ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast52g04 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 317 bits (160), Expect = 2e-83 Identities = 289/332 (87%) Strand = Plus / Minus Query: 88 agatggccggcgtcgtggtggtgttcgacttcgacaagaccatcatcgacgtcgacagcg 147 |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 30019640 agatggccgggatcgtggtggtgttcgacttcgacaagacgatcatcgacgtcgacagcg 30019581 Query: 148 acaactgggtcgtcgacggcctgggcgccaccgagctcttcgaccgcctgctgcccacca 207 ||||||||||||| ||||| || ||||| || ||| ||||| || ||||||||||||| Sbjct: 30019580 acaactgggtcgtggacgggctcggcgcgacggaggagttcgagcggctgctgcccacca 30019521 Query: 208 tgccgtggaacaccctcatcgacaccgttatgggggagctgcacgcgcagggcaagaccc 267 ||||||||||||||||||| |||||| | ||||| ||||| |||||| |||||| | | Sbjct: 30019520 tgccgtggaacaccctcatggacaccatgatgggcgagctccacgcgagcggcaagtcgc 30019461 Query: 268 tccgcgacgtcgccgacgtgctccgggccgcgcccatcgacccgcacgtcgtcgccgcca 327 || ||||||||| | ||||||| || | ||||| ||||||||| |||||||||||||| Sbjct: 30019460 tcgccgacgtcgcgggcgtgctcaggtcggcgccgctcgacccgcgcgtcgtcgccgcca 30019401 Query: 328 tcagggccgcctacagcctcggctgcgacctcagggtcctcagcgacgccaaccgcttct 387 ||| |||| |||| |||| |||||||||||| || |||||||||||||||||||||||| Sbjct: 30019400 tcaaggcctgctacggcctgggctgcgacctccggatcctcagcgacgccaaccgcttct 30019341 Query: 388 tcatcgaggccgtcctcgaccaccacggcctc 419 ||||||| || |||||||||||||||||||| Sbjct: 30019340 tcatcgacaccatcctcgaccaccacggcctc 30019309 Score = 65.9 bits (33), Expect = 1e-07 Identities = 51/57 (89%) Strand = Plus / Minus Query: 102 gtggtggtgttcgacttcgacaagaccatcatcgacgtcgacagcgacaactgggtc 158 |||||||||||||||||||||| |||||||||||| ||||||||| |||||||| Sbjct: 23581618 gtggtggtgttcgacttcgacaggaccatcatcgagtgggacagcgacgactgggtc 23581562 Score = 48.1 bits (24), Expect = 0.023 Identities = 42/48 (87%) Strand = Plus / Minus Query: 369 agcgacgccaaccgcttcttcatcgaggccgtcctcgaccaccacggc 416 |||||||||||| ||||||||||||| |||| || || ||||||||| Sbjct: 23581155 agcgacgccaacgccttcttcatcgagaccgtgctggagcaccacggc 23581108 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 91 tggccggcgtcgtggtggtgttcg 114 ||||||||| |||||||||||||| Sbjct: 17486879 tggccggcggcgtggtggtgttcg 17486856
>dbj|AP003292.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0690B02 Length = 153116 Score = 317 bits (160), Expect = 2e-83 Identities = 289/332 (87%) Strand = Plus / Minus Query: 88 agatggccggcgtcgtggtggtgttcgacttcgacaagaccatcatcgacgtcgacagcg 147 |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 15630 agatggccgggatcgtggtggtgttcgacttcgacaagacgatcatcgacgtcgacagcg 15571 Query: 148 acaactgggtcgtcgacggcctgggcgccaccgagctcttcgaccgcctgctgcccacca 207 ||||||||||||| ||||| || ||||| || ||| ||||| || ||||||||||||| Sbjct: 15570 acaactgggtcgtggacgggctcggcgcgacggaggagttcgagcggctgctgcccacca 15511 Query: 208 tgccgtggaacaccctcatcgacaccgttatgggggagctgcacgcgcagggcaagaccc 267 ||||||||||||||||||| |||||| | ||||| ||||| |||||| |||||| | | Sbjct: 15510 tgccgtggaacaccctcatggacaccatgatgggcgagctccacgcgagcggcaagtcgc 15451 Query: 268 tccgcgacgtcgccgacgtgctccgggccgcgcccatcgacccgcacgtcgtcgccgcca 327 || ||||||||| | ||||||| || | ||||| ||||||||| |||||||||||||| Sbjct: 15450 tcgccgacgtcgcgggcgtgctcaggtcggcgccgctcgacccgcgcgtcgtcgccgcca 15391 Query: 328 tcagggccgcctacagcctcggctgcgacctcagggtcctcagcgacgccaaccgcttct 387 ||| |||| |||| |||| |||||||||||| || |||||||||||||||||||||||| Sbjct: 15390 tcaaggcctgctacggcctgggctgcgacctccggatcctcagcgacgccaaccgcttct 15331 Query: 388 tcatcgaggccgtcctcgaccaccacggcctc 419 ||||||| || |||||||||||||||||||| Sbjct: 15330 tcatcgacaccatcctcgaccaccacggcctc 15299
