ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast52f12 |
|---|---|
| Clone Library Name | barley_pub |
>NUHM_ARATH (O22769) NADH-ubiquinone oxidoreductase 24 kDa subunit,| mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) Length = 255 Score = 121 bits (304), Expect = 7e-28 Identities = 51/78 (65%), Positives = 68/78 (87%) Frame = +2 Query: 206 TGYFSRTFSSALNYHIDSPDNNPNMPWEFTKANMEKVNEILSHYPSNYKQSGIIPMLDLA 385 T +R+ S+ALNYH+DSPDN P++PWEF++AN KV EILS+YPSNYKQS +IP+LDLA Sbjct: 21 TSQVTRSLSTALNYHLDSPDNKPDLPWEFSEANQSKVKEILSYYPSNYKQSAVIPLLDLA 80 Query: 386 QQQHGGWVPAAALDAIAK 439 QQQ+GGW+P +A++A+AK Sbjct: 81 QQQNGGWLPVSAMNAVAK 98
>NUHM_HUMAN (P19404) NADH-ubiquinone oxidoreductase 24 kDa subunit,| mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) Length = 249 Score = 70.1 bits (170), Expect = 2e-12 Identities = 28/68 (41%), Positives = 51/68 (75%) Frame = +2 Query: 236 ALNYHIDSPDNNPNMPWEFTKANMEKVNEILSHYPSNYKQSGIIPMLDLAQQQHGGWVPA 415 AL H D+P+NNP+ P++FT N +++ I+ +YP +K + ++P+LDLAQ+Q+ GW+P Sbjct: 37 ALFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQN-GWLPI 95 Query: 416 AALDAIAK 439 +A++ +A+ Sbjct: 96 SAMNKVAE 103
>NUHM_RAT (P19234) NADH-ubiquinone oxidoreductase 24 kDa subunit,| mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) Length = 248 Score = 70.1 bits (170), Expect = 2e-12 Identities = 28/68 (41%), Positives = 51/68 (75%) Frame = +2 Query: 236 ALNYHIDSPDNNPNMPWEFTKANMEKVNEILSHYPSNYKQSGIIPMLDLAQQQHGGWVPA 415 AL H D+P+NNP+ P++FT N E++ I+ +YP ++ + ++P+LDLAQ+Q+ GW+P Sbjct: 36 ALFVHRDTPENNPDTPFDFTPENYERIEAIVRNYPEGHRAAAVLPVLDLAQRQN-GWLPI 94 Query: 416 AALDAIAK 439 +A++ +A+ Sbjct: 95 SAMNKVAE 102
>NUHM_BOVIN (P04394) NADH-ubiquinone oxidoreductase 24 kDa subunit,| mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) (Polypeptide II) Length = 249 Score = 69.7 bits (169), Expect = 3e-12 Identities = 28/68 (41%), Positives = 50/68 (73%) Frame = +2 Query: 236 ALNYHIDSPDNNPNMPWEFTKANMEKVNEILSHYPSNYKQSGIIPMLDLAQQQHGGWVPA 415 AL H D+P+NNP P++FT N +++ I+ +YP +K + ++P+LDLAQ+Q+ GW+P Sbjct: 37 ALFVHRDTPENNPETPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQN-GWLPI 95 Query: 416 AALDAIAK 439 +A++ +A+ Sbjct: 96 SAMNKVAE 103
>NUHM_MOUSE (Q9D6J6) NADH-ubiquinone oxidoreductase 24 kDa subunit,| mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) Length = 248 Score = 68.6 bits (166), Expect = 7e-12 Identities = 27/68 (39%), Positives = 51/68 (75%) Frame = +2 Query: 236 ALNYHIDSPDNNPNMPWEFTKANMEKVNEILSHYPSNYKQSGIIPMLDLAQQQHGGWVPA 415 AL H D+P+NNP+ P++FT N +++ I+ +YP ++ + ++P+LDLAQ+Q+ GW+P Sbjct: 36 ALFVHRDTPENNPDTPFDFTPENYKRIETIVKNYPEGHQAAAVLPVLDLAQRQN-GWLPI 94 Query: 416 AALDAIAK 439 +A++ +A+ Sbjct: 95 SAMNKVAE 102
