ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast52f01 |
|---|---|
| Clone Library Name | barley_pub |
>ZN575_MACFA (Q9GM03) Zinc finger protein 575| Length = 260 Score = 35.4 bits (80), Expect = 0.065 Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 3/87 (3%) Frame = +2 Query: 2 DAPAAACQPAPTSATRSARDLHSLRPAGSPSHPQSIAIPSCLISFDSRISTFHLRRPGSE 181 D P + C P+ +A R RP P P++ + PS L + R+ PGS+ Sbjct: 166 DCPKSFCYPSKLAAHRHTHHATDARPYPCPHCPKAFSFPSKLAA--HRLCHDPPTAPGSQ 223 Query: 182 AS---KLRSCQPASGHVFLVGQPQRSH 253 A+ + SC A G L+ QRSH Sbjct: 224 ATARHRCSSCGQAFGQRRLLLLHQRSH 250
>ZN575_HUMAN (Q86XF7) Zinc finger protein 575| Length = 245 Score = 35.4 bits (80), Expect = 0.065 Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 3/87 (3%) Frame = +2 Query: 2 DAPAAACQPAPTSATRSARDLHSLRPAGSPSHPQSIAIPSCLISFDSRISTFHLRRPGSE 181 D P + C P+ +A R RP P P++ + PS L + R+ PGS+ Sbjct: 151 DCPKSFCYPSKLAAHRHTHHATDARPYPCPHCPKAFSFPSKLAA--HRLCHDPPTAPGSQ 208 Query: 182 AS---KLRSCQPASGHVFLVGQPQRSH 253 A+ + SC A G L+ QRSH Sbjct: 209 ATAWHRCSSCGQAFGQRRLLLLHQRSH 235
>ZN575_MOUSE (Q3TXZ1) Zinc finger protein 575| Length = 239 Score = 33.9 bits (76), Expect = 0.19 Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 3/87 (3%) Frame = +2 Query: 2 DAPAAACQPAPTSATRSARDLHSLRPAGSPSHPQSIAIPSCLISFDSRISTFHLRRPGSE 181 D P + C P+ +A R RP P P++ + PS L + R+ P S+ Sbjct: 145 DCPKSFCYPSKLAAHRHTHHATDARPYPCPHCPKAFSFPSKLAA--HRLCHDPPTAPSSQ 202 Query: 182 AS---KLRSCQPASGHVFLVGQPQRSH 253 A+ + SC A G L+ QRSH Sbjct: 203 ATGSHRCSSCNQAFGQRRLLLVHQRSH 229
>PICA_RAT (O55012) Phosphatidylinositol-binding clathrin assembly protein| (Clathrin assembly lymphoid myeloid leukemia protein) (rCALM) Length = 640 Score = 31.6 bits (70), Expect = 0.93 Identities = 15/38 (39%), Positives = 25/38 (65%) Frame = +3 Query: 144 ASPLSISAGRDLKQASSDLASQPAAMSSSSDNPNEVTD 257 ASP+S SAG + + D+ S P++ +S+S PN++ D Sbjct: 358 ASPVSTSAGGIMTAPAