ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast52f11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 62 6e-07
2dbj|AP005165.4| Oryza sativa (japonica cultivar-group) genomic D... 62 6e-07
3ref|XM_476440.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.13
4gb|AC091455.12| Mus musculus chromosome 1, clone RP23-23O9, comp... 44 0.13
5gb|AC162866.5| Mus musculus chromosome 1, clone RP23-90B23, comp... 44 0.13
6dbj|AK108490.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.13
7gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome 42 0.52
8gb|AC147962.1| Oryza sativa chromosome 3 BAC OSJNBa0083K01 genom... 40 2.1
9gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 2.1
10gb|AC123849.3| Mus musculus BAC clone RP23-460B12 from chromosom... 40 2.1
11gb|AC122389.2| Mus musculus BAC clone RP24-80N23 from 16, comple... 40 2.1
12emb|Z46913.1|SAPKSGENE S.ambofaciens gene for hypothetical polyk... 40 2.1
13gb|AC091734.3| Genomic Sequence for Oryza sativa, Nipponbare str... 40 2.1
14gb|AC090465.15| Homo sapiens chromosome 18, clone RP11-527C6, co... 40 2.1
15dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.1
16dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.1
17dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.1
18dbj|AP004085.3| Oryza sativa (japonica cultivar-group) genomic D... 40 2.1
19dbj|AK120406.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.1
20dbj|AK102238.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.1
21dbj|AK100298.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.1
22dbj|AK068643.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.1
23gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 2.1
24gb|AC091975.3| Homo sapiens chromosome 5 clone RP11-524N5, compl... 40 2.1
25gb|M98258.1|SERDNABP Saccharopolyspora hirsuta DNA-binding prote... 40 2.1
26gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome 38 8.2
27ref|NM_192349.1| Oryza sativa (japonica cultivar-group), predic... 38 8.2
28gb|AC145388.2| Oryza sativa chromosome 3 BAC OSJNBb0036M02 genom... 38 8.2
29gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 38 8.2
30gb|AC112979.9| Mus musculus chromosome 3, clone RP24-530C22, com... 38 8.2
31gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome 38 8.2
32ref|XM_417778.1| PREDICTED: Gallus gallus similar to adaptor-rel... 38 8.2
33gb|AC139376.3| Mus musculus BAC clone RP24-420A20 from chromosom... 38 8.2
34gb|AF376790.1| Uncultured archaeon isolate MUAHR 3 16S ribosomal... 38 8.2
35ref|XM_542531.2| PREDICTED: Canis familiaris similar to developi... 38 8.2
36ref|XM_811692.1| Trypanosoma cruzi strain CL Brener aldose 1-epi... 38 8.2
37gb|AC005249.2| Homo sapiens BAC clone GS1-115J1 from 7, complete... 38 8.2
38gb|AC159975.4| Mus musculus chromosome 3, clone RP24-204F16, com... 38 8.2
39emb|BX640445.1| Bordetella bronchiseptica strain RB50, complete ... 38 8.2
40emb|BX640431.1| Bordetella parapertussis strain 12822, complete ... 38 8.2
41gb|AC133930.4| Oryza sativa chromosome 3 BAC OSJNBa0039O18 genom... 38 8.2
42gb|AC073531.22| Homo sapiens 12 BAC RP11-802J22 (Roswell Park Ca... 38 8.2
43emb|AJ719338.1| Gallus gallus mRNA for hypothetical protein, clo... 38 8.2
44gb|AC023385.10| Homo sapiens chromosome 8, clone RP11-675P19, co... 38 8.2
45gb|AF453501.1| Actinosynnema pretiosum subsp. auranticum maytans... 38 8.2
46gb|AC011313.24| Homo sapiens 12 BAC RP11-474B16 (Roswell Park Ca... 38 8.2
47gb|AC079200.6| Homo sapiens chromosome 8, clone RP11-1058B24, co... 38 8.2
48gb|AC110009.3| Homo sapiens chromosome 5 clone RP11-508M8, compl... 38 8.2
49gb|AY958432.1| Homo sapiens methionine sulfoxide reductase gene,... 38 8.2
50dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 38 8.2
51dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 38 8.2
52gb|AC139451.7| Homo sapiens 3 BAC RP13-1056D16 (Roswell Park Can... 38 8.2
53dbj|AP003340.3| Oryza sativa (japonica cultivar-group) genomic D... 38 8.2
54gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome 38 8.2
55gb|AF187532.1|AF187532 Streptomyces nogalater SnoN (snoN) gene, ... 38 8.2
56dbj|AP007226.1| Oryza sativa (japonica cultivar-group) genomic D... 38 8.2
57dbj|AK108369.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 8.2
58gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 38 8.2
59dbj|AP003053.1| Oryza sativa (japonica cultivar-group) genomic D... 38 8.2
60gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome 38 8.2
61dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome 38 8.2
62emb|AL646006.17| Mouse DNA sequence from clone RP23-168C23 on ch... 38 8.2 
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 61.9 bits (31), Expect = 6e-07
 Identities = 45/49 (91%), Gaps = 3/49 (6%)
 Strand = Plus / Minus

