.6
17ref|XM_329484.1| Neurospora crassa OR74A hypothetical protein (N... 42 1.6
18emb|AL391005.9| Human DNA sequence from clone RP11-288A5 on chro... 42 1.6
19emb|BX284762.1|NCB13B3 Neurospora crassa DNA linkage group II BA... 42 1.6
20gb|BC109664.1| Bos taurus cDNA clone MGC:134152 IMAGE:8054240, c... 42 1.6
21ref|NM_001015558.1| Bos taurus thioredoxin-related transmembrane... 42 1.6
22dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 42 1.6
23dbj|AP003406.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
24gb|BT021083.1| Bos taurus thioredoxin-related transmembrane prot... 42 1.6
25gb|M90412.1|STMHRDC Streptomyces aureofaciens principal sigma- l... 42 1.6
26ref|XM_474851.1| Oryza sativa (japonica cultivar-group), predic... 40 6.5
27gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 40 6.5
28gb|AY657306.1| Synthetic construct Peudomonas aeruginosa clone F... 40 6.5
29gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 6.5
30ref|XM_501205.1| Yarrowia lipolytica CLIB122, YALI0B22066g predi... 40 6.5
31gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 40 6.5
32emb|AJ633545.1| Myxococcus xanthus groEL gene for chaperonin GroEL 40 6.5
33gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 40 6.5
34emb|AJ620477.1| Angiococcus disciformis partial ORF16, ORF15, OR... 40 6.5
35gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome 40 6.5
36dbj|AB228618.1| Aspergillus oryzae cDNA, contig sequence: AoEST5491 40 6.5
37dbj|AP007159.1| Aspergillus oryzae RIB40 genomic DNA, SC026 40 6.5
38ref|XM_680828.1| PREDICTED: Danio rerio similar to syntaxin bind... 40 6.5
39ref|XM_679277.1| PREDICTED: Danio rerio similar to syntaxin bind... 40 6.5
40emb|BX470198.7| Zebrafish DNA sequence from clone DKEY-18G6 in l... 40 6.5
41emb|BX470066.7| Zebrafish DNA sequence from clone RP71-10D23 in ... 40 6.5
42dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
43dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
44gb|AE004814.1| Pseudomonas aeruginosa PAO1, section 375 of 529 o... 40 6.5
45gb|AE004583.1| Pseudomonas aeruginosa PAO1, section 144 of 529 o... 40 6.5
46gb|AC134237.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.5
47gb|AC121490.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.5
48dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete g... 40 6.5
49emb|AL732333.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 40 6.5
50emb|AL606994.3|OSJN00114 Oryza sativa genomic DNA, chromosome 4,... 40 6.5
51gb|AY781344.1| Oryza sativa (japonica cultivar-group) putative c... 40 6.5
52emb|CR382128.1| Yarrowia lipolytica chromosome B of strain CLIB1... 40 6.5 
>ref|NM_192211.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1551

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 44/46 (95%)
 Strand = Plus / Plus

                                                         
Query: 58  tgatcatctccatctaccagccgtcgcacctggcgagcctcatccc 103
           |||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 407 tgatcatctccatctaccagccgtcgcacctggccagcctgatccc 452



 Score = 44.1 bits (22), Expect = 0.41
 Identities = 46/54 (85%)
 Strand = Plus / Plus

                                                                 
Query: 154 aggagatcaccttctccgacgtctccatcaggctcttcaccgacgtcatcggcc 207
           |||||||||||||||||||  ||||  |||| |||  ||||||||| |||||||
Sbjct: 503 aggagatcaccttctccgatctctctctcagcctcgccaccgacgtgatcggcc 556
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 44/46 (95%)
 Strand = Plus / Plus

                                                              
Query: 58       tgatcatctccatctaccagccgtcgcacctggcgagcctcatccc 103
                |||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 29039518 tgatcatctccatctaccagccgtcgcacctggccagcctgatccc 29039563



 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 50/55 (90%)
 Strand = Plus / Plus

