ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast52g09 |
|---|---|
| Clone Library Name | barley_pub |
>YSPK_CAEEL (Q19425) Hypothetical protein F13H10.3 in chromosome IV| Length = 615 Score = 34.7 bits (78), Expect = 0.098 Identities = 15/45 (33%), Positives = 27/45 (60%) Frame = +1 Query: 244 IITAVIGSGVLSLAWAIAQLGWAAGPAIMLLSALVIYYTSTLLAE 378 I ++G+ +L++ WA+ Q G G IML A + +YT+ ++ E Sbjct: 172 IWNTMMGTSLLAMPWALQQAGLVLGIIIMLSMAAICFYTAYIVIE 216
>S36A1_HUMAN (Q7Z2H8) Proton-coupled amino acid transporter 1 (Proton/amino acid| transporter 1) (Solute carrier family 36 member 1) Length = 476 Score = 33.9 bits (76), Expect = 0.17 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 5/84 (5%) Frame = +1 Query: 145 EVSVEAGNGRESDWLDDDGRPRRSG----TVWTASA-HIITAVIGSGVLSLAWAIAQLGW 309 +VS E + L G +R G T W + H++ IG+G+L L A+ G Sbjct: 18 DVSPEESPSEGLNNLSSPGSYQRFGQSNSTTWFQTLIHLLKGNIGTGLLGLPLAVKNAGI 77 Query: 310 AAGPAIMLLSALVIYYTSTLLAEC 381 GP +L+ +V + +L +C Sbjct: 78 VMGPISLLIIGIVAVHCMGILVKC 101
>S36A1_RAT (Q924A5) Proton-coupled amino acid transporter 1 (Proton/amino acid| transporter 1) (Solute carrier family 36 member 1) (Lysosomal amino acid transporter 1) (LYAAT-1) (Neutral amino acid/proton symporter) Length = 475 Score = 32.0 bits (71), Expect = 0.64 Identities = 14/47 (29%), Positives = 25/47 (53%) Frame = +1 Query: 241 HIITAVIGSGVLSLAWAIAQLGWAAGPAIMLLSALVIYYTSTLLAEC 381 H++ IG+G+L L A+ G GP +L+ +V + +L +C Sbjct: 54 HLLKGNIGTGLLGLPLAVKNAGLLLGPLSLLVIGIVAVHCMGILVKC 100
>S36A1_MOUSE (Q8K4D3) Proton-coupled amino acid transporter 1 (Proton/amino acid| transporter 1) (Solute carrier family 36 member 1) Length = 475 Score = 32.0 bits (71), Expect = 0.64 Identities = 14/47 (29%), Positives = 25/47 (53%) Frame = +1 Query: 241 HIITAVIGSGVLSLAWAIAQLGWAAGPAIMLLSALVIYYTSTLLAEC 381 H++ IG+G+L L A+ G GP +L+ +V + +L +C Sbjct: 54 HLLKGNIGTGLLGLPLAVKNAGLLLGPLSLLVIGIVAVHCMGILVKC 100
>UNC47_CAEEL (P34579) Vesicular GABA transporter (Uncoordinated protein 47)| (Protein unc-47) Length = 486 Score = 31.2 bits (69), Expect = 1.1 Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 14/116 (12%) Frame = +1 Query: 88 PMEKKQASYGKSAA------RMAPMEVSVEAGNGRESDW-----LDDDGRPRRSGTVWTA 234 P + Q G+S + R+ P++ SV + ++ D DDG S + Sbjct: 33 PSYQNQPQTGESGSNPPPHDRLEPIQESVVSEQPQKDDINKQEEAKDDGHGEASEPISAL 92 Query: 235 SA--HIITAVIGSGVLSLAWAIAQLGWAAGPAIMLLSALVIYYTSTLLAEC-YRSG 393 A ++ A+ G ++ L A+ GW + A M+ A V Y+T LL EC Y +G Sbjct: 93 QAAWNVTNAIQGMFIVGLPIAVKVGGWWSIGA-MVGVAYVCYWTGVLLIECLYENG 147