>ref|NM_191798.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 825 Score = 313 bits (158), Expect = 3e-82 Identities = 287/330 (86%) Strand = Plus / Plus Query: 90 atggccggcgtcgtggtggtgttcgacttcgacaagaccatcatcgacgtcgacagcgac 149 |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 1 atggccgggatcgtggtggtgttcgacttcgacaagacgatcatcgacgtcgacagcgac 60 Query: 150 aactgggtcgtcgacggcctgggcgccaccgagctcttcgaccgcctgctgcccaccatg 209 ||||||||||| ||||| || ||||| || ||| ||||| || ||||||||||||||| Sbjct: 61 aactgggtcgtggacgggctcggcgcgacggaggagttcgagcggctgctgcccaccatg 120 Query: 210 ccgtggaacaccctcatcgacaccgttatgggggagctgcacgcgcagggcaagaccctc 269 ||||||||||||||||| |||||| | ||||| ||||| |||||| |||||| | ||| Sbjct: 121 ccgtggaacaccctcatggacaccatgatgggcgagctccacgcgagcggcaagtcgctc 180 Query: 270 cgcgacgtcgccgacgtgctccgggccgcgcccatcgacccgcacgtcgtcgccgccatc 329 ||||||||| | ||||||| || | ||||| ||||||||| |||||||||||||||| Sbjct: 181 gccgacgtcgcgggcgtgctcaggtcggcgccgctcgacccgcgcgtcgtcgccgccatc 240 Query: 330 agggccgcctacagcctcggctgcgacctcagggtcctcagcgacgccaaccgcttcttc 389 | |||| |||| |||| |||||||||||| || |||||||||||||||||||||||||| Sbjct: 241 aaggcctgctacggcctgggctgcgacctccggatcctcagcgacgccaaccgcttcttc 300 Query: 390 atcgaggccgtcctcgaccaccacggcctc 419 ||||| || |||||||||||||||||||| Sbjct: 301 atcgacaccatcctcgaccaccacggcctc 330
>dbj|AK061237.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-C03, full insert sequence Length = 1100 Score = 309 bits (156), Expect = 4e-81 Identities = 288/332 (86%) Strand = Plus / Plus Query: 88 agatggccggcgtcgtggtggtgttcgacttcgacaagaccatcatcgacgtcgacagcg 147 |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 83 agatggccgggatcgtggtggtgttcgacttcgacaagacgatcatcgacgtcgacagcg 142 Query: 148 acaactgggtcgtcgacggcctgggcgccaccgagctcttcgaccgcctgctgcccacca 207 ||||||||||||| ||||| || ||| | || ||| ||||| || ||||||||||||| Sbjct: 143 acaactgggtcgtggacgggctcggcacgacggaggagttcgagcggctgctgcccacca 202 Query: 208 tgccgtggaacaccctcatcgacaccgttatgggggagctgcacgcgcagggcaagaccc 267 ||||||||||||||||||| |||||| | ||||| ||||| |||||| |||||| | | Sbjct: 203 tgccgtggaacaccctcatggacaccatgatgggcgagctccacgcgagcggcaagtcgc 262 Query: 268 tccgcgacgtcgccgacgtgctccgggccgcgcccatcgacccgcacgtcgtcgccgcca 327 || ||||||||| | ||||||| || | ||||| ||||||||| |||||||||||||| Sbjct: 263 tcgccgacgtcgcgggcgtgctcaggtcggcgccgctcgacccgcgcgtcgtcgccgcca 322 Query: 328 tcagggccgcctacagcctcggctgcgacctcagggtcctcagcgacgccaaccgcttct 387 ||| |||| |||| |||| |||||||||||| || |||||||||||||||||||||||| Sbjct: 323 tcaaggcctgctacggcctgggctgcgacctccggatcctcagcgacgccaaccgcttct 382 Query: 388 tcatcgaggccgtcctcgaccaccacggcctc 419 ||||||| || |||||||||||||||||||| Sbjct: 383 tcatcgacaccatcctcgaccaccacggcctc 414
>gb|AY107750.1| Zea mays PCO107612 mRNA sequence Length = 1158 Score = 280 bits (141), Expect = 4e-72 Identities = 282/329 (85%) Strand = Plus / Plus Query: 90 atggccggcgtcgtggtggtgttcgacttcgacaagaccatcatcgacgtcgacagcgac 149 |||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 69 atggccggggtcgttgtggtgttcgacttcgacaagacgatcatcgacgtcgacagcgac 128 Query: 150 aactgggtcgtcgacggcctgggcgccaccgagctcttcgaccgcctgctgcccaccatg 209 ||||||||||| ||| |||| ||| |||||||| ||||| ||||| |||||||||||| Sbjct: 129 aactgggtcgtggacagcctcggcttcaccgagccgttcgagcgcctcctgcccaccatg 188 Query: 210 ccgtggaacaccctcatcgacaccgttatgggggagctgcacgcgcagggcaagaccctc 269 || |||||||| ||||| |||||| | |||||||||||||||||||| |||| |||||| Sbjct: 189 ccctggaacacgctcatggacaccatgatgggggagctgcacgcgcacggcaggaccctg 248 Query: 270 cgcgacgtcgccgacgtgctccgggccgcgcccatcgacccgcacgtcgtcgccgccatc 329 |||||||||||| | |||||| || |||||| ||| | || |||| |||||||||| Sbjct: 249 gacgacgtcgccgaggcgctccgtgcggcgcccgtcgtcgcgggcgtccccgccgccatc 308 Query: 330 agggccgcctacagcctcggctgcgacctcagggtcctcagcgacgccaaccgcttcttc 389 | |||||||||| |||||||||||||| | |||||||||||||||||| ||||||| Sbjct: 309 aaggccgcctacgcgctcggctgcgacctgcgcgtcctcagcgacgccaacgccttcttc 368 Query: 390 atcgaggccgtcctcgaccaccacggcct 418 ||||| ||||||| | ||||||||||| Sbjct: 369 atcgacaccgtcctggcgcaccacggcct 397