                                                                       
Query: 49       tgcggaacgtgatcatctccatctaccagccgtcgcacctggcgagcctcatccc 103
                |||| ||| ||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct: 29033197 tgcgaaacatgatcatctccatctaccagccgtctcacctggctagcctgatccc 29033251



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 41/44 (93%)
 Strand = Plus / Plus

                                                            
Query: 48       atgcggaacgtgatcatctccatctaccagccgtcgcacctggc 91
                ||||| ||| ||||| ||||||||||||||||||||||||||||
Sbjct: 29017548 atgcgaaacatgatcctctccatctaccagccgtcgcacctggc 29017591



 Score = 44.1 bits (22), Expect = 0.41
 Identities = 46/54 (85%)
 Strand = Plus / Plus

                                                                      
Query: 154      aggagatcaccttctccgacgtctccatcaggctcttcaccgacgtcatcggcc 207
                |||||||||||||||||||  ||||  |||| |||  ||||||||| |||||||
Sbjct: 29039614 aggagatcaccttctccgatctctctctcagcctcgccaccgacgtgatcggcc 29039667



 Score = 44.1 bits (22), Expect = 0.41
 Identities = 40/46 (86%)
 Strand = Plus / Plus

                                                              
Query: 307      acgccaccacgtccctcaagatggacacgtcgggctcgctgtccat 352
                |||| |||||||| ||||||||||||  ||| ||||| ||||||||
Sbjct: 29033488 acgcgaccacgtctctcaagatggacctgtccggctcactgtccat 29033533



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 193      ccgacgtcatcggccaggccg 213
                |||||||||||||||||||||
Sbjct: 33220995 ccgacgtcatcggccaggccg 33221015
to top
>dbj|AP003378.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0047E11
          Length = 148109

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 44/46 (95%)
 Strand = Plus / Plus

                                                           
Query: 58    tgatcatctccatctaccagccgtcgcacctggcgagcctcatccc 103
             |||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 83876 tgatcatctccatctaccagccgtcgcacctggccagcctgatccc 83921



 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 50/55 (90%)
 Strand = Plus / Plus

                                                                    
Query: 49    tgcggaacgtgatcatctccatctaccagccgtcgcacctggcgagcctcatccc 103
             |||| ||| ||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct: 77555 tgcgaaacatgatcatctccatctaccagccgtctcacctggctagcctgatccc 77609



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 41/44 (93%)
 Strand = Plus / Plus

                                                         
Query: 48    atgcggaacgtgatcatctccatctaccagccgtcgcacctggc 91
             ||||| ||| ||||| ||||||||||||||||||||||||||||
Sbjct: 61906 atgcgaaacatgatcctctccatctaccagccgtcgcacctggc 61949



 Score = 44.1 bits (22), Expect = 0.41
 Identities = 46/54 (85%)
 Strand = Plus / Plus

                                                                   
Query: 154   aggagatcaccttctccgacgtctccatcaggctcttcaccgacgtcatcggcc 207
             |||||||||||||||||||  ||||  |||| |||  ||||||||| |||||||
Sbjct: 83972 aggagatcaccttctccgatctctctctcagcctcgccaccgacgtgatcggcc 84025



 Score = 44.1 bits (22), Expect = 0.41
 Identities = 40/46 (86%)
 Strand = Plus / Plus

                                                           
Query: 307   acgccaccacgtccctcaagatggacacgtcgggctcgctgtccat 352
             |||| |||||||| ||||||||||||  ||| ||||| ||||||||
Sbjct: 77846 acgcgaccacgtctctcaagatggacctgtccggctcactgtccat 77891
to top
>dbj|AP003254.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0454A11
          Length = 152240

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 44/46 (95%)
 Strand = Plus / Plus

                                                            
Query: 58     tgatcatctccatctaccagccgtcgcacctggcgagcctcatccc 103
              |||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 152141 tgatcatctccatctaccagccgtcgcacctggccagcctgatccc 152186



 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 50/55 (90%)
 Strand = Plus / Plus

