ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast52g04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PHOP1_HUMAN (Q8TCT1) Phosphoethanolamine/phosphocholine phosphat... 48 1e-05
2PHOP2_XENTR (Q66KD6) Probable phosphatase phospho2 (EC 3.1.3.-) 47 2e-05
3PHOP1_MOUSE (Q8R2H9) Phosphoethanolamine/phosphocholine phosphat... 46 3e-05
4PHOP2_HUMAN (Q8TCD6) Pyridoxal phosphate phosphatase PHOSPHO2 (E... 40 0.002
5PHOP2_MOUSE (Q9D9M5) Pyridoxal phosphate phosphatase PHOSPHO2 (E... 40 0.003
6PHOP1_BRARE (Q6DBV4) Probable phosphatase phospho1 (EC 3.1.3.-) 40 0.003
7PHOP2_RAT (Q66HC4) Pyridoxal phosphate phosphatase PHOSPHO2 (EC ... 39 0.004
8PHOP1_CHICK (O73884) Phosphoethanolamine/phosphocholine phosphat... 34 0.12
9YB1E_SCHPO (P87179) Serine-rich protein C30B4.01c precursor 33 0.36
10GLMM_ZYMMO (Q5NNT4) Phosphoglucosamine mutase (EC 5.4.2.10) 32 0.61
11ITA6_CHICK (P26007) Integrin alpha-6 precursor (VLA-6) [Contains... 31 1.4
12ITA6_MOUSE (Q61739) Integrin alpha-6 precursor (VLA-6) (CD49f an... 30 3.0
13TKRA_ECOLI (P37666) 2-ketogluconate reductase (EC 1.1.1.215) (2K... 29 3.9
14TKRA_ECO57 (P58220) 2-ketogluconate reductase (EC 1.1.1.215) (2K... 29 3.9
15ITA6_HUMAN (P23229) Integrin alpha-6 precursor (VLA-6) (CD49f an... 29 3.9
16YHCW_BACSU (P54607) Hypothetical protein yhcW 29 5.2
17GLMM_SYNPX (Q7U9H6) Phosphoglucosamine mutase (EC 5.4.2.10) 28 8.8

>PHOP1_HUMAN (Q8TCT1) Phosphoethanolamine/phosphocholine phosphatase (EC|
           3.1.3.75)
          Length = 267

 Score = 47.8 bits (112), Expect = 1e-05
 Identities = 34/114 (29%), Positives = 57/114 (50%), Gaps = 8/114 (7%)
 Frame = +3

Query: 102 VVVFDFDKTIIDVDSDNWVVDGLGATELFDRLLPTMP---WNTLIDTVMGELHAQGKTLR 272
           ++ FDFD+TI+D +SD+ +V       L + L  T     +N  +  V   L  QG   R
Sbjct: 28  LLTFDFDETIVDENSDDSIVRAAPGQRLPESLRATYREGFYNEYMQRVFKYLGEQGVRPR 87

Query: 273 DVADVLRAAPIDPHVVAAIRAAYSLGC--DLRVLSDANRFFIEAVL---DHHGL 419
           D++ +  A P+ P +   ++     G   ++ ++SDAN F +E+ L    HH L
Sbjct: 88  DLSAIYEAIPLSPGMSDLLQFVAKQGACFEVILISDANTFGVESSLRAAGHHSL 141



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>PHOP2_XENTR (Q66KD6) Probable phosphatase phospho2 (EC 3.1.3.-)|
          Length = 238

 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 9/112 (8%)
 Frame = +3

Query: 102 VVVFDFDKTIIDVDSDNWVVDGLGATELFDRLLPTM---PWNTLIDTVMGELHAQGKTLR 272
           ++VFDFD TII+ +SD W+V  +   +L + L  +     W   +  V   L  QG    
Sbjct: 4   LLVFDFDHTIINDNSDTWIVQCVPGKKLPNGLQNSYEKGKWTEYMGRVFSYLGEQGIREE 63

Query: 273 DVADVLRAAPIDP------HVVAAIRAAYSLGCDLRVLSDANRFFIEAVLDH 410
           D+  ++ A P  P      H +   + ++    D  ++SD+N  FI+ +L H
Sbjct: 64  DMKRIMIAIPYTPGMTDLLHFIGQNKDSF----DCIIISDSNTIFIDWILTH 111