>ref|XM_464747.1| Oryza sativa (japonica cultivar-group), mRNA Length = 891 Score = 121 bits (61), Expect = 2e-24 Identities = 79/85 (92%) Strand = Plus / Plus Query: 96 ggcgtcgtggtggtgttcgacttcgacaagaccatcatcgacgtcgacagcgacaactgg 155 ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 25 ggcgtggtggtggtgttcgacttcgacaagaccatcatcgactgcgacagcgacaactgg 84 Query: 156 gtcgtcgacggcctgggcgccaccg 180 |||||||||| || |||||||||| Sbjct: 85 gtcgtcgacgcgctcggcgccaccg 109 Score = 85.7 bits (43), Expect = 1e-13 Identities = 67/75 (89%) Strand = Plus / Plus Query: 345 ctcggctgcgacctcagggtcctcagcgacgccaaccgcttcttcatcgaggccgtcctc 404 ||||| ||||| |||||||| ||||||||||||||| ||||||| ||| ||||||||| Sbjct: 274 ctcgggtgcgagctcagggtgctcagcgacgccaacgccttcttcgtcggcgccgtcctc 333 Query: 405 gaccaccacggcctc 419 ||||||||||||||| Sbjct: 334 gaccaccacggcctc 348
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 121 bits (61), Expect = 2e-24 Identities = 79/85 (92%) Strand = Plus / Plus Query: 96 ggcgtcgtggtggtgttcgacttcgacaagaccatcatcgacgtcgacagcgacaactgg 155 ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 7077879 ggcgtggtggtggtgttcgacttcgacaagaccatcatcgactgcgacagcgacaactgg 7077938 Query: 156 gtcgtcgacggcctgggcgccaccg 180 |||||||||| || |||||||||| Sbjct: 7077939 gtcgtcgacgcgctcggcgccaccg 7077963 Score = 85.7 bits (43), Expect = 1e-13 Identities = 67/75 (89%) Strand = Plus / Plus Query: 345 ctcggctgcgacctcagggtcctcagcgacgccaaccgcttcttcatcgaggccgtcctc 404 ||||| ||||| |||||||| ||||||||||||||| ||||||| ||| ||||||||| Sbjct: 7078217 ctcgggtgcgagctcagggtgctcagcgacgccaacgccttcttcgtcggcgccgtcctc 7078276 Query: 405 gaccaccacggcctc 419 ||||||||||||||| Sbjct: 7078277 gaccaccacggcctc 7078291
>dbj|AP005003.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0495C02 Length = 151467 Score = 121 bits (61), Expect = 2e-24 Identities = 79/85 (92%) Strand = Plus / Plus Query: 96 ggcgtcgtggtggtgttcgacttcgacaagaccatcatcgacgtcgacagcgacaactgg 155 ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 81298 ggcgtggtggtggtgttcgacttcgacaagaccatcatcgactgcgacagcgacaactgg 81357 Query: 156 gtcgtcgacggcctgggcgccaccg 180 |||||||||| || |||||||||| Sbjct: 81358 gtcgtcgacgcgctcggcgccaccg 81382 Score = 85.7 bits (43), Expect = 1e-13 Identities = 67/75 (89%) Strand = Plus / Plus Query: 345 ctcggctgcgacctcagggtcctcagcgacgccaaccgcttcttcatcgaggccgtcctc 404 ||||| ||||| |||||||| ||||||||||||||| ||||||| ||| ||||||||| Sbjct: 81636 ctcgggtgcgagctcagggtgctcagcgacgccaacgccttcttcgtcggcgccgtcctc 81695 Query: 405 gaccaccacggcctc 419 ||||||||||||||| Sbjct: 81696 gaccaccacggcctc 81710
>ref|XM_463399.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 855 Score = 65.9 bits (33), Expect = 1e-07 Identities = 51/57 (89%) Strand = Plus / Plus Query: 102 gtggtggtgttcgacttcgacaagaccatcatcgacgtcgacagcgacaactgggtc 158 |||||||||||||||||||||| |||||||||||| ||||||||| |||||||| Sbjct: 58 gtggtggtgttcgacttcgacaggaccatcatcgagtgggacagcgacgactgggtc 114 Score = 48.1 bits (24), Expect = 0.023 Identities = 42/48 (87%) Strand = Plus / Plus Query: 369 agcgacgccaaccgcttcttcatcgaggccgtcctcgaccaccacggc 416 |||||||||||| ||||||||||||| |||| || || ||||||||| Sbjct: 325 agcgacgccaacgccttcttcatcgagaccgtgctggagcaccacggc 372