>PCBB_PROMM (Q7V6U4) Divinyl chlorophyll a/b light-harvesting protein pcbB| Length = 350 Score = 31.2 bits (69), Expect = 1.1 Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 7/62 (11%) Frame = +1 Query: 214 SGTVW---TASAHIITAVIGSGVLS----LAWAIAQLGWAAGPAIMLLSALVIYYTSTLL 372 SG +W T A T G G+LS L+WA+A +GW A A ++ Y T Sbjct: 215 SGGLWHIVTKQAGEYTTFKGKGILSAEAQLSWALAGVGWMALVAAFWCASNTTIYPDTFF 274 Query: 373 AE 378 E Sbjct: 275 GE 276
>NU4M_ARTSF (Q37711) NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3) (NADH| dehydrogenase subunit 4) Length = 386 Score = 30.4 bits (67), Expect = 1.9 Identities = 20/57 (35%), Positives = 28/57 (49%) Frame = +1 Query: 223 VWTASAHIITAVIGSGVLSLAWAIAQLGWAAGPAIMLLSALVIYYTSTLLAECYRSG 393 +W AH+ V GS V LA + +LG G + L+ L IY +TL+ C G Sbjct: 152 IWLPKAHVEAPVTGSMV--LAAILLKLG---GYGLYLVQVLNIYSETTLMGVCLMGG 203
>MUTL_XANCP (Q8P8E4) DNA mismatch repair protein mutL| Length = 624 Score = 30.4 bits (67), Expect = 1.9 Identities = 19/39 (48%), Positives = 23/39 (58%) Frame = +1 Query: 187 LDDDGRPRRSGTVWTASAHIITAVIGSGVLSLAWAIAQL 303 L DDG+P SGT A+AH SGV L +A+AQL Sbjct: 409 LRDDGQPVLSGTGLPATAH------DSGVPPLGYAVAQL 441
>TYRP_SHIFL (P0AAD5) Tyrosine-specific transport protein (Tyrosine permease)| Length = 403 Score = 29.3 bits (64), Expect = 4.1 Identities = 15/50 (30%), Positives = 30/50 (60%) Frame = +1 Query: 259 IGSGVLSLAWAIAQLGWAAGPAIMLLSALVIYYTSTLLAECYRSGDPETG 408 IG+G+L++ A A +G++ +++ ++ YT+ LL E Y+ +TG Sbjct: 17 IGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHVPADTG 66
>TYRP_ECOLI (P0AAD4) Tyrosine-specific transport protein (Tyrosine permease)| Length = 403 Score = 29.3 bits (64), Expect = 4.1 Identities = 15/50 (30%), Positives = 30/50 (60%) Frame = +1 Query: 259 IGSGVLSLAWAIAQLGWAAGPAIMLLSALVIYYTSTLLAECYRSGDPETG 408 IG+G+L++ A A +G++ +++ ++ YT+ LL E Y+ +TG Sbjct: 17 IGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHVPADTG 66
>MURB_ANASP (Q8YM74) UDP-N-acetylenolpyruvoylglucosamine reductase (EC| 1.1.1.158) (UDP-N-acetylmuramate dehydrogenase) Length = 331 Score = 29.3 bits (64), Expect = 4.1 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = +1 Query: 247 ITAVIGSGVLSLAWAIAQLGW 309 +T G + SLAW IA+LGW Sbjct: 123 VTIAAGESIPSLAWEIAKLGW 143
>YFMO_BACSU (O06473) Multidrug efflux protein yfmO| Length = 396 Score = 28.9 bits (63), Expect = 5.4 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 5/52 (9%) Frame = +1 Query: 211 RSGTVWTASAHIITAVIGSGVLSLAWAIAQL-----GWAAGPAIMLLSALVI 351 R G WT +I ++ +G+ + +IAQL GW G A+ + +AL + Sbjct: 79 RIGAKWTLILGLIFIIVFAGLGGSSSSIAQLVGYRGGWGLGNALFISTALAV 130
>ZITB_YERPS (Q66D85) Zinc transporter zitB| Length = 312 Score = 28.9 bits (63), Expect = 5.4 Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 3/70 (4%) Frame = +1 Query: 184 WLDDDGRPRRSGTVWTASAHIITAVIGS-GVLSLAWAIAQLGWAAGPAIM--LLSALVIY 354 W+ G ++ V A+ H+++ ++GS G + A I GW I+ L+S L++ Sbjct: 135 WILHKGEEEKNINVRAAALHVLSDLLGSVGAMIAAIVILTTGWTPIDPILSVLVSVLILR 194 Query: 355 YTSTLLAECY 384 LL E + Sbjct: 195 NAWRLLKESF 204