                                                                
Query: 120     ggccatggaaggggaggaggagataggcctcgtcctcgcccgcgcctcc 168
               |||||||||||||||||||   || ||||||||||||||||||||||||
Sbjct: 1200262 ggccatggaaggggaggag---attggcctcgtcctcgcccgcgcctcc 1200217
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>dbj|AP005165.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OSJNBa0057M23
          Length = 168029

 Score = 61.9 bits (31), Expect = 6e-07
 Identities = 45/49 (91%), Gaps = 3/49 (6%)
 Strand = Plus / Minus

                                                               
Query: 120    ggccatggaaggggaggaggagataggcctcgtcctcgcccgcgcctcc 168
              |||||||||||||||||||   || ||||||||||||||||||||||||
Sbjct: 101869 ggccatggaaggggaggag---attggcctcgtcctcgcccgcgcctcc 101824
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>ref|XM_476440.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1023

 Score = 44.1 bits (22), Expect = 0.13
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 120 ggccatggaaggggaggaggag 141
           ||||||||||||||||||||||
Sbjct: 90  ggccatggaaggggaggaggag 111
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>gb|AC091455.12| Mus musculus chromosome 1, clone RP23-23O9, complete sequence
          Length = 257924

 Score = 44.1 bits (22), Expect = 0.13
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 125   tggaaggggaggaggagatagg 146
             ||||||||||||||||||||||
Sbjct: 12413 tggaaggggaggaggagatagg 12434
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>gb|AC162866.5| Mus musculus chromosome 1, clone RP23-90B23, complete sequence
          Length = 230597

 Score = 44.1 bits (22), Expect = 0.13
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 125   tggaaggggaggaggagatagg 146
             ||||||||||||||||||||||
Sbjct: 61352 tggaaggggaggaggagatagg 61331
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>dbj|AK108490.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-143-G01, full
           insert sequence
          Length = 1023

 Score = 44.1 bits (22), Expect = 0.13
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 120 ggccatggaaggggaggaggag 141
           ||||||||||||||||||||||
Sbjct: 90  ggccatggaaggggaggaggag 111
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>gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome
          Length = 3179300

 Score = 42.1 bits (21), Expect = 0.52
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 26      cgccgcgaagtgcaagattgc 46
               |||||||||||||||||||||
Sbjct: 1681147 cgccgcgaagtgcaagattgc 1681167
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>gb|AC147962.1| Oryza sativa chromosome 3 BAC OSJNBa0083K01 genomic sequence, complete
             sequence
          Length = 167239