>dbj|AP003278.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0518F01 Length = 154541 Score = 65.9 bits (33), Expect = 1e-07 Identities = 51/57 (89%) Strand = Plus / Minus Query: 102 gtggtggtgttcgacttcgacaagaccatcatcgacgtcgacagcgacaactgggtc 158 |||||||||||||||||||||| |||||||||||| ||||||||| |||||||| Sbjct: 44317 gtggtggtgttcgacttcgacaggaccatcatcgagtgggacagcgacgactgggtc 44261 Score = 48.1 bits (24), Expect = 0.023 Identities = 42/48 (87%) Strand = Plus / Minus Query: 369 agcgacgccaaccgcttcttcatcgaggccgtcctcgaccaccacggc 416 |||||||||||| ||||||||||||| |||| || || ||||||||| Sbjct: 43854 agcgacgccaacgccttcttcatcgagaccgtgctggagcaccacggc 43807
>dbj|AP003504.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0025A05 Length = 154298 Score = 65.9 bits (33), Expect = 1e-07 Identities = 51/57 (89%) Strand = Plus / Minus Query: 102 gtggtggtgttcgacttcgacaagaccatcatcgacgtcgacagcgacaactgggtc 158 |||||||||||||||||||||| |||||||||||| ||||||||| |||||||| Sbjct: 144923 gtggtggtgttcgacttcgacaggaccatcatcgagtgggacagcgacgactgggtc 144867 Score = 48.1 bits (24), Expect = 0.023 Identities = 42/48 (87%) Strand = Plus / Minus Query: 369 agcgacgccaaccgcttcttcatcgaggccgtcctcgaccaccacggc 416 |||||||||||| ||||||||||||| |||| || || ||||||||| Sbjct: 144460 agcgacgccaacgccttcttcatcgagaccgtgctggagcaccacggc 144413
>ref|NM_105959.2| Arabidopsis thaliana phosphoric monoester hydrolase AT1G73010 mRNA, complete cds Length = 1172 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Plus Query: 111 ttcgacttcgacaagaccatcatcgacgtcgacagcgacaactgggt 157 ||||||||||||||||||||||||||||| || ||||| || ||||| Sbjct: 128 ttcgacttcgacaagaccatcatcgacgttgatagcgataattgggt 174
>gb|BT015567.1| Arabidopsis thaliana At1g73010 mRNA sequence Length = 885 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Plus Query: 111 ttcgacttcgacaagaccatcatcgacgtcgacagcgacaactgggt 157 ||||||||||||||||||||||||||||| || ||||| || ||||| Sbjct: 49 ttcgacttcgacaagaccatcatcgacgttgatagcgataattgggt 95
>emb|BX817736.1|CNS0ACNR Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL39ZG03 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1117 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Plus Query: 111 ttcgacttcgacaagaccatcatcgacgtcgacagcgacaactgggt 157 ||||||||||||||||||||||||||||| || ||||| || ||||| Sbjct: 114 ttcgacttcgacaagaccatcatcgacgttgatagcgataattgggt 160
>gb|AY085944.1| Arabidopsis thaliana clone 19976 mRNA, complete sequence Length = 990 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Plus Query: 111 ttcgacttcgacaagaccatcatcgacgtcgacagcgacaactgggt 157 ||||||||||||||||||||||||||||| || ||||| || ||||| Sbjct: 123 ttcgacttcgacaagaccatcatcgacgttgatagcgataattgggt 169
>dbj|AK176548.1| Arabidopsis thaliana mRNA, complete cds, clone: RAFL25-06-N10 Length = 1092 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Plus Query: 111 ttcgacttcgacaagaccatcatcgacgtcgacagcgacaactgggt 157 ||||||||||||||||||||||||||||| || ||||| || ||||| Sbjct: 122 ttcgacttcgacaagaccatcatcgacgttgatagcgataattgggt 168
>gb|AC008017.2|AC008017 Arabidopsis thaliana chromosome I BAC F3N23 genomic sequence, complete sequence Length = 116944 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 111 ttcgacttcgacaagaccatcatcgacgtcgacagcgacaactgggt 157 ||||||||||||||||||||||||||||| || ||||| || ||||| Sbjct: 68701 ttcgacttcgacaagaccatcatcgacgttgatagcgataattgggt 68655
>gb|AC172859.1| Brassica rapa subsp. pekinensis clone KBrB023K01, complete sequence Length = 102061 Score = 48.1 bits (24), Expect = 0.023 Identities = 48/56 (85%) Strand = Plus / Minus Query: 108 gtgttcgacttcgacaagaccatcatcgacgtcgacagcgacaactgggtcgtcga 163 |||||||| ||||||||||| || || ||||| || ||||| || ||||||||||| Sbjct: 76798 gtgttcgatttcgacaagacgattattgacgtggatagcgataattgggtcgtcga 76743
