ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast52f09 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY109356.1| Zea mays CL604_1 mRNA sequence Length = 1502 Score = 79.8 bits (40), Expect = 4e-12 Identities = 70/80 (87%) Strand = Plus / Minus Query: 158 atggccggtctcagtatgaagctcgtcgccgacgacgccatggccgccgcgctcgtcgcc 217 |||||||| ||||| |||||| ||||||||| || ||||||||||||||||||||| || Sbjct: 1392 atggccggcctcaggatgaagttcgtcgccgtcgccgccatggccgccgcgctcgtggcg 1333 Query: 218 tcagcggccgccgccgaggc 237 || || || ||||||||||| Sbjct: 1332 tccgccgcagccgccgaggc 1313
>gb|AY111370.1| Zea mays CL604_2 mRNA sequence Length = 480 Score = 63.9 bits (32), Expect = 2e-07 Identities = 50/56 (89%) Strand = Plus / Minus Query: 158 atggccggtctcagtatgaagctcgtcgccgacgacgccatggccgccgcgctcgt 213 |||||||| ||||| |||||| ||||||||| || ||||||| ||||||||||||| Sbjct: 370 atggccggcctcaggatgaagttcgtcgccgtcgccgccatgaccgccgcgctcgt 315
>gb|AC092779.5| Oryza sativa chromosome 3 BAC OSJNBb0024N19 genomic sequence, complete sequence Length = 121849 Score = 46.1 bits (23), Expect = 0.054 Identities = 23/23 (100%) Strand = Plus / Plus Query: 189 acgacgccatggccgccgcgctc 211 ||||||||||||||||||||||| Sbjct: 28439 acgacgccatggccgccgcgctc 28461
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 46.1 bits (23), Expect = 0.054 Identities = 23/23 (100%) Strand = Plus / Minus Query: 189 acgacgccatggccgccgcgctc 211 ||||||||||||||||||||||| Sbjct: 27150452 acgacgccatggccgccgcgctc 27150430
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 46.1 bits (23), Expect = 0.054 Identities = 23/23 (100%) Strand = Plus / Minus Query: 189 acgacgccatggccgccgcgctc 211 ||||||||||||||||||||||| Sbjct: 27241775 acgacgccatggccgccgcgctc 27241753
>ref|NM_001031630.1| Canis familiaris telomerase reverse transcriptase (TERT), mRNA Length = 3419 Score = 44.1 bits (22), Expect = 0.21 Identities = 22/22 (100%) Strand = Plus / Minus Query: 228 ccgccgaggccccggccccggc 249 |||||||||||||||||||||| Sbjct: 672 ccgccgaggccccggccccggc 651
>gb|AF380351.1| Canis familiaris telomerase reverse transcriptase (TERT) mRNA, complete cds; alternatively spliced Length = 3419 Score = 44.1 bits (22), Expect = 0.21 Identities = 22/22 (100%) Strand = Plus / Minus Query: 228 ccgccgaggccccggccccggc 249 |||||||||||||||||||||| Sbjct: 672 ccgccgaggccccggccccggc 651
>gb|DQ249341.1| Streptomyces hygroscopicus subsp. duamyceticus strain JCM4427 geldanamycin biosynthesis gene cluster, partial sequence Length = 75920 Score = 44.1 bits (22), Expect = 0.21 Identities = 22/22 (100%) Strand = Plus / Plus Query: 182 gtcgccgacgacgccatggccg 203 |||||||||||||||||||||| Sbjct: 49863 gtcgccgacgacgccatggccg 49884
>ref|XM_846571.1| PREDICTED: Canis familiaris telomerase reverse transcriptase (TERT), mRNA Length = 3403 Score = 44.1 bits (22), Expect = 0.21 Identities = 22/22 (100%) Strand = Plus / Minus Query: 228 ccgccgaggccccggccccggc 249 |||||||||||||||||||||| Sbjct: 666 ccgccgaggccccggccccggc 645
>gb|AE005929.1| Caulobacter crescentus CB15 section 255 of 359 of the complete genome Length = 13698 Score = 44.1 bits (22), Expect = 0.21 Identities = 25/26 (96%) Strand = Plus / Plus Query: 194 gccatggccgccgcgctcgtcgcctc 219 ||||||||||||||| |||||||||| Sbjct: 9349 gccatggccgccgcgatcgtcgcctc 9374
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 44.1 bits (22), Expect = 0.21 Identities = 22/22 (100%) Strand = Plus / Plus Query: 196 catggccgccgcgctcgtcgcc 217 |||||||||||||||||||||| Sbjct: 4818353 catggccgccgcgctcgtcgcc 4818374 Score = 42.1 bits (21), Expect = 0.85 Identities = 33/37 (89%) Strand = Plus / Minus Query: 197 atggccgccgcgctcgtcgcctcagcggccgccgccg 233 |||||||||||||||| |||| | || |||||||||| Sbjct: 20395487 atggccgccgcgctcgccgccgccgccgccgccgccg 20395451