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>PHOP1_MOUSE (Q8R2H9) Phosphoethanolamine/phosphocholine phosphatase (EC|
           3.1.3.75)
          Length = 267

 Score = 46.2 bits (108), Expect = 3e-05
 Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 8/114 (7%)
 Frame = +3

Query: 102 VVVFDFDKTIIDVDSDNWVVDGLGATELFDRLLPTMP---WNTLIDTVMGELHAQGKTLR 272
           ++ FDFD+TI+D +SD+ +V      +L + L  T     +N  +  V   L  QG   R
Sbjct: 28  LLTFDFDETIVDENSDDSIVRAAPGQQLPESLRATYREGYYNEYMQRVFKYLGEQGVRPR 87

Query: 273 DVADVLRAAPIDPHVVAAIRAAYSLGC--DLRVLSDANRFFIEAVL---DHHGL 419
           D+  V    P+ P +   ++     G   ++ ++SDAN F +E+ L    HH L
Sbjct: 88  DLRAVYETIPLSPGMGDLLQFIAKQGSCFEVILISDANTFGVESALRAAGHHSL 141



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>PHOP2_HUMAN (Q8TCD6) Pyridoxal phosphate phosphatase PHOSPHO2 (EC 3.1.3.74)|
          Length = 241

 Score = 40.0 bits (92), Expect = 0.002
 Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 5/108 (4%)
 Frame = +3

Query: 99  VVVVFDFDKTIIDVDSDNWVVDGLGATELFDRLLPTMP---WNTLIDTVMGELHAQGKTL 269
           +++VFDFD TIID +SD W+V      +L   L  +     W   +  V   L  +G   
Sbjct: 3   ILLVFDFDNTIIDDNSDTWIVQCAPNKKLPIELRDSYRKGFWTEFMGRVFKYLGDKGVRE 62

Query: 270 RDVADVLRAAPIDPHVVAAIR--AAYSLGCDLRVLSDANRFFIEAVLD 407
            ++   + + P  P +V             D  ++SD+N  FI+ VL+
Sbjct: 63  HEMKRAVTSLPFTPGMVELFNFIRKNKDKFDCIIISDSNSVFIDWVLE 110



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>PHOP2_MOUSE (Q9D9M5) Pyridoxal phosphate phosphatase PHOSPHO2 (EC 3.1.3.74)|
          Length = 241

 Score = 39.7 bits (91), Expect = 0.003
 Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 6/109 (5%)
 Frame = +3

Query: 99  VVVVFDFDKTIIDVDSDNWVV----DGLGATELFDRLLPTMPWNTLIDTVMGELHAQGKT 266
           V++VFDFD TIID +SD W+V    D     EL D     + W   +  V   L  +G  
Sbjct: 3   VLLVFDFDNTIIDDNSDTWIVQCAPDKKLPIELQDSYQKGL-WTEFMGRVFKYLRDEGVK 61

Query: 267 LRDVADVLRAAPIDPHVVAAIR--AAYSLGCDLRVLSDANRFFIEAVLD 407
             ++   + + P    ++  +          D  ++SD+N  FI+ VL+
Sbjct: 62  ADELKRAVTSLPFTSGMIELLSFLRMNKDRFDCIIISDSNSIFIDWVLE 110



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>PHOP1_BRARE (Q6DBV4) Probable phosphatase phospho1 (EC 3.1.3.-)|
          Length = 279

 Score = 39.7 bits (91), Expect = 0.003
 Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 6/111 (5%)
 Frame = +3

Query: 102 VVVFDFDKTIIDVDSDNWVVDGLGATELFDRLLPTMP---WNTLIDTVMGELHAQGKT-- 266
           ++ FDFD+T++D  SD+ +V       L   L  T     +N  +  V+  L  QG T  
Sbjct: 37  LMFFDFDETLVDECSDDSMVSAAPGGVLPGWLKDTYRPGRYNEYMQRVLAYLSEQGVTPA 96

Query: 267 -LRDVADVLRAAPIDPHVVAAIRAAYSLGCDLRVLSDANRFFIEAVLDHHG 416
            +R   + L   P  P ++  + +  S   ++  +SDAN  FIE  L H G
Sbjct: 97  AIRATVEKLPPCPGIPALMHFLLSQPSRDFEVVCVSDANTVFIETWLQHMG 147