>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome Length = 5928787 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 97 gcgtcgtggtggtgttcgactt 118 |||||||||||||||||||||| Sbjct: 1348983 gcgtcgtggtggtgttcgactt 1349004
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 266 cctccgcgacgtcgccgacgtg 287 |||||||||||||||||||||| Sbjct: 1700235 cctccgcgacgtcgccgacgtg 1700256
>ref|NM_196261.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0094J09.11), mRNA Length = 1014 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 134 cgacgtcgacagcgacaactg 154 ||||||||||||||||||||| Sbjct: 624 cgacgtcgacagcgacaactg 644
>gb|AC078839.4| Oryza sativa (japonica cultivar-group) chromosome X clone OSJNBa0094J09, complete sequence Length = 168192 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 134 cgacgtcgacagcgacaactg 154 ||||||||||||||||||||| Sbjct: 54115 cgacgtcgacagcgacaactg 54095
>gb|AY502076.1| Rhodococcus sp. DK17 plasmid pDK3, partial sequence Length = 104578 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 269 ccgcgacgtcgccgacgtgct 289 ||||||||||||||||||||| Sbjct: 85527 ccgcgacgtcgccgacgtgct 85547
>emb|CR733680.2|CNS0GSVZ Tetraodon nigroviridis full-length cDNA Length = 1087 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 238 tgggggagctgcacgcgcagggcaa 262 |||||||||||||||| |||||||| Sbjct: 572 tgggggagctgcacgctcagggcaa 596
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 83 cgtcgagatggccggcgtcgt 103 ||||||||||||||||||||| Sbjct: 2228537 cgtcgagatggccggcgtcgt 2228517
>emb|AJ000264.1|SGJ000264 Streptomyces granaticolor gene encoding protein kinase Length = 4205 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 369 agcgacgccaaccgcttcttcatcg 393 ||||||||||||||| ||||||||| Sbjct: 2881 agcgacgccaaccgcgtcttcatcg 2905
>emb|AJ459818.1|LES459818 Lycopersicon esculentum psi14A gene for putative phosphatase, exons 1-4 Length = 2370 Score = 42.1 bits (21), Expect = 1.4 Identities = 45/53 (84%) Strand = Plus / Plus Query: 105 gtggtgttcgacttcgacaagaccatcatcgacgtcgacagcgacaactgggt 157 ||||| ||||||||||||||||| || ||||| || || || || |||||||| Sbjct: 855 gtggttttcgacttcgacaagacgattatcgatgtggatagtgataactgggt 907
>emb|AJ459817.1|LES459817 Lycopersicon esculentum mRNA for putative phosphatase (psi14A gene) Length = 1198 Score = 42.1 bits (21), Expect = 1.4 Identities = 45/53 (84%) Strand = Plus / Plus Query: 105 gtggtgttcgacttcgacaagaccatcatcgacgtcgacagcgacaactgggt 157 ||||| ||||||||||||||||| || ||||| || || || || |||||||| Sbjct: 52 gtggttttcgacttcgacaagacgattatcgatgtggatagtgataactgggt 104
>gb|AE005677.1| Caulobacter crescentus CB15 section 3 of 359 of the complete genome Length = 14299 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 91 tggccggcgtcgtggtggtgttcga 115 ||||||||||||||| ||||||||| Sbjct: 1543 tggccggcgtcgtggaggtgttcga 1519
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 83 cgtcgagatggccggcgtcgt 103 ||||||||||||||||||||| Sbjct: 3967375 cgtcgagatggccggcgtcgt 3967395
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 134 cgacgtcgacagcgacaactg 154 ||||||||||||||||||||| Sbjct: 12254959 cgacgtcgacagcgacaactg 12254939
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 269 ccgcgacgtcgccgacgtgct 289 ||||||||||||||||||||| Sbjct: 2102653 ccgcgacgtcgccgacgtgct 2102673
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 134 cgacgtcgacagcgacaactg 154 ||||||||||||||||||||| Sbjct: 12262299 cgacgtcgacagcgacaactg 12262279