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 118   aaggccatggaaggggaggaggag 141
             ||||||||||||| ||||||||||
Sbjct: 97379 aaggccatggaagaggaggaggag 97402
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 118      aaggccatggaaggggaggaggag 141
                ||||||||||||| ||||||||||
Sbjct: 20987899 aaggccatggaagaggaggaggag 20987876



 Score = 38.2 bits (19), Expect = 8.2
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                           
Query: 82       tttagctagggttctgcatcccccgca 108
                ||||||||||||||||  |||||||||
Sbjct: 26086383 tttagctagggttctgtgtcccccgca 26086409
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>gb|AC123849.3| Mus musculus BAC clone RP23-460B12 from chromosome 16, complete
             sequence
          Length = 172697

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 127   gaaggggaggaggagatagg 146
             ||||||||||||||||||||
Sbjct: 29541 gaaggggaggaggagatagg 29560
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>gb|AC122389.2| Mus musculus BAC clone RP24-80N23 from 16, complete sequence
          Length = 217046

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 127    gaaggggaggaggagatagg 146
              ||||||||||||||||||||
Sbjct: 214649 gaaggggaggaggagatagg 214668
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>emb|Z46913.1|SAPKSGENE S.ambofaciens gene for hypothetical polyketide gene
          Length = 3596

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 146  gcctcgtcctcgcccgcgcc 165
            ||||||||||||||||||||
Sbjct: 2107 gcctcgtcctcgcccgcgcc 2088
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>gb|AC091734.3| Genomic Sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0068A07, from Chromosome 10, complete sequence
          Length = 154505

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 118   aaggccatggaaggggaggaggag 141
             ||||||||||||| ||||||||||
Sbjct: 45354 aaggccatggaagaggaggaggag 45377
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>gb|AC090465.15| Homo sapiens chromosome 18, clone RP11-527C6, complete sequence
          Length = 174535

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 127   gaaggggaggaggagatagg 146
             ||||||||||||||||||||
Sbjct: 67301 gaaggggaggaggagatagg 67282
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 118      aaggccatggaaggggaggaggag 141
                ||||||||||||| ||||||||||
Sbjct: 12523929 aaggccatggaagaggaggaggag 12523952
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 118      aaggccatggaaggggaggaggag 141
                ||||||||||||| ||||||||||
Sbjct: 20980928 aaggccatggaagaggaggaggag 20980905



 Score = 38.2 bits (19), Expect = 8.2
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                           
Query: 82       tttagctagggttctgcatcccccgca 108
                ||||||||||||||||  |||||||||
Sbjct: 26177692 tttagctagggttctgtgtcccccgca 26177718
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 134     aggaggagataggcctcgtc 153
               ||||||||||||||||||||
Sbjct: 6313273 aggaggagataggcctcgtc 6313292
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>dbj|AP004085.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1267_F10
          Length = 162669

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 134    aggaggagataggcctcgtc 153
              ||||||||||||||||||||
Sbjct: 110660 aggaggagataggcctcgtc 110679
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>dbj|AK120406.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089P03, full
           insert sequence
          Length = 2979

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 118 aaggccatggaaggggaggaggag 141
           ||||||||||||| ||||||||||
Sbjct: 126 aaggccatggaagaggaggaggag 103
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>dbj|AK102238.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033088C18, full
           insert sequence
          Length = 1954

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 118 aaggccatggaaggggaggaggag 141
           ||||||||||||| ||||||||||
Sbjct: 77  aaggccatggaagaggaggaggag 54
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>dbj|AK100298.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023077J24, full
           insert sequence
          Length = 3892

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 118 aaggccatggaaggggaggaggag 141
           ||||||||||||| ||||||||||
Sbjct: 126 aaggccatggaagaggaggaggag 103
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>dbj|AK068643.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013159J07, full
           insert sequence
          Length = 2364