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>PHOP2_RAT (Q66HC4) Pyridoxal phosphate phosphatase PHOSPHO2 (EC 3.1.3.74)|
          Length = 241

 Score = 39.3 bits (90), Expect = 0.004
 Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 6/109 (5%)
 Frame = +3

Query: 99  VVVVFDFDKTIIDVDSDNWVV----DGLGATELFDRLLPTMPWNTLIDTVMGELHAQGKT 266
           V++VFDFD TIID +SD W++    D     EL D     + W   +  V   L  +G  
Sbjct: 3   VLLVFDFDNTIIDDNSDTWIIQCAPDKKLPIELQDSYQKGL-WTEFMGRVFKYLRDEGVK 61

Query: 267 LRDVADVLRAAPIDPHVVAAIR--AAYSLGCDLRVLSDANRFFIEAVLD 407
             ++   + + P    ++  +          D  ++SD+N  FI+ VL+
Sbjct: 62  EEELKRAVTSLPFTSGMIELLSFLRMNKDRFDCIIISDSNSIFIDWVLE 110



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>PHOP1_CHICK (O73884) Phosphoethanolamine/phosphocholine phosphatase (EC|
           3.1.3.75) (3X11A)
          Length = 268

 Score = 34.3 bits (77), Expect = 0.12
 Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 6/107 (5%)
 Frame = +3

Query: 102 VVVFDFDKTIIDVDSDNWVVDGLGATELFDRLLPTMP---WNTLIDTVMGELHAQGKTLR 272
           ++VFDFD TII+  SD+ +V       L + +  +     +N  +  V+  +  QG  + 
Sbjct: 28  LLVFDFDGTIINESSDDSIVRAAPGQALPEHIRQSFREGFYNEYMQRVLAYMGDQGVKMG 87

Query: 273 DVADVLRAAPID---PHVVAAIRAAYSLGCDLRVLSDANRFFIEAVL 404
           D   V    P+    P +   +   + L  ++ ++SDAN F IE  L
Sbjct: 88  DFKAVYENIPLSPGMPDLFQFLSKNHEL-FEIILISDANMFGIECKL 133



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>YB1E_SCHPO (P87179) Serine-rich protein C30B4.01c precursor|
          Length = 374

 Score = 32.7 bits (73), Expect = 0.36
 Identities = 21/81 (25%), Positives = 34/81 (41%)
 Frame = -3

Query: 325 AATTCGSMGAARSTSATSRRVLPCACSSPITVSMRVFHGMVGSRRSKSSVAPRPXXXXXX 146
           ++++  S  ++ S+S++S      + S PIT S    H    S  S SS + RP      
Sbjct: 181 SSSSSSSSSSSSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSSSSRPSSSSSF 240

Query: 145 XXXXXXXXXXSNTTTTPAIST 83
                     S  T TP+ S+
Sbjct: 241 ITTMSSSTFISTVTVTPSSSS 261



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>GLMM_ZYMMO (Q5NNT4) Phosphoglucosamine mutase (EC 5.4.2.10)|
          Length = 445

 Score = 32.0 bits (71), Expect = 0.61
 Identities = 32/91 (35%), Positives = 44/91 (48%), Gaps = 6/91 (6%)
 Frame = +3

Query: 96  GVVVVFDFDKTIIDVDSDNWVVDG-----LGATELFDRLLPTMPWNTLIDTVMGELHAQG 260
           G+ +  D D+ II VD    +VDG     L AT    R L  +  NT + TVM  L  + 
Sbjct: 237 GIALDGDADRVII-VDEKGEIVDGDQIMALIATSAQKRNL--LKGNTTVATVMSNLGLER 293

Query: 261 KTLRDVADVLRAAPIDPHVVAAIRA-AYSLG 350
              +    +LR    D HVV A+RA  Y++G
Sbjct: 294 YLSKLGIQLLRTQVGDRHVVEAMRAGGYTVG 324



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>ITA6_CHICK (P26007) Integrin alpha-6 precursor (VLA-6) [Contains: Integrin|
           alpha-6 heavy chain; Integrin alpha-6 light chain]
          Length = 1072

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +3

Query: 87  EMAGVVVVFDFDKTIIDVDSDNWVVDGLGATELFDR 194
           E  G+   F +D  ++D++SD W    +GA + FDR
Sbjct: 302 EGEGLASSFGYDVAVVDLNSDGWQDIVVGAPQYFDR 337