>dbj|AB193609.1| Streptomyces sp. NRRL 11266 tetronomycin biosynthetic gene cluster, partial and complete cds Length = 113234 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 237 atgggggagctgcacgcgcagggca 261 ||||| ||||||||||||||||||| Sbjct: 44909 atgggcgagctgcacgcgcagggca 44933
>gb|AY714813.1| Cercopithecine herpesvirus 2, complete genome Length = 150715 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 101 cgtggtggtgttcgacttcg 120 |||||||||||||||||||| Sbjct: 63872 cgtggtggtgttcgacttcg 63891
>gb|AY316744.1|AY316743S2 Lysobacter enzymogenes indole-3-glycerol phosphate synthase (trpC) gene, partial cds; and possible phosphoserine phosphatase (serB) gene, complete cds Length = 1216 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 103 tggtggtgttcgacttcgac 122 |||||||||||||||||||| Sbjct: 475 tggtggtgttcgacttcgac 494
>ref|XM_475567.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3084 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 328 tcagggccgcctacagcctcggct 351 |||||||||||| ||||||||||| Sbjct: 1480 tcagggccgcctccagcctcggct 1457
>ref|XM_474613.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2316 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 328 tcagggccgcctacagcctcggct 351 |||||||||||| ||||||||||| Sbjct: 1085 tcagggccgcctccagcctcggct 1062
>gb|AC146328.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0018J01, complete sequence Length = 82510 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 317 cgtcgccgccatcagggccg 336 |||||||||||||||||||| Sbjct: 29405 cgtcgccgccatcagggccg 29386
>gb|AC009744.8| Drosophila melanogaster clone BACR06G16, complete sequence Length = 179038 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 186 ttcgaccgcctgctgcccaccatg 209 ||||||| |||||||||||||||| Sbjct: 173952 ttcgaccccctgctgcccaccatg 173929
>ref|XM_500810.1| Yarrowia lipolytica CLIB122, YALI0B12694g predicted mRNA Length = 6552 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 gtcaagtccaagaagaagga 81 |||||||||||||||||||| Sbjct: 3445 gtcaagtccaagaagaagga 3464
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 190 accgcctgctgcccaccatg 209 |||||||||||||||||||| Sbjct: 1627962 accgcctgctgcccaccatg 1627981
>ref|XM_965617.1| PREDICTED: Tribolium castaneum similar to CG12913-PA (LOC659298), mRNA Length = 4707 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 394 aggccgtcctcgaccaccac 413 |||||||||||||||||||| Sbjct: 4621 aggccgtcctcgaccaccac 4640
>emb|AL939109.1|SCO939109 Streptomyces coelicolor A3(2) complete genome; segment 6/29 Length = 277000 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 388 tcatcgaggccgtcctcgac 407 |||||||||||||||||||| Sbjct: 194448 tcatcgaggccgtcctcgac 194467
>emb|AL663013.4|OSJN00214 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0089K06, complete sequence Length = 129608 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 328 tcagggccgcctacagcctcggct 351 |||||||||||| ||||||||||| Sbjct: 72303 tcagggccgcctccagcctcggct 72280
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 103 tggtggtgttcgacttcgac 122 |||||||||||||||||||| Sbjct: 4433505 tggtggtgttcgacttcgac 4433486
>gb|AC021649.18| Homo sapiens 3 BAC RP11-321F19 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 209521 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 319 tcgccgccatcagggccgcc 338 |||||||||||||||||||| Sbjct: 32003 tcgccgccatcagggccgcc 32022
>gb|AY122108.1| Drosophila melanogaster GH12004 full insert cDNA Length = 4316 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 186 ttcgaccgcctgctgcccaccatg 209 ||||||| |||||||||||||||| Sbjct: 3595 ttcgaccccctgctgcccaccatg 3618