>ZITB_YERPE (Q8ZGY6) Zinc transporter zitB| Length = 312 Score = 28.9 bits (63), Expect = 5.4 Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 3/70 (4%) Frame = +1 Query: 184 WLDDDGRPRRSGTVWTASAHIITAVIGS-GVLSLAWAIAQLGWAAGPAIM--LLSALVIY 354 W+ G ++ V A+ H+++ ++GS G + A I GW I+ L+S L++ Sbjct: 135 WILHKGEEEKNINVRAAALHVLSDLLGSVGAMIAAIVILTTGWTPIDPILSVLVSVLILR 194 Query: 355 YTSTLLAECY 384 LL E + Sbjct: 195 SAWRLLKESF 204
>LAX4_MEDTR (Q8L884) Auxin transporter-like protein 4 (AUX1-like protein 4)| (MtLAX4) Length = 482 Score = 28.9 bits (63), Expect = 5.4 Identities = 14/56 (25%), Positives = 29/56 (51%) Frame = +1 Query: 217 GTVWTASAHIITAVIGSGVLSLAWAIAQLGWAAGPAIMLLSALVIYYTSTLLAECY 384 G+VW A + + +L+L ++ +QLG +G + L+ +T+ L++ Y Sbjct: 46 GSVWDAWFSCASNQVAQVLLTLPYSFSQLGMVSGIVFQIFYGLIGSWTAYLISVLY 101
>RDRP_IPNVS (P22174) RNA-directed RNA polymerase (EC 2.7.7.48) (RDRP) (Protein| VP1) Length = 844 Score = 28.5 bits (62), Expect = 7.1 Identities = 22/103 (21%), Positives = 45/103 (43%), Gaps = 2/103 (1%) Frame = +1 Query: 118 KSAARMAPMEVSVEAGNGRESDWLDDDGRPRRSGTVWTASAHII--TAVIGSGVLSLAWA 291 K A P + +W ++DG PR + T W A + + V+ S L + Sbjct: 405 KGEANCTPQHMQAMMYYRLTREWTNEDGSPRYNPT-WATFAMYVGPSMVVDSTCLLMNLQ 463 Query: 292 IAQLGWAAGPAIMLLSALVIYYTSTLLAECYRSGDPETGKRHY 420 + G +G A L+ ++ ++ ++AE +++G P + + Sbjct: 464 LKTTGQGSGNAFTFLNNHLM--STIVVAEWHKAGRPNPMSKEF 504
>AUX1_ARATH (Q96247) Auxin transporter protein 1 (Auxin influx carrier protein| 1) (Polar auxin transport inhibitor resistant protein 1) Length = 485 Score = 28.5 bits (62), Expect = 7.1 Identities = 14/56 (25%), Positives = 30/56 (53%) Frame = +1 Query: 217 GTVWTASAHIITAVIGSGVLSLAWAIAQLGWAAGPAIMLLSALVIYYTSTLLAECY 384 G+VW A + + +L+L ++ +QLG +G + + L+ +T+ L++ Y Sbjct: 46 GSVWDAWFSCASNQVAQVLLTLPYSFSQLGMLSGIVLQIFYGLLGSWTAYLISVLY 101
>UL51_PRVKA (Q85227) Protein UL51| Length = 236 Score = 28.5 bits (62), Expect = 7.1 Identities = 17/51 (33%), Positives = 23/51 (45%) Frame = +1 Query: 55 PAKHTPVAIVFPMEKKQASYGKSAARMAPMEVSVEAGNGRESDWLDDDGRP 207 P + P + P+ + A +AAR AP EAG E D +DD P Sbjct: 162 PVRAAPAGLGLPVPAQPAPRA-TAARPAPPPPPEEAGEDEEGDRPEDDAAP 211
>Y2029_AERPE (Q9YAB0) UPF0284 protein APE2029| Length = 387 Score = 28.5 bits (62), Expect = 7.1 Identities = 24/87 (27%), Positives = 33/87 (37%), Gaps = 15/87 (17%) Frame = +1 Query: 190 DDDGRPRRSGTVWT---------------ASAHIITAVIGSGVLSLAWAIAQLGWAAGPA 324 D G PRRS T W A ++ V G GV+++ + + G + Sbjct: 10 DAKGFPRRSSTFWRGYPVLGVSDVFAVSGALEVVLEGVAGKGVMAVVYGSTRTSTIPGIS 69 Query: 325 IMLLSALVIYYTSTLLAECYRSGDPET 405 I S YT TL E +G P T Sbjct: 70 IAGPSPEATLYTPTLDIEYLVAGRPLT 96