>NUHM_CAEEL (Q20719) NADH-ubiquinone oxidoreductase 24 kDa subunit,| mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) Length = 239 Score = 67.0 bits (162), Expect = 2e-11 Identities = 29/70 (41%), Positives = 47/70 (67%) Frame = +2 Query: 230 SSALNYHIDSPDNNPNMPWEFTKANMEKVNEILSHYPSNYKQSGIIPMLDLAQQQHGGWV 409 ++ L H D+ +NN N+ ++FT N E++ I+ YP +K +IP+LDLAQ+QH GW+ Sbjct: 24 ATGLMVHRDTKENNLNVKFKFTSENQERIKAIMDIYPEGHKAGALIPLLDLAQRQH-GWL 82 Query: 410 PAAALDAIAK 439 P +A+ +AK Sbjct: 83 PISAMHEVAK 92
>NUHM_NEUCR (P40915) NADH-ubiquinone oxidoreductase 24 kDa subunit,| mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) Length = 263 Score = 64.7 bits (156), Expect = 1e-10 Identities = 26/61 (42%), Positives = 43/61 (70%) Frame = +2 Query: 218 SRTFSSALNYHIDSPDNNPNMPWEFTKANMEKVNEILSHYPSNYKQSGIIPMLDLAQQQH 397 +R S L H ++PDNNP++P++F+ N + + EI+ YP YK++ ++P+LDL Q+QH Sbjct: 39 ARRPSDTLMVHRNTPDNNPDIPFKFSADNEKVIEEIIKRYPPQYKKAAVMPLLDLGQRQH 98 Query: 398 G 400 G Sbjct: 99 G 99
>NUOE_RICCN (Q92ID9) NADH-quinone oxidoreductase chain E (EC 1.6.99.5) (NADH| dehydrogenase I, chain E) (NDH-1, chain E) Length = 167 Score = 56.2 bits (134), Expect = 4e-08 Identities = 23/49 (46%), Positives = 35/49 (71%) Frame = +2 Query: 290 FTKANMEKVNEILSHYPSNYKQSGIIPMLDLAQQQHGGWVPAAALDAIA 436 F K N+ EI+ YP + K+S I+P+LDLAQ+Q+GGW+P A++ +A Sbjct: 10 FDKKNLNLAEEIIKKYPPHGKRSAILPLLDLAQRQNGGWLPVPAIEYVA 58
>NUOE_RICPR (Q9ZDH5) NADH-quinone oxidoreductase chain E (EC 1.6.99.5) (NADH| dehydrogenase I, chain E) (NDH-1, chain E) Length = 177 Score = 52.8 bits (125), Expect = 4e-07 Identities = 22/54 (40%), Positives = 35/54 (64%) Frame = +2 Query: 275 NMPWEFTKANMEKVNEILSHYPSNYKQSGIIPMLDLAQQQHGGWVPAAALDAIA 436 N + F K N+ I+ YP K+S I+P+LDLAQ+Q+GGW+ +A++ +A Sbjct: 7 NFTFAFDKKNLNLAETIIKKYPPEGKRSAILPLLDLAQRQNGGWLHVSAIEYVA 60
>NUHM_SCHPO (O13691) Probable NADH-ubiquinone oxidoreductase 24 kDa subunit,| mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) Length = 162 Score = 51.2 bits (121), Expect = 1e-06 Identities = 20/49 (40%), Positives = 32/49 (65%) Frame = +2 Query: 290 FTKANMEKVNEILSHYPSNYKQSGIIPMLDLAQQQHGGWVPAAALDAIA 436 F N++ IL+ YP ++ + ++P+LDLAQ+QHG W+P A+ IA Sbjct: 7 FKPENLQLAKAILARYPLRFQSAALVPLLDLAQRQHGTWIPPTAMYEIA 55
>NQO2_PARDE (P29914) NADH-quinone oxidoreductase chain 2 (EC 1.6.99.5) (NADH| dehydrogenase I, chain 2) (NDH-1, chain 2) Length = 239 Score = 40.0 bits (92), Expect = 0.003 Identities = 21/51 (41%), Positives = 31/51 (60%) Frame = +2 Query: 284 WEFTKANMEKVNEILSHYPSNYKQSGIIPMLDLAQQQHGGWVPAAALDAIA 436 +EFT AN+E ++ YP +QS IIP+L AQ+Q GW+ A++ A Sbjct: 13 FEFTPANLEWARAQMTKYPEGRQQSAIIPVLWRAQEQE-GWLSRPAIEYCA 62