>gb|AC009366.8| Drosophila melanogaster 3L BAC RP98-48E10 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 169841 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 401 cctcgaccaccacggcctcc 420 |||||||||||||||||||| Sbjct: 18144 cctcgaccaccacggcctcc 18163
>gb|AE006010.1| Caulobacter crescentus CB15 section 336 of 359 of the complete genome Length = 10305 Score = 40.1 bits (20), Expect = 5.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 256 agggcaagaccctccgcgacgtcgccga 283 ||||||||||||||||| ||| |||||| Sbjct: 6640 agggcaagaccctccgctacgccgccga 6667
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 386 cttcatcgaggccgtcctcgacca 409 |||||||||||||| ||||||||| Sbjct: 1762945 cttcatcgaggccgacctcgacca 1762922
>ref|NM_176386.1| Drosophila melanogaster CG11489-RC, transcript variant C (CG11489), mRNA Length = 4183 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 401 cctcgaccaccacggcctcc 420 |||||||||||||||||||| Sbjct: 692 cctcgaccaccacggcctcc 711
>ref|NM_164887.1| Drosophila melanogaster CG31714-RA (CG31714), mRNA Length = 4733 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 186 ttcgaccgcctgctgcccaccatg 209 ||||||| |||||||||||||||| Sbjct: 4030 ttcgaccccctgctgcccaccatg 4053
>gb|AY095005.1| Drosophila melanogaster GH08190 full insert cDNA Length = 6773 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 401 cctcgaccaccacggcctcc 420 |||||||||||||||||||| Sbjct: 692 cctcgaccaccacggcctcc 711
>gb|AY089366.1| Drosophila melanogaster AT18808 full insert cDNA Length = 886 Score = 40.1 bits (20), Expect = 5.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 367 tcagcgacgccaaccgcttcttcatcga 394 |||||||||||||| |||||||||||| Sbjct: 375 tcagcgacgccaactccttcttcatcga 402
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 390 atcgaggccgtcctcgacca 409 |||||||||||||||||||| Sbjct: 1062805 atcgaggccgtcctcgacca 1062786
>gb|AC092233.1|AC092233 Drosophila melanogaster, chromosome 2L, region 30F-31B, BAC clone BACR29P12, complete sequence Length = 161446 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 186 ttcgaccgcctgctgcccaccatg 209 ||||||| |||||||||||||||| Sbjct: 157045 ttcgaccccctgctgcccaccatg 157068
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 328 tcagggccgcctacagcctcggct 351 |||||||||||| ||||||||||| Sbjct: 4682170 tcagggccgcctccagcctcggct 4682147
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 317 cgtcgccgccatcagggccg 336 |||||||||||||||||||| Sbjct: 4191405 cgtcgccgccatcagggccg 4191424
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 328 tcagggccgcctacagcctcggct 351 |||||||||||| ||||||||||| Sbjct: 1517470 tcagggccgcctccagcctcggct 1517447
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 391 tcgaggccgtcctcgaccaccacg 414 |||||||| ||||||||||||||| Sbjct: 8404739 tcgaggccctcctcgaccaccacg 8404762
>gb|AY168637.1| Baboon herpesvirus 2 strain X313/860 DNA polymerase gene, partial cds Length = 1702 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 101 cgtggtggtgttcgacttcg 120 |||||||||||||||||||| Sbjct: 621 cgtggtggtgttcgacttcg 640
>dbj|AP003054.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0436D06 Length = 148246 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 91 tggccggcgtcgtggtggtgttcg 114 ||||||||| |||||||||||||| Sbjct: 4451 tggccggcggcgtggtggtgttcg 4428
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 161 cgacggcctgggcgccaccg 180 |||||||||||||||||||| Sbjct: 5865638 cgacggcctgggcgccaccg 5865619
>dbj|AK106017.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-B08, full insert sequence Length = 1342 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 91 tggccggcgtcgtggtggtgttcg 114 ||||||||| |||||||||||||| Sbjct: 1050 tggccggcggcgtggtggtgttcg 1073