                                                                     
Query: 49     tgcggaacgtgatcatctccatctaccagccgtcgcacctggcgagcctcatccc 103
              |||| ||| ||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct: 145820 tgcgaaacatgatcatctccatctaccagccgtctcacctggctagcctgatccc 145874



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 41/44 (93%)
 Strand = Plus / Plus

                                                          
Query: 48     atgcggaacgtgatcatctccatctaccagccgtcgcacctggc 91
              ||||| ||| ||||| ||||||||||||||||||||||||||||
Sbjct: 130171 atgcgaaacatgatcctctccatctaccagccgtcgcacctggc 130214



 Score = 44.1 bits (22), Expect = 0.41
 Identities = 40/46 (86%)
 Strand = Plus / Plus

                                                            
Query: 307    acgccaccacgtccctcaagatggacacgtcgggctcgctgtccat 352
              |||| |||||||| ||||||||||||  ||| ||||| ||||||||
Sbjct: 146111 acgcgaccacgtctctcaagatggacctgtccggctcactgtccat 146156
to top
>ref|NM_192210.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1626

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 50/55 (90%)
 Strand = Plus / Plus

                                                                  
Query: 49  tgcggaacgtgatcatctccatctaccagccgtcgcacctggcgagcctcatccc 103
           |||| ||| ||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct: 401 tgcgaaacatgatcatctccatctaccagccgtctcacctggctagcctgatccc 455



 Score = 44.1 bits (22), Expect = 0.41
 Identities = 40/46 (86%)
 Strand = Plus / Plus

                                                         
Query: 307 acgccaccacgtccctcaagatggacacgtcgggctcgctgtccat 352
           |||| |||||||| ||||||||||||  ||| ||||| ||||||||
Sbjct: 692 acgcgaccacgtctctcaagatggacctgtccggctcactgtccat 737
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 40/42 (95%)
 Strand = Plus / Minus

                                                          
Query: 191      caccgacgtcatcggccaggccgccttcggcgtcgacttcgg 232
                ||||||||||||||||||||| || |||||||||||||||||
Sbjct: 21409475 caccgacgtcatcggccaggcggcgttcggcgtcgacttcgg 21409434



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                             
Query: 59       gatcatctccatctaccagccgtcgcacctggcgagcctcatccc 103
                |||||||||  | ||||||||||||||||| ||  ||||||||||
Sbjct: 21409613 gatcatctcgctgtaccagccgtcgcacctcgccggcctcatccc 21409569
to top
>dbj|AP005456.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0513E02
          Length = 141477

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 40/42 (95%)
 Strand = Plus / Minus

                                                       
Query: 191   caccgacgtcatcggccaggccgccttcggcgtcgacttcgg 232
             ||||||||||||||||||||| || |||||||||||||||||
Sbjct: 43975 caccgacgtcatcggccaggcggcgttcggcgtcgacttcgg 43934



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                          
Query: 59    gatcatctccatctaccagccgtcgcacctggcgagcctcatccc 103
             |||||||||  | ||||||||||||||||| ||  ||||||||||
Sbjct: 44113 gatcatctcgctgtaccagccgtcgcacctcgccggcctcatccc 44069
to top
>ref|NM_192207.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1695

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 41/44 (93%)
 Strand = Plus / Plus

                                                       
Query: 48  atgcggaacgtgatcatctccatctaccagccgtcgcacctggc 91
           ||||| ||| ||||| ||||||||||||||||||||||||||||
Sbjct: 400 atgcgaaacatgatcctctccatctaccagccgtcgcacctggc 443
to top
>dbj|AK067688.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013117E18, full
           insert sequence
          Length = 1937

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 41/44 (93%)
 Strand = Plus / Plus

                                                       
Query: 48  atgcggaacgtgatcatctccatctaccagccgtcgcacctggc 91
           ||||| ||| ||||| ||||||||||||||||||||||||||||
Sbjct: 569 atgcgaaacatgatcctctccatctaccagccgtcgcacctggc 612
to top
>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 238     ccaaggacgccgacgacgccga 259
               ||||||||||||||||||||||
Sbjct: 1990841 ccaaggacgccgacgacgccga 1990820
to top
>gb|AC002472.8| Homo sapiens Chromosome 22q11.2 PAC Clone p_n5 In BCRL2-GGT Region,
             complete sequence
          Length = 147086