>NUOE1_RHIME (P56909) NADH-quinone oxidoreductase chain E 1 (EC 1.6.99.5) (NADH| dehydrogenase I, chain E 1) (NDH-1, chain E 1) Length = 275 Score = 39.3 bits (90), Expect = 0.004 Identities = 19/49 (38%), Positives = 29/49 (59%) Frame = +2 Query: 290 FTKANMEKVNEILSHYPSNYKQSGIIPMLDLAQQQHGGWVPAAALDAIA 436 F+K N + YP +QS +IP+L AQ+Q GWV AA++++A Sbjct: 18 FSKENAAWAEATIKKYPEGREQSAVIPLLMRAQEQ-DGWVTRAAIESVA 65
>CITE2_MOUSE (O35740) Cbp/p300-interacting transactivator 2 (MSG-related protein| 1) (MRG-1) Length = 269 Score = 29.3 bits (64), Expect = 4.6 Identities = 15/32 (46%), Positives = 15/32 (46%), Gaps = 3/32 (9%) Frame = +1 Query: 247 PHRFAGQQPQHAVGVHQGE---YGEGQRNTIS 333 PH QQPQHA GE YG G N S Sbjct: 36 PHHHQQQQPQHAFNALMGEHIHYGAGNMNATS 67
>CITE2_HUMAN (Q99967) Cbp/p300-interacting transactivator 2 (MSG-related protein| 1) (MRG-1) (P35srj) Length = 270 Score = 29.3 bits (64), Expect = 4.6 Identities = 15/32 (46%), Positives = 15/32 (46%), Gaps = 3/32 (9%) Frame = +1 Query: 247 PHRFAGQQPQHAVGVHQGE---YGEGQRNTIS 333 PH QQPQHA GE YG G N S Sbjct: 36 PHHHQQQQPQHAFNALMGEHIHYGAGNMNATS 67
>NUOE_SHIFL (P0AFD3) NADH-quinone oxidoreductase chain E (EC 1.6.99.5) (NADH| dehydrogenase I, chain E) (NDH-1, chain E) (NUO5) Length = 166 Score = 28.9 bits (63), Expect = 6.0 Identities = 17/51 (33%), Positives = 26/51 (50%) Frame = +2 Query: 284 WEFTKANMEKVNEILSHYPSNYKQSGIIPMLDLAQQQHGGWVPAAALDAIA 436 +E + A E + + HY ++ I L + Q+Q G WVP A+ AIA Sbjct: 12 FELSAAEREAIEHEMHHYED--PRAASIEALKIVQKQRG-WVPDGAIHAIA 59
>NUOE_ECOLI (P0AFD1) NADH-quinone oxidoreductase chain E (EC 1.6.99.5) (NADH| dehydrogenase I, chain E) (NDH-1, chain E) (NUO5) Length = 166 Score = 28.9 bits (63), Expect = 6.0 Identities = 17/51 (33%), Positives = 26/51 (50%) Frame = +2 Query: 284 WEFTKANMEKVNEILSHYPSNYKQSGIIPMLDLAQQQHGGWVPAAALDAIA 436 +E + A E + + HY ++ I L + Q+Q G WVP A+ AIA Sbjct: 12 FELSAAEREAIEHEMHHYED--PRAASIEALKIVQKQRG-WVPDGAIHAIA 59
>NUOE_ECOL6 (P0AFD2) NADH-quinone oxidoreductase chain E (EC 1.6.99.5) (NADH| dehydrogenase I, chain E) (NDH-1, chain E) (NUO5) Length = 166 Score = 28.9 bits (63), Expect = 6.0 Identities = 17/51 (33%), Positives = 26/51 (50%) Frame = +2 Query: 284 WEFTKANMEKVNEILSHYPSNYKQSGIIPMLDLAQQQHGGWVPAAALDAIA 436 +E + A E + + HY ++ I L + Q+Q G WVP A+ AIA Sbjct: 12 FELSAAEREAIEHEMHHYED--PRAASIEALKIVQKQRG-WVPDGAIHAIA 59 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 41,817,524 Number of Sequences: 219361 Number of extensions: 673472 Number of successful extensions: 2529 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 2456 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2519 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2677159704 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