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 44.1 bits (22), Expect = 0.21 Identities = 22/22 (100%) Strand = Plus / Minus Query: 190 cgacgccatggccgccgcgctc 211 |||||||||||||||||||||| Sbjct: 5796605 cgacgccatggccgccgcgctc 5796584 Score = 42.1 bits (21), Expect = 0.85 Identities = 21/21 (100%) Strand = Plus / Minus Query: 199 ggccgccgcgctcgtcgcctc 219 ||||||||||||||||||||| Sbjct: 41325330 ggccgccgcgctcgtcgcctc 41325310
>gb|AY179507.1| Streptomyces hygroscopicus strain NRRL 3602 geldanamycin biosynthesis gene cluster, partial sequence Length = 69644 Score = 44.1 bits (22), Expect = 0.21 Identities = 22/22 (100%) Strand = Plus / Plus Query: 182 gtcgccgacgacgccatggccg 203 |||||||||||||||||||||| Sbjct: 42091 gtcgccgacgacgccatggccg 42112
>gb|AF168003.1|AF168003 Desulfovibrio gigas putative PhoP (phoP), putative response regulator (phoR), putative Soj (soj), hypothetical protein, flavodoxin (fld), hypothetical protein, and putative asparagine synthetase (asn) genes, complete cds Length = 10772 Score = 44.1 bits (22), Expect = 0.21 Identities = 22/22 (100%) Strand = Plus / Minus Query: 223 ggccgccgccgaggccccggcc 244 |||||||||||||||||||||| Sbjct: 9332 ggccgccgccgaggccccggcc 9311
>dbj|AP003052.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0016I09 Length = 148517 Score = 44.1 bits (22), Expect = 0.21 Identities = 22/22 (100%) Strand = Plus / Minus Query: 190 cgacgccatggccgccgcgctc 211 |||||||||||||||||||||| Sbjct: 346 cgacgccatggccgccgcgctc 325
>dbj|AP001551.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0451C06 Length = 151773 Score = 44.1 bits (22), Expect = 0.21 Identities = 22/22 (100%) Strand = Plus / Minus Query: 190 cgacgccatggccgccgcgctc 211 |||||||||||||||||||||| Sbjct: 121307 cgacgccatggccgccgcgctc 121286
>dbj|AK102840.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033109M13, full insert sequence Length = 1028 Score = 44.1 bits (22), Expect = 0.21 Identities = 22/22 (100%) Strand = Plus / Plus Query: 190 cgacgccatggccgccgcgctc 211 |||||||||||||||||||||| Sbjct: 72 cgacgccatggccgccgcgctc 93
>gb|AC135425.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0453H11, complete sequence Length = 187956 Score = 44.1 bits (22), Expect = 0.21 Identities = 22/22 (100%) Strand = Plus / Plus Query: 196 catggccgccgcgctcgtcgcc 217 |||||||||||||||||||||| Sbjct: 90761 catggccgccgcgctcgtcgcc 90782
>ref|XM_464826.1| Oryza sativa (japonica cultivar-group), mRNA Length = 588 Score = 42.1 bits (21), Expect = 0.85 Identities = 24/25 (96%) Strand = Plus / Plus Query: 193 cgccatggccgccgcgctcgtcgcc 217 ||||||||||||||||||| ||||| Sbjct: 183 cgccatggccgccgcgctcctcgcc 207
>ref|NM_189705.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1587 Score = 42.1 bits (21), Expect = 0.85 Identities = 21/21 (100%) Strand = Plus / Minus Query: 199 ggccgccgcgctcgtcgcctc 219 ||||||||||||||||||||| Sbjct: 100 ggccgccgcgctcgtcgcctc 80
>gb|AC137623.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0426G01, complete sequence Length = 173074 Score = 42.1 bits (21), Expect = 0.85 Identities = 33/37 (89%) Strand = Plus / Minus Query: 197 atggccgccgcgctcgtcgcctcagcggccgccgccg 233 |||||||||||||||| |||| | || |||||||||| Sbjct: 67232 atggccgccgcgctcgccgccgccgccgccgccgccg 67196
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 42.1 bits (21), Expect = 0.85 Identities = 21/21 (100%) Strand = Plus / Plus Query: 222 cggccgccgccgaggccccgg 242 ||||||||||||||||||||| Sbjct: 3964110 cggccgccgccgaggccccgg 3964130