>NRAM_IAUSS (P03469) Neuraminidase (EC 3.2.1.18)| Length = 470 Score = 28.1 bits (61), Expect = 9.2 Identities = 10/30 (33%), Positives = 17/30 (56%) Frame = +1 Query: 199 GRPRRSGTVWTASAHIITAVIGSGVLSLAW 288 GRPR T+WT+ + I + S ++ +W Sbjct: 429 GRPREKTTIWTSGSSISFCGVNSDTVNWSW 458
>NRAM_IALEN (P31349) Neuraminidase (EC 3.2.1.18)| Length = 470 Score = 28.1 bits (61), Expect = 9.2 Identities = 10/30 (33%), Positives = 17/30 (56%) Frame = +1 Query: 199 GRPRRSGTVWTASAHIITAVIGSGVLSLAW 288 GRPR T+WT+ + I + S ++ +W Sbjct: 429 GRPREKTTIWTSGSSISFCGVNSDTVNWSW 458
>NRAM_IAKIE (P31348) Neuraminidase (EC 3.2.1.18)| Length = 470 Score = 28.1 bits (61), Expect = 9.2 Identities = 10/30 (33%), Positives = 17/30 (56%) Frame = +1 Query: 199 GRPRRSGTVWTASAHIITAVIGSGVLSLAW 288 GRPR T+WT+ + I + S ++ +W Sbjct: 429 GRPREKTTIWTSGSSISFCGVNSDTVNWSW 458
>MIP_CHICK (P28238) Lens fiber major intrinsic protein (Aquaporin-0) (AQP0)| (MIP26) (MP26) Length = 262 Score = 28.1 bits (61), Expect = 9.2 Identities = 20/59 (33%), Positives = 27/59 (45%) Frame = +1 Query: 202 RPRRSGTVWTASAHIITAVIGSGVLSLAWAIAQLGWAAGPAIMLLSALVIYYTSTLLAE 378 R RS + W A I+ +GS + +L A L WA GP +L SAL L + Sbjct: 2 RELRSSSFWRA---ILAEFLGSLLYTLLGLGASLRWAPGPHGVLGSALAFGLAQATLVQ 57
>AVT3_YEAST (P36062) Vacuolar amino acid transporter 3| Length = 692 Score = 28.1 bits (61), Expect = 9.2 Identities = 17/50 (34%), Positives = 25/50 (50%) Frame = +1 Query: 205 PRRSGTVWTASAHIITAVIGSGVLSLAWAIAQLGWAAGPAIMLLSALVIY 354 P +S TV A ++ + +G+GVL L A GW +L AL+ Y Sbjct: 294 PHKSSTV-KAVLLLLKSFVGTGVLFLPKAFHNGGWGFSALCLLSCALISY 342
>DLDH2_BACSU (P54533) Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (E3 component of| branched-chain alpha-keto acid dehydrogenase complex) (LPD-Val) (Dihydrolipoamide dehydrogenase) Length = 474 Score = 28.1 bits (61), Expect = 9.2 Identities = 21/80 (26%), Positives = 31/80 (38%), Gaps = 21/80 (26%) Frame = +1 Query: 115 GKSAARMAPMEVSVEAGNGRESDWL-------DDDGRPRRSGTVWTASAHIITA------ 255 G S P +SVE GNG E+D L RPR + ++T+ Sbjct: 118 GPSIFSPLPGTISVERGNGEENDMLIPKQVIIATGSRPRMLPGLEVDGKSVLTSDEALQM 177 Query: 256 --------VIGSGVLSLAWA 291 ++G GV+ + WA Sbjct: 178 EELPQSIIIVGGGVIGIEWA 197 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 42,882,646 Number of Sequences: 219361 Number of extensions: 655656 Number of successful extensions: 2527 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 2487 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2527 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2395157885 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