>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence Length = 3131724 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 tcgagatggccggcgtcgtg 104 |||||||||||||||||||| Sbjct: 2905647 tcgagatggccggcgtcgtg 2905666
>gb|DQ149153.1| Cercopithecine herpesvirus 16 strain X313, complete genome Length = 156487 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 101 cgtggtggtgttcgacttcg 120 |||||||||||||||||||| Sbjct: 65465 cgtggtggtgttcgacttcg 65484
>gb|AE003627.4| Drosophila melanogaster chromosome 2L, section 36 of 83 of the complete sequence Length = 264225 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 186 ttcgaccgcctgctgcccaccatg 209 ||||||| |||||||||||||||| Sbjct: 91323 ttcgaccccctgctgcccaccatg 91300
>gb|AE003597.4| Drosophila melanogaster chromosome 3L, section 78 of 83 of the complete sequence Length = 365612 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 401 cctcgaccaccacggcctcc 420 |||||||||||||||||||| Sbjct: 151036 cctcgaccaccacggcctcc 151055
>gb|AF057167.1|AF057167 Drosophila melanogaster DEAD-box protein (Ddx1) gene, partial cds; and cysteine string protein (CSP) gene, alternative splice products, complete cds Length = 10519 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 401 cctcgaccaccacggcctcc 420 |||||||||||||||||||| Sbjct: 9823 cctcgaccaccacggcctcc 9842
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 103 tggtggtgttcgacttcgac 122 |||||||||||||||||||| Sbjct: 4436031 tggtggtgttcgacttcgac 4436012
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 131 catcgacgtcgacagcgacaactg 154 |||||||| ||||||||||||||| Sbjct: 2575673 catcgacgccgacagcgacaactg 2575696
>gb|AC005734.1|AC005734 Drosophila melanogaster DNA sequence (P1s DS00058 (D296), DS02068 (D297), and DS07249 (D318)), complete sequence Length = 155335 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 186 ttcgaccgcctgctgcccaccatg 209 ||||||| |||||||||||||||| Sbjct: 29616 ttcgaccccctgctgcccaccatg 29593
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 317 cgtcgccgccatcagggccg 336 |||||||||||||||||||| Sbjct: 4200099 cgtcgccgccatcagggccg 4200118
>emb|CR382128.1| Yarrowia lipolytica chromosome B of strain CLIB122 of Yarrowia lipolytica Length = 3066374 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 gtcaagtccaagaagaagga 81 |||||||||||||||||||| Sbjct: 1696426 gtcaagtccaagaagaagga 1696445
>dbj|AP007294.1| Lotus japonicus genomic DNA, clone:LjT42E17, TM0355, complete sequence Length = 124602 Score = 40.1 bits (20), Expect = 5.6 Identities = 47/56 (83%) Strand = Plus / Minus Query: 102 gtggtggtgttcgacttcgacaagaccatcatcgacgtcgacagcgacaactgggt 157 ||||| || |||||||| || ||||||||||| || ||||||| || |||||||| Sbjct: 118599 gtggttgttttcgactttgataagaccatcattgatatcgacagtgataactgggt 118544
>gb|AC129720.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0683F12, complete sequence Length = 144455 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 328 tcagggccgcctacagcctcggct 351 |||||||||||| ||||||||||| Sbjct: 111550 tcagggccgcctccagcctcggct 111527 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,389,340 Number of Sequences: 3902068 Number of extensions: 2389340 Number of successful extensions: 54395 Number of sequences better than 10.0: 77 Number of HSP's better than 10.0 without gapping: 79 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 52173 Number of HSP's gapped (non-prelim): 2221 length of query: 420 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 398 effective length of database: 17,147,199,772 effective search space: 6824585509256 effective search space used: 6824585509256 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