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 118 aaggccatggaaggggaggaggag 141
           ||||||||||||| ||||||||||
Sbjct: 126 aaggccatggaagaggaggaggag 103
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 118      aaggccatggaaggggaggaggag 141
                ||||||||||||| ||||||||||
Sbjct: 12531269 aaggccatggaagaggaggaggag 12531292
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>gb|AC091975.3| Homo sapiens chromosome 5 clone RP11-524N5, complete sequence
          Length = 133791

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 127    gaaggggaggaggagatagg 146
              ||||||||||||||||||||
Sbjct: 107498 gaaggggaggaggagatagg 107479
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>gb|M98258.1|SERDNABP Saccharopolyspora hirsuta DNA-binding protein, biotin carboxyl
            carrier protein, polyketide reductase, polyketide
            synthases, and acyl carrier protein genes, complete cds's
          Length = 5135

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 145  ggcctcgtcctcgcccgcgc 164
            ||||||||||||||||||||
Sbjct: 4846 ggcctcgtcctcgcccgcgc 4827
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>gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome
          Length = 4607203

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 53    cactgctcgccgccagcagcggg 75
             |||||||||||||||| ||||||
Sbjct: 47607 cactgctcgccgccagtagcggg 47585
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>ref|NM_192349.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 555

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 147 cctcgtcctcgcccgcgcc 165
           |||||||||||||||||||
Sbjct: 153 cctcgtcctcgcccgcgcc 171
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>gb|AC145388.2| Oryza sativa chromosome 3 BAC OSJNBb0036M02 genomic sequence, complete
             sequence
          Length = 125380

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                        
Query: 82    tttagctagggttctgcatcccccgca 108
             ||||||||||||||||  |||||||||
Sbjct: 16703 tttagctagggttctgtgtcccccgca 16677
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>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 147     cctcgtcctcgcccgcgcc 165
               |||||||||||||||||||
Sbjct: 2022272 cctcgtcctcgcccgcgcc 2022290
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>gb|AC112979.9| Mus musculus chromosome 3, clone RP24-530C22, complete sequence
          Length = 148599

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 124    atggaaggggaggaggaga 142
              |||||||||||||||||||
Sbjct: 113655 atggaaggggaggaggaga 113637
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>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 23      gctcgccgcgaagtgcaag 41
               |||||||||||||||||||
Sbjct: 1439209 gctcgccgcgaagtgcaag 1439227
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>ref|XM_417778.1| PREDICTED: Gallus gallus similar to adaptor-related protein complex
            2, epsilon subunit; transcription factor AP-2 epsilon
            (LOC419631), mRNA
          Length = 4122

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 95   ctgcatcccccgcaccgct 113
            |||||||||||||||||||
Sbjct: 1116 ctgcatcccccgcaccgct 1098
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>gb|AC139376.3| Mus musculus BAC clone RP24-420A20 from chromosome 10, complete sequence
          Length = 184039

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 124    atggaaggggaggaggagatagg 146
              |||||||||||||||||| ||||
Sbjct: 109304 atggaaggggaggaggagttagg 109326
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>gb|AF376790.1| Uncultured archaeon isolate MUAHR 3 16S ribosomal RNA gene,
          partial sequence
          Length = 447

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                             
Query: 9  gccacgaacacaaggctcg 27
          |||||||||||||||||||
Sbjct: 79 gccacgaacacaaggctcg 61
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>ref|XM_542531.2| PREDICTED: Canis familiaris similar to developing brain homeobox 1
           (predicted) (LOC485412), mRNA
          Length = 1041

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 147 cctcgtcctcgcccgcgcc 165
           |||||||||||||||||||
Sbjct: 841 cctcgtcctcgcccgcgcc 823
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>ref|XM_811692.1| Trypanosoma cruzi strain CL Brener aldose 1-epimerase-like protein
           (Tc00.1047053509331.180) partial mRNA
          Length = 1143

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 125 tggaaggggaggaggagat 143
           |||||||||||||||||||
Sbjct: 404 tggaaggggaggaggagat 422
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>gb|AC005249.2| Homo sapiens BAC clone GS1-115J1 from 7, complete sequence
          Length = 162531

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 125   tggaaggggaggaggagat 143
             |||||||||||||||||||
Sbjct: 26872 tggaaggggaggaggagat 26890
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>gb|AC159975.4| Mus musculus chromosome 3, clone RP24-204F16, complete sequence
          Length = 181930

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 124    atggaaggggaggaggaga 142
              |||||||||||||||||||
Sbjct: 153684 atggaaggggaggaggaga 153666
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>emb|BX640445.1| Bordetella bronchiseptica strain RB50, complete genome; segment 9/16
          Length = 348706

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 61    gccgccagcagcgggttgg 79
             |||||||||||||||||||
Sbjct: 74770 gccgccagcagcgggttgg 74788
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>emb|BX640431.1| Bordetella parapertussis strain 12822, complete genome; segment 9/14
          Length = 347894

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 61     gccgccagcagcgggttgg 79
              |||||||||||||||||||
Sbjct: 205335 gccgccagcagcgggttgg 205317
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>gb|AC133930.4| Oryza sativa chromosome 3 BAC OSJNBa0039O18 genomic sequence, complete
             sequence
          Length = 139187

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                        
Query: 82    tttagctagggttctgcatcccccgca 108
             ||||||||||||||||  |||||||||
Sbjct: 70167 tttagctagggttctgtgtcccccgca 70141
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>gb|AC073531.22| Homo sapiens 12 BAC RP11-802J22 (Roswell Park Cancer Institute
           Human BAC Library) complete sequence
          Length = 212172

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 127 gaaggggaggaggagatag 145
           |||||||||||||||||||
Sbjct: 46  gaaggggaggaggagatag 28
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>emb|AJ719338.1| Gallus gallus mRNA for hypothetical protein, clone 1h23
          Length = 2402

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 64   gccagcagcgggttggggt 82
            |||||||||||||||||||
Sbjct: 2094 gccagcagcgggttggggt 2076
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>gb|AC023385.10| Homo sapiens chromosome 8, clone RP11-675P19, complete sequence
          Length = 167118

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 121    gccatggaaggggaggagg 139
              |||||||||||||||||||
Sbjct: 156975 gccatggaaggggaggagg 156993
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>gb|AF453501.1| Actinosynnema pretiosum subsp. auranticum maytansinoid antitumor agent
             ansamitocin biosynthetic gene cluster I, partial sequence
          Length = 82746

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 146   gcctcgtcctcgcccgcgc 164
             |||||||||||||||||||
Sbjct: 25922 gcctcgtcctcgcccgcgc 25940
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>gb|AC011313.24| Homo sapiens 12 BAC RP11-474B16 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 92941

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 127   gaaggggaggaggagatag 145
             |||||||||||||||||||
Sbjct: 90982 gaaggggaggaggagatag 90964
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>gb|AC079200.6| Homo sapiens chromosome 8, clone RP11-1058B24, complete sequence
          Length = 117978

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 121   gccatggaaggggaggagg 139
             |||||||||||||||||||
Sbjct: 81164 gccatggaaggggaggagg 81146
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>gb|AC110009.3| Homo sapiens chromosome 5 clone RP11-508M8, complete sequence
          Length = 137632

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 125   tggaaggggaggaggagat 143
             |||||||||||||||||||
Sbjct: 88644 tggaaggggaggaggagat 88626
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>gb|AY958432.1| Homo sapiens methionine sulfoxide reductase gene, complete cds,
              alternatively spliced
          Length = 379048

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 121    gccatggaaggggaggagg 139
              |||||||||||||||||||
Sbjct: 152854 gccatggaaggggaggagg 152872
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 51      accactgctcgccgccagc 69
               |||||||||||||||||||
Sbjct: 4145175 accactgctcgccgccagc 4145193
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 147      cctcgtcctcgcccgcgcc 165
                |||||||||||||||||||
Sbjct: 26173549 cctcgtcctcgcccgcgcc 26173531
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>gb|AC139451.7| Homo sapiens 3 BAC RP13-1056D16 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 119043

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 118   aaggccatggaaggggaggagga 140
             |||| ||||||||||||||||||
Sbjct: 69204 aagggcatggaaggggaggagga 69182
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>dbj|AP003340.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OJ1316_H05
          Length = 105346

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 147   cctcgtcctcgcccgcgcc 165
             |||||||||||||||||||
Sbjct: 78966 cctcgtcctcgcccgcgcc 78948
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>gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome
          Length = 4599354

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 53    cactgctcgccgccagcagcggg 75
             |||||||||||||||| ||||||
Sbjct: 47093 cactgctcgccgccagtagcggg 47071
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>gb|AF187532.1|AF187532 Streptomyces nogalater SnoN (snoN) gene, partial cds; C-7
            ketoreductase (snoaF), SnoO (snoO), SnoL (snoL), putative
            glycosyl transferase (snogE), putative hydroxylase
            (snoaW), putative glycosyl transferase (snogD), SnoK
            (snoK), nogalonic acid methyl ester cyclase (snoaL),
            putative dTDP-glucose-4,6-dehydratase (snogK), putative
            dTDP-4-dehydrorhamnose reductase (snogC), SnoG (snoG),
            SnogN (snogN), putative polyketide cyclase (snoaM),
            putative amino methylase (snogA), and putative
            dTDP-glucose synthase (snogJ) genes, complete cds; and
            putative aminotransferase (snogI) gene, partial cds
          Length = 16065

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 147  cctcgtcctcgcccgcgcc 165
            |||||||||||||||||||
Sbjct: 6885 cctcgtcctcgcccgcgcc 6903
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>dbj|AP007226.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBb0036B04
          Length = 136159

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 51    accactgctcgccgccagc 69
             |||||||||||||||||||
Sbjct: 78434 accactgctcgccgccagc 78452
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>dbj|AK108369.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-142-D06, full
           insert sequence
          Length = 1161

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 82  tttagctagggttctgcatcccccgca 108
           ||||||||||||||||  |||||||||
Sbjct: 38  tttagctagggttctgtgtcccccgca 64
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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 60      cgccgccagcagcgggttg 78
               |||||||||||||||||||
Sbjct: 3330441 cgccgccagcagcgggttg 3330423



 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 55      ctgctcgccgccagcagcg 73
               |||||||||||||||||||
Sbjct: 2540004 ctgctcgccgccagcagcg 2539986
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>dbj|AP003053.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0047B08
          Length = 57846

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 147   cctcgtcctcgcccgcgcc 165
             |||||||||||||||||||
Sbjct: 14679 cctcgtcctcgcccgcgcc 14661
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>gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome
          Length = 5528445

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 53    cactgctcgccgccagcagcggg 75
             |||||||||||||||| ||||||
Sbjct: 52703 cactgctcgccgccagtagcggg 52681
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>dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome
          Length = 5498450

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 53    cactgctcgccgccagcagcggg 75
             |||||||||||||||| ||||||
Sbjct: 52702 cactgctcgccgccagtagcggg 52680
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>emb|AL646006.17| Mouse DNA sequence from clone RP23-168C23 on chromosome 4, complete
              sequence
          Length = 151509

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 2      tctcgcagccacgaacaca 20
              |||||||||||||||||||
Sbjct: 147940 tctcgcagccacgaacaca 147958


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,273,038
Number of Sequences: 3902068
Number of extensions: 1273038
Number of successful extensions: 122483
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 121154
Number of HSP's gapped (non-prelim): 1327
length of query: 168
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 146
effective length of database: 17,147,199,772
effective search space: 2503491166712
effective search space used: 2503491166712
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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