>ref|XM_537009.2| PREDICTED: Canis familiaris similar to Na(+)/H(+) exchange regulatory cofactor NHE-RF2 (NHERF-2) (Tyrosine kinase activator protein 1) (TKA-1) (SRY interacting protein 1) (SIP-1) (Solute carrier family 9 isoform A3 regulatory factor 2) (NHE3 kinase A regulatory protein E3KARP... (LOC479884), mRNA Length = 2209 Score = 42.1 bits (21), Expect = 0.85 Identities = 21/21 (100%) Strand = Plus / Plus Query: 124 tcccagcaccaccaggagcca 144 ||||||||||||||||||||| Sbjct: 2020 tcccagcaccaccaggagcca 2040
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 42.1 bits (21), Expect = 0.85 Identities = 24/25 (96%) Strand = Plus / Plus Query: 225 ccgccgccgaggccccggccccggc 249 ||||||||| ||||||||||||||| Sbjct: 4057360 ccgccgccgcggccccggccccggc 4057384
>emb|BX842583.1| Mycobacterium tuberculosis H37Rv complete genome; segment 12/13 Length = 349606 Score = 42.1 bits (21), Expect = 0.85 Identities = 21/21 (100%) Strand = Plus / Plus Query: 222 cggccgccgccgaggccccgg 242 ||||||||||||||||||||| Sbjct: 154791 cggccgccgccgaggccccgg 154811
>emb|BX248346.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 13/14 Length = 316050 Score = 42.1 bits (21), Expect = 0.85 Identities = 21/21 (100%) Strand = Plus / Plus Query: 222 cggccgccgccgaggccccgg 242 ||||||||||||||||||||| Sbjct: 164182 cggccgccgccgaggccccgg 164202
>dbj|AB041960.1| TT virus DNA, complete genome, isolate:So-TTV2 Length = 3371 Score = 42.1 bits (21), Expect = 0.85 Identities = 27/29 (93%) Strand = Plus / Plus Query: 184 cgccgacgacgccatggccgccgcgctcg 212 |||||||| ||| |||||||||||||||| Sbjct: 818 cgccgacgccgctatggccgccgcgctcg 846
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 42.1 bits (21), Expect = 0.85 Identities = 21/21 (100%) Strand = Plus / Plus Query: 199 ggccgccgcgctcgtcgcctc 219 ||||||||||||||||||||| Sbjct: 16824183 ggccgccgcgctcgtcgcctc 16824203 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 198 tggccgccgcgctcgtcgcc 217 |||||||||||||||||||| Sbjct: 10790703 tggccgccgcgctcgtcgcc 10790722
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 0.85 Identities = 21/21 (100%) Strand = Plus / Minus Query: 199 ggccgccgcgctcgtcgcctc 219 ||||||||||||||||||||| Sbjct: 24208288 ggccgccgcgctcgtcgcctc 24208268
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 0.85 Identities = 21/21 (100%) Strand = Plus / Plus Query: 199 ggccgccgcgctcgtcgcctc 219 ||||||||||||||||||||| Sbjct: 12379838 ggccgccgcgctcgtcgcctc 12379858 Score = 42.1 bits (21), Expect = 0.85 Identities = 24/25 (96%) Strand = Plus / Minus Query: 193 cgccatggccgccgcgctcgtcgcc 217 ||||||||||||||||||| ||||| Sbjct: 8404884 cgccatggccgccgcgctcctcgcc 8404860
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 42.1 bits (21), Expect = 0.85 Identities = 21/21 (100%) Strand = Plus / Minus Query: 190 cgacgccatggccgccgcgct 210 ||||||||||||||||||||| Sbjct: 2957155 cgacgccatggccgccgcgct 2957135 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 188 gacgacgccatggccgccgc 207 |||||||||||||||||||| Sbjct: 2980653 gacgacgccatggccgccgc 2980634
>gb|AC139768.14| Homo sapiens 12 BAC RP11-454E5 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 78491 Score = 42.1 bits (21), Expect = 0.85 Identities = 27/29 (93%) Strand = Plus / Plus Query: 221 gcggccgccgccgaggccccggccccggc 249 ||||| ||||||| ||||||||||||||| Sbjct: 28197 gcggcggccgccgtggccccggccccggc 28225
>dbj|AP004031.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0432C03 Length = 164394 Score = 42.1 bits (21), Expect = 0.85 Identities = 21/21 (100%) Strand = Plus / Minus Query: 199 ggccgccgcgctcgtcgcctc 219 ||||||||||||||||||||| Sbjct: 16823 ggccgccgcgctcgtcgcctc 16803
>dbj|AP005559.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1163_C07 Length = 107121 Score = 42.1 bits (21), Expect = 0.85 Identities = 21/21 (100%) Strand = Plus / Plus Query: 199 ggccgccgcgctcgtcgcctc 219 ||||||||||||||||||||| Sbjct: 21874 ggccgccgcgctcgtcgcctc 21894