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 87    ctggcgagcctcatcccggcgatccagcca 116
             ||||| ||||||||| ||||||||||||||
Sbjct: 22310 ctggccagcctcatctcggcgatccagcca 22339
to top
>gb|AC002470.17| Homo sapiens Chromosome 22q11.2 BAC Clone b135h6 In BCRL2-GGT Region,
              complete sequence
          Length = 235395

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                            
Query: 87     ctggcgagcctcatcccggcgatccagcca 116
              ||||| ||||||||| ||||||||||||||
Sbjct: 213815 ctggccagcctcatctcggcgatccagcca 213844
to top
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 203    cggccaggccgccttcggcgtc 224
              ||||||||||||||||||||||
Sbjct: 554980 cggccaggccgccttcggcgtc 554959
to top
>ref|NM_191518.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2571

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 193 ccgacgtcatcggccaggccg 213
           |||||||||||||||||||||
Sbjct: 86  ccgacgtcatcggccaggccg 106
to top
>ref|XM_361521.1| Magnaporthe grisea 70-15 hypothetical protein (MG03995.4) partial
            mRNA
          Length = 1779

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 189  ttcaccgacgtcatcggccag 209
            |||||||||||||||||||||
Sbjct: 1273 ttcaccgacgtcatcggccag 1293
to top
>ref|XM_958316.1| Neurospora crassa OR74A hypothetical protein (NCU08439.1) partial
            mRNA
          Length = 4062

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 159  atcaccttctccgacgtctcc 179
            |||||||||||||||||||||
Sbjct: 3325 atcaccttctccgacgtctcc 3345
to top
>ref|XM_329484.1| Neurospora crassa OR74A hypothetical protein (NCU08439.1) partial
            mRNA
          Length = 4062

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 159  atcaccttctccgacgtctcc 179
            |||||||||||||||||||||
Sbjct: 3325 atcaccttctccgacgtctcc 3345
to top
>emb|AL391005.9| Human DNA sequence from clone RP11-288A5 on chromosome 10 Contains a
              forkhead box I1 (FOXI1) pseudogene and a CpG island,
              complete sequence
          Length = 163778

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 386    gccgctgcggaagctgacgct 406
              |||||||||||||||||||||
Sbjct: 160184 gccgctgcggaagctgacgct 160204
to top
>emb|BX284762.1|NCB13B3 Neurospora crassa DNA linkage group II BAC contig B13B3
          Length = 82584

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 159   atcaccttctccgacgtctcc 179
             |||||||||||||||||||||
Sbjct: 33317 atcaccttctccgacgtctcc 33337
to top
>gb|BC109664.1| Bos taurus cDNA clone MGC:134152 IMAGE:8054240, complete cds
          Length = 1619

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 169  ccgacgtctccatcaggctct 189
            |||||||||||||||||||||
Sbjct: 1204 ccgacgtctccatcaggctct 1224
to top
>ref|NM_001015558.1| Bos taurus thioredoxin-related transmembrane protein 2 (TMX2), mRNA
          Length = 1488

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 169  ccgacgtctccatcaggctct 189
            |||||||||||||||||||||
Sbjct: 1094 ccgacgtctccatcaggctct 1114
to top
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 164    cttctccgacgtctccatcag 184
              |||||||||||||||||||||
Sbjct: 950399 cttctccgacgtctccatcag 950419
to top
>dbj|AP003406.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1070A12
          Length = 148449

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 193   ccgacgtcatcggccaggccg 213
             |||||||||||||||||||||
Sbjct: 14242 ccgacgtcatcggccaggccg 14262
to top
>gb|BT021083.1| Bos taurus thioredoxin-related transmembrane protein 2 (TMX2), mRNA,
            complete cds
          Length = 1488

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 169  ccgacgtctccatcaggctct 189
            |||||||||||||||||||||
Sbjct: 1094 ccgacgtctccatcaggctct 1114
to top
>gb|M90412.1|STMHRDC Streptomyces aureofaciens principal sigma- like factor (hrdC) gene,
           complete cds
          Length = 1965

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 238 ccaaggacgccgacgacgccgagaa 262
           ||||||||| |||||||||||||||
Sbjct: 631 ccaaggacggcgacgacgccgagaa 655
to top
>ref|XM_474851.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 945

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 244 acgccgacgacgccgagaag 263
           ||||||||||||||||||||
Sbjct: 47  acgccgacgacgccgagaag 66
to top
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 200     catcggccaggccgccttcg 219
               ||||||||||||||||||||
Sbjct: 1012774 catcggccaggccgccttcg 1012755
to top
>gb|AY657306.1| Synthetic construct Peudomonas aeruginosa clone FLH043325.01F
           PA3962 gene, partial cds
          Length = 417

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 212 cgccttcggcgtcgacttcg 231
           ||||||||||||||||||||
Sbjct: 180 cgccttcggcgtcgacttcg 199
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 227    cttcgggctcaccaaggacg 246
              ||||||||||||||||||||
Sbjct: 705806 cttcgggctcaccaaggacg 705787
to top
>ref|XM_501205.1| Yarrowia lipolytica CLIB122, YALI0B22066g predicted mRNA
          Length = 2751

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 241 aggacgccgacgacgccgag 260
           ||||||||||||||||||||
Sbjct: 176 aggacgccgacgacgccgag 195
to top
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 236     caccaaggacgccgacgacg 255
               ||||||||||||||||||||
Sbjct: 2477530 caccaaggacgccgacgacg 2477549
to top
>emb|AJ633545.1| Myxococcus xanthus groEL gene for chaperonin GroEL
          Length = 1644

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 375  gcgctccagaagccgctgcggaag 398
            ||||||||| ||||||||||||||
Sbjct: 1333 gcgctccaggagccgctgcggaag 1356
to top
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 212     cgccttcggcgtcgacttcg 231
               ||||||||||||||||||||
Sbjct: 6187680 cgccttcggcgtcgacttcg 6187699
to top
>emb|AJ620477.1| Angiococcus disciformis partial ORF16, ORF15, ORF14, ORF13, ORF12,
             ORF11, ORF10, ORF9, ORF8, ORF7, ORF6, ORF5, ORF4, ORF3,
             tubA gene, ORF2, tubZ gene, ORF1, tubB gene, tubC gene,
             tubD gene, tubE gene, tubF gene, ORF17, ORF18, ORF19,
             ORF20, tubG gene, ORF21, ORF22, ORF23 and ORF24, strain An
             d48
          Length = 82868

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 375   gcgctccagaagccgctgcggaag 398
             ||||||||| ||||||||||||||
Sbjct: 10861 gcgctccaggagccgctgcggaag 10838
to top
>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome
          Length = 2932766

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 374     ggcgctccagaagccgctgc 393
               ||||||||||||||||||||
Sbjct: 2577262 ggcgctccagaagccgctgc 2577243
to top
>dbj|AB228618.1| Aspergillus oryzae cDNA, contig sequence: AoEST5491
          Length = 467

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 281 ccgcgacttcatccagaagcacct 304
           ||||||||||||||| ||||||||
Sbjct: 84  ccgcgacttcatccaaaagcacct 107
to top
>dbj|AP007159.1| Aspergillus oryzae RIB40 genomic DNA, SC026
          Length = 2324132

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 281     ccgcgacttcatccagaagcacct 304
               ||||||||||||||| ||||||||
Sbjct: 1703441 ccgcgacttcatccaaaagcacct 1703418
to top
>ref|XM_680828.1| PREDICTED: Danio rerio similar to syntaxin binding protein 1
           (LOC557717), mRNA
          Length = 1920