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>ITA6_MOUSE (Q61739) Integrin alpha-6 precursor (VLA-6) (CD49f antigen)|
           [Contains: Integrin alpha-6 heavy chain; Integrin
           alpha-6 light chain]
          Length = 1091

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +3

Query: 96  GVVVVFDFDKTIIDVDSDNWVVDGLGATELFDR 194
           G+   F +D  ++D+++D W    +GA + FDR
Sbjct: 311 GLASSFGYDVAVVDLNADGWQDIVIGAPQYFDR 343



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>TKRA_ECOLI (P37666) 2-ketogluconate reductase (EC 1.1.1.215) (2KR)|
           (2-ketoaldonate reductase)
          Length = 324

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 17/55 (30%), Positives = 31/55 (56%)
 Frame = +3

Query: 132 IDVDSDNWVVDGLGATELFDRLLPTMPWNTLIDTVMGELHAQGKTLRDVADVLRA 296
           I V  DN+ VD L A ++     PT+   T+ DT+M  + +  + + +VA+ ++A
Sbjct: 73  ISVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKA 127



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>TKRA_ECO57 (P58220) 2-ketogluconate reductase (EC 1.1.1.215) (2KR)|
           (2-ketoaldonate reductase)
          Length = 324

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 17/55 (30%), Positives = 31/55 (56%)
 Frame = +3

Query: 132 IDVDSDNWVVDGLGATELFDRLLPTMPWNTLIDTVMGELHAQGKTLRDVADVLRA 296
           I V  DN+ VD L A ++     PT+   T+ DT+M  + +  + + +VA+ ++A
Sbjct: 73  ISVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKA 127



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>ITA6_HUMAN (P23229) Integrin alpha-6 precursor (VLA-6) (CD49f antigen)|
           [Contains: Integrin alpha-6 heavy chain; Integrin
           alpha-6 light chain]
          Length = 1130

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +3

Query: 96  GVVVVFDFDKTIIDVDSDNWVVDGLGATELFDR 194
           G+   F +D  ++D++ D W    +GA + FDR
Sbjct: 350 GLASSFGYDVAVVDLNKDGWQDIVIGAPQYFDR 382



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>YHCW_BACSU (P54607) Hypothetical protein yhcW|
          Length = 220

 Score = 28.9 bits (63), Expect = 5.2
 Identities = 32/124 (25%), Positives = 51/124 (41%), Gaps = 19/124 (15%)
 Frame = +3

Query: 105 VVFDFDKTIIDVDSDNWVVDGLGATELFDR---LLPTMPWNTLIDTVMG-----ELHAQ- 257
           ++FDFD  I+D ++  + V      E+F+    +LP   W  +I T  G      L  Q 
Sbjct: 5   LIFDFDGLILDTETHEYEV----LQEIFEEHGSVLPLSVWGKVIGTAAGFRPFEYLEEQI 60

Query: 258 GKTLRD----------VADVLRAAPIDPHVVAAIRAAYSLGCDLRVLSDANRFFIEAVLD 407
           GK L             A  + +    P V A + AA  LG  + + S ++  ++   L 
Sbjct: 61  GKKLNHEELTQLRRERFAKRMESEKARPGVEAYLNAAKDLGLKIGLASSSDYKWVSGHLK 120

Query: 408 HHGL 419
             GL
Sbjct: 121 QIGL 124



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>GLMM_SYNPX (Q7U9H6) Phosphoglucosamine mutase (EC 5.4.2.10)|
          Length = 462

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 6/86 (6%)
 Frame = +3

Query: 96  GVVVVFDFD---KTIIDVDSDNWVVDGLGATELFDRLLP---TMPWNTLIDTVMGELHAQ 257
           G V+ F FD     ++ VD+   VVDG     L+  +L     +P + L+ TVM  L  +
Sbjct: 242 GAVMGFAFDGDADRMLAVDARGRVVDGDHVLYLWGSVLQDQKALPGDRLVATVMSNLGFE 301

Query: 258 GKTLRDVADVLRAAPIDPHVVAAIRA 335
               R   ++ R    D HV AA+ A
Sbjct: 302 RAWERRGGELERTPVGDQHVHAAMVA 327


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.312    0.123    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,401,665
Number of Sequences: 219361
Number of extensions: 401443
Number of successful extensions: 1191
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1187
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2286875994
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
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