>dbj|AP004891.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0705A04 Length = 182468 Score = 42.1 bits (21), Expect = 0.85 Identities = 21/21 (100%) Strand = Plus / Plus Query: 199 ggccgccgcgctcgtcgcctc 219 ||||||||||||||||||||| Sbjct: 59975 ggccgccgcgctcgtcgcctc 59995
>dbj|AP004781.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0691E09 Length = 149859 Score = 42.1 bits (21), Expect = 0.85 Identities = 21/21 (100%) Strand = Plus / Minus Query: 199 ggccgccgcgctcgtcgcctc 219 ||||||||||||||||||||| Sbjct: 38377 ggccgccgcgctcgtcgcctc 38357
>dbj|AP003711.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0417G12 Length = 163568 Score = 42.1 bits (21), Expect = 0.85 Identities = 21/21 (100%) Strand = Plus / Minus Query: 199 ggccgccgcgctcgtcgcctc 219 ||||||||||||||||||||| Sbjct: 141746 ggccgccgcgctcgtcgcctc 141726
>dbj|AP005511.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0011N12 Length = 158586 Score = 42.1 bits (21), Expect = 0.85 Identities = 24/25 (96%) Strand = Plus / Minus Query: 193 cgccatggccgccgcgctcgtcgcc 217 ||||||||||||||||||| ||||| Sbjct: 57734 cgccatggccgccgcgctcctcgcc 57710
>gb|AF047034.2|AF047034 Streptomyces seoulensis dihydrolipoamide dehydrogenase (pdhL), dihydrolipoamide acetyltransferase (pdhB), putative transcriptonal regulator PdhR (pdhR), and pyruvate dehydrogenase component (pdhA) genes, complete cds Length = 7398 Score = 42.1 bits (21), Expect = 0.85 Identities = 24/25 (96%) Strand = Plus / Plus Query: 225 ccgccgccgaggccccggccccggc 249 ||||||||||||| ||||||||||| Sbjct: 1825 ccgccgccgaggctccggccccggc 1849 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 ccgccgccgaggccccggcc 244 |||||||||||||||||||| Sbjct: 2221 ccgccgccgaggccccggcc 2240
>dbj|AK067277.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013099K07, full insert sequence Length = 1626 Score = 42.1 bits (21), Expect = 0.85 Identities = 33/37 (89%) Strand = Plus / Plus Query: 197 atggccgccgcgctcgtcgcctcagcggccgccgccg 233 |||||||||||||||| |||| | || |||||||||| Sbjct: 69 atggccgccgcgctcgccgccgccgccgccgccgccg 105
>gb|AE001825.1| Deinococcus radiodurans R1 chromosome 2, complete sequence Length = 412348 Score = 42.1 bits (21), Expect = 0.85 Identities = 21/21 (100%) Strand = Plus / Plus Query: 198 tggccgccgcgctcgtcgcct 218 ||||||||||||||||||||| Sbjct: 64571 tggccgccgcgctcgtcgcct 64591
>gb|M14001.1|SH1GGP50 Pseudorabies virus (PRV) glycoprotein gp50 gene, complete cds Length = 1440 Score = 42.1 bits (21), Expect = 0.85 Identities = 21/21 (100%) Strand = Plus / Plus Query: 229 cgccgaggccccggccccggc 249 ||||||||||||||||||||| Sbjct: 982 cgccgaggccccggccccggc 1002
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 42.1 bits (21), Expect = 0.85 Identities = 24/25 (96%) Strand = Plus / Plus Query: 221 gcggccgccgccgaggccccggccc 245 ||||||||||||||||||| ||||| Sbjct: 271446 gcggccgccgccgaggcccgggccc 271470
>gb|BC025467.1| Mus musculus AE binding protein 2, mRNA (cDNA clone IMAGE:5351959) Length = 3752 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 cgccatggccgccgcgctcg 212 |||||||||||||||||||| Sbjct: 201 cgccatggccgccgcgctcg 220
>gb|AY877437.1| Fusarium oxysporum strain 146 VIZR strain specific genomic sequence Length = 377 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 176 aagctcgtcgccgacgacgc 195 |||||||||||||||||||| Sbjct: 318 aagctcgtcgccgacgacgc 337
>gb|AC153624.20| Mus musculus 6 BAC RP23-117P3 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 224115 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 atcccagcaccaccaggagc 142 |||||||||||||||||||| Sbjct: 150729 atcccagcaccaccaggagc 150748