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 287 cttcatccagaagcacctct 306
           ||||||||||||||||||||
Sbjct: 850 cttcatccagaagcacctct 831
to top
>ref|XM_679277.1| PREDICTED: Danio rerio similar to syntaxin binding protein 1
           (LOC556462), mRNA
          Length = 1998

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 287 cttcatccagaagcacctct 306
           ||||||||||||||||||||
Sbjct: 928 cttcatccagaagcacctct 909
to top
>emb|BX470198.7| Zebrafish DNA sequence from clone DKEY-18G6 in linkage group 5,
             complete sequence
          Length = 217036

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 287   cttcatccagaagcacctct 306
             ||||||||||||||||||||
Sbjct: 69893 cttcatccagaagcacctct 69874
to top
>emb|BX470066.7| Zebrafish DNA sequence from clone RP71-10D23 in linkage group 5, complete
              sequence
          Length = 178499

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 287    cttcatccagaagcacctct 306
              ||||||||||||||||||||
Sbjct: 132394 cttcatccagaagcacctct 132413
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 244     acgccgacgacgccgagaag 263
               ||||||||||||||||||||
Sbjct: 7212550 acgccgacgacgccgagaag 7212569
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3,
              complete sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 227    cttcgggctcaccaaggacg 246
              ||||||||||||||||||||
Sbjct: 705804 cttcgggctcaccaaggacg 705785
to top
>gb|AE004814.1| Pseudomonas aeruginosa PAO1, section 375 of 529 of the complete
            genome
          Length = 10042

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 212  cgccttcggcgtcgacttcg 231
            ||||||||||||||||||||
Sbjct: 4089 cgccttcggcgtcgacttcg 4108
to top
>gb|AE004583.1| Pseudomonas aeruginosa PAO1, section 144 of 529 of the complete
            genome
          Length = 10186

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 200  catcggccaggccgccttcg 219
            ||||||||||||||||||||
Sbjct: 1646 catcggccaggccgccttcg 1627
to top
>gb|AC134237.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
            OSJNBa0090O10, complete sequence
          Length = 162132

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 227  cttcgggctcaccaaggacg 246
            ||||||||||||||||||||
Sbjct: 1351 cttcgggctcaccaaggacg 1332
to top
>gb|AC121490.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBb0005F16, complete sequence
          Length = 160053

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 227   cttcgggctcaccaaggacg 246
             ||||||||||||||||||||
Sbjct: 91687 cttcgggctcaccaaggacg 91668
to top
>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome
          Length = 3147090

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 148     ccggcgaggagatcaccttc 167
               ||||||||||||||||||||
Sbjct: 3044311 ccggcgaggagatcaccttc 3044292
to top
>emb|AL732333.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0613A10, complete
            sequence
          Length = 77572

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 91   cgagcctcatcccggcgatc 110
            ||||||||||||||||||||
Sbjct: 3206 cgagcctcatcccggcgatc 3225
to top
>emb|AL606994.3|OSJN00114 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0035O13,
             complete sequence
          Length = 143298

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 244   acgccgacgacgccgagaag 263
             ||||||||||||||||||||
Sbjct: 76287 acgccgacgacgccgagaag 76306
to top
>gb|AY781344.1| Oryza sativa (japonica cultivar-group) putative cysteine protease
           mRNA, complete cds
          Length = 1279

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 244 acgccgacgacgccgagaag 263
           ||||||||||||||||||||
Sbjct: 266 acgccgacgacgccgagaag 285
to top
>emb|CR382128.1| Yarrowia lipolytica chromosome B of strain CLIB122 of Yarrowia lipolytica
          Length = 3066374

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 241     aggacgccgacgacgccgag 260
               ||||||||||||||||||||
Sbjct: 2887247 aggacgccgacgacgccgag 2887228


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,795,254
Number of Sequences: 3902068
Number of extensions: 2795254
Number of successful extensions: 53278
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 52186
Number of HSP's gapped (non-prelim): 1092
length of query: 479
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 457
effective length of database: 17,147,199,772
effective search space: 7836270295804
effective search space used: 7836270295804
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top