>gb|AF396828.2| Gallus gallus bHLH-PAS clock protein (MOP4) mRNA, complete cds Length = 2448 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 228 ccgccgaggccccggccccggctc 251 ||||||||||||||||||| |||| Sbjct: 1917 ccgccgaggccccggccccagctc 1940
>ref|XM_368468.1| Magnaporthe grisea 70-15 chromosome VI hypothetical protein (MG00776.4) partial mRNA Length = 984 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 191 gacgccatggccgccgcgct 210 |||||||||||||||||||| Sbjct: 106 gacgccatggccgccgcgct 125
>ref|NM_001030542.1| Gallus gallus neuronal PAS domain protein 2 (NPAS2), mRNA Length = 2448 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 228 ccgccgaggccccggccccggctc 251 ||||||||||||||||||| |||| Sbjct: 1917 ccgccgaggccccggccccagctc 1940
>gb|AC133098.7| Mus musculus BAC clone RP23-336L12 from chromosome 6, complete sequence Length = 182955 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 cgccatggccgccgcgctcg 212 |||||||||||||||||||| Sbjct: 30404 cgccatggccgccgcgctcg 30423
>gb|AY526909.1| Bordetella phage BIP-1, complete genome Length = 42638 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 221 gcggccgccgccgaggccccggcc 244 |||| ||||||||||||||||||| Sbjct: 32395 gcggtcgccgccgaggccccggcc 32418
>gb|AY526908.1| Bordetella phage BMP-1, complete genome Length = 42663 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 221 gcggccgccgccgaggccccggcc 244 |||| ||||||||||||||||||| Sbjct: 32396 gcggtcgccgccgaggccccggcc 32419
>gb|AY029185.2| Bordetella phage BPP-1, complete genome Length = 42493 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 221 gcggccgccgccgaggccccggcc 244 |||| ||||||||||||||||||| Sbjct: 32394 gcggtcgccgccgaggccccggcc 32417
>ref|XM_534007.2| PREDICTED: Canis familiaris similar to microtubule-associated protein 6 isoform 1 (LOC476803), mRNA Length = 2429 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 223 ggccgccgccgaggccccgg 242 |||||||||||||||||||| Sbjct: 624 ggccgccgccgaggccccgg 643
>ref|XM_539199.2| PREDICTED: Canis familiaris similar to tigger transposable element derived 5 (LOC482078), mRNA Length = 2544 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 234 aggccccggccccggctccc 253 |||||||||||||||||||| Sbjct: 1239 aggccccggccccggctccc 1258
>ref|XM_546786.2| PREDICTED: Canis familiaris similar to Zinc finger protein 469 (LOC489666), mRNA Length = 11049 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 cccagcaccaccaggagcca 144 |||||||||||||||||||| Sbjct: 2773 cccagcaccaccaggagcca 2792
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 212 gtcgcctcagcggccgccgc 231 |||||||||||||||||||| Sbjct: 1826239 gtcgcctcagcggccgccgc 1826220
>ref|XM_502711.1| Yarrowia lipolytica CLIB122, YALI0D11704g predicted mRNA Length = 1530 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 agcagagtcagcagcagcaa 112 |||||||||||||||||||| Sbjct: 183 agcagagtcagcagcagcaa 164
>emb|AL158823.11| Human DNA sequence from clone RP11-151F5 on chromosome 9 Contains part of the AKAP2 (PALM2) gene for A kinase (PRKA) anchor protein 2 (paralemmin 2), a ribosomal protein L21 (RPL21) pseudogene and a CpG island, complete sequence Length = 175558 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 125 cccagcaccaccaggagccaaccc 148 |||||||||| ||||||||||||| Sbjct: 158752 cccagcaccagcaggagccaaccc 158729
>gb|AC141480.4| Mus musculus BAC clone RP23-210I6 from chromosome 3, complete sequence Length = 209458 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 catctctctagctcccccct 79 |||||||||||||||||||| Sbjct: 81007 catctctctagctcccccct 81026
>emb|AL939112.1|SCO939112 Streptomyces coelicolor A3(2) complete genome; segment 9/29 Length = 300800 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 229 cgccgaggccccggccccgg 248 |||||||||||||||||||| Sbjct: 74482 cgccgaggccccggccccgg 74463
>emb|AL939104.1|SCO939104 Streptomyces coelicolor A3(2) complete genome; segment 1/29 Length = 299050 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 cgccatggccgccgcgctcg 212 |||||||||||||||||||| Sbjct: 203145 cgccatggccgccgcgctcg 203126
>gb|AC144537.16| Glycine max clone gmw1-42i18, complete sequence Length = 113397 Score = 40.1 bits (20), Expect = 3.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 103 gcagcagcaagcaaggtcacatcccagc 130 ||||||||||| ||| |||||||||||| Sbjct: 113284 gcagcagcaagtaagctcacatcccagc 113311
>gb|AC068924.11| Oryza sativa chromosome 10 BAC OSJNBa0026L12 genomic sequence, complete sequence Length = 152172 Score = 40.1 bits (20), Expect = 3.4 Identities = 32/36 (88%) Strand = Plus / Plus Query: 184 cgccgacgacgccatggccgccgcgctcgtcgcctc 219 ||||| || |||||||||||||||| ||| |||||| Sbjct: 53131 cgccgccgccgccatggccgccgcggtcgccgcctc 53166
>gb|AF434666.1|AF434666 Petromyzon marinus Hox4w (hox4w) mRNA, partial cds Length = 816 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 92 cagcagagtcagcagcagca 111 |||||||||||||||||||| Sbjct: 436 cagcagagtcagcagcagca 455
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 tggccgccgcgctcgtcgcc 217 |||||||||||||||||||| Sbjct: 3358050 tggccgccgcgctcgtcgcc 3358031
>ref|NM_001005605.1| Mus musculus AE binding protein 2 (Aebp2), transcript variant 1, mRNA Length = 6192 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 cgccatggccgccgcgctcg 212 |||||||||||||||||||| Sbjct: 3 cgccatggccgccgcgctcg 22
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 188 gacgacgccatggccgccgc 207 |||||||||||||||||||| Sbjct: 18655281 gacgacgccatggccgccgc 18655262
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 3.4 Identities = 32/36 (88%) Strand = Plus / Minus Query: 184 cgccgacgacgccatggccgccgcgctcgtcgcctc 219 ||||| || |||||||||||||||| ||| |||||| Sbjct: 19323250 cgccgccgccgccatggccgccgcggtcgccgcctc 19323215
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 cgccatggccgccgcgctcg 212 |||||||||||||||||||| Sbjct: 7431999 cgccatggccgccgcgctcg 7431980 Score = 40.1 bits (20), Expect = 3.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 207 cgctcgtcgcctcagcggccgccgccga 234 ||||||||||| | |||||||||||||| Sbjct: 2274881 cgctcgtcgccaccgcggccgccgccga 2274908
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 193 cgccatggccgccgcgctcgtcgc 216 ||||||||||| |||||||||||| Sbjct: 456221 cgccatggccgacgcgctcgtcgc 456244
>dbj|AP005313.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0512H04 Length = 151049 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 198 tggccgccgcgctcgtcgcc 217 |||||||||||||||||||| Sbjct: 14426 tggccgccgcgctcgtcgcc 14445
>dbj|AP005700.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBb0085I16 Length = 141701 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 198 tggccgccgcgctcgtcgcc 217 |||||||||||||||||||| Sbjct: 127321 tggccgccgcgctcgtcgcc 127340
>gb|AE005115.1| Halobacterium sp. NRC-1 section 146 of 170 of the complete genome Length = 14635 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 184 cgccgacgacgccatggccgccgc 207 ||||||||||||||| |||||||| Sbjct: 2103 cgccgacgacgccatcgccgccgc 2080
>dbj|AB117987.1| Oryza sativa (japonica cultivar-group) bip103 mRNA for BRI1-KD interacting protein 103, complete cds Length = 2366 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 198 tggccgccgcgctcgtcgcc 217 |||||||||||||||||||| Sbjct: 1903 tggccgccgcgctcgtcgcc 1922
>dbj|AK100527.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023101D09, full insert sequence Length = 2295 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 198 tggccgccgcgctcgtcgcc 217 |||||||||||||||||||| Sbjct: 1905 tggccgccgcgctcgtcgcc 1924
>dbj|AK070291.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023052I10, full insert sequence Length = 1849 Score = 40.1 bits (20), Expect = 3.4 Identities = 32/36 (88%) Strand = Plus / Plus Query: 184 cgccgacgacgccatggccgccgcgctcgtcgcctc 219 ||||| || |||||||||||||||| ||| |||||| Sbjct: 42 cgccgccgccgccatggccgccgcggtcgccgcctc 77
>dbj|AK059253.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-024-H05, full insert sequence Length = 1352 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 198 tggccgccgcgctcgtcgcc 217 |||||||||||||||||||| Sbjct: 981 tggccgccgcgctcgtcgcc 1000
>emb|CR761139.2| Xenopus tropicalis finished cDNA, clone TEgg098c06 Length = 889 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 92 cagcagagtcagcagcagca 111 |||||||||||||||||||| Sbjct: 454 cagcagagtcagcagcagca 473
>gb|AC006123.1|AC006123 Homo sapiens chromosome 19, cosmid R28177, complete sequence Length = 45858 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 gtcacatcccagcaccacca 137 |||||||||||||||||||| Sbjct: 35324 gtcacatcccagcaccacca 35343
>gb|AC140241.3| Mus musculus BAC clone RP23-283I15 from chromosome 17, complete sequence Length = 158575 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 99 gtcagcagcagcaagcaaggtcac 122 |||||||||||| ||||||||||| Sbjct: 67792 gtcagcagcagccagcaaggtcac 67769
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 189 acgacgccatggccgccgcgctcg 212 ||||||||| |||||||||||||| Sbjct: 2293665 acgacgccaaggccgccgcgctcg 2293642
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 3.4 Identities = 32/36 (88%) Strand = Plus / Minus Query: 184 cgccgacgacgccatggccgccgcgctcgtcgcctc 219 ||||| || |||||||||||||||| ||| |||||| Sbjct: 19334526 cgccgccgccgccatggccgccgcggtcgccgcctc 19334491
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 188 gacgacgccatggccgccgc 207 |||||||||||||||||||| Sbjct: 18581507 gacgacgccatggccgccgc 18581488
>emb|AL845345.9|CNS08CB7 Oryza sativa chromosome 12, . BAC OSJNBa0023G11 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 180599 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 188 gacgacgccatggccgccgc 207 |||||||||||||||||||| Sbjct: 88733 gacgacgccatggccgccgc 88714
>gb|AC003107.1|AC003107 Human DNA from chromosome 19-specific cosmid R30064 containing the COMP gene, genomic sequence, complete sequence Length = 46275 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 gtcacatcccagcaccacca 137 |||||||||||||||||||| Sbjct: 1446 gtcacatcccagcaccacca 1465
>emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB122 of Yarrowia lipolytica Length = 3633272 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 agcagagtcagcagcagcaa 112 |||||||||||||||||||| Sbjct: 1452668 agcagagtcagcagcagcaa 1452687
>gb|AC163715.5| Mus musculus BAC clone RP23-367H6 from chromosome 17, complete sequence Length = 208781 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 99 gtcagcagcagcaagcaaggtcac 122 |||||||||||| ||||||||||| Sbjct: 97322 gtcagcagcagccagcaaggtcac 97299 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,651,244 Number of Sequences: 3902068 Number of extensions: 2651244 Number of successful extensions: 66446 Number of sequences better than 10.0: 88 Number of HSP's better than 10.0 without gapping: 93 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 64133 Number of HSP's gapped (non-prelim): 2313 length of query: 259 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 237 effective length of database: 17,147,199,772 effective search space: 4063886345964 effective search space used: 4063886345964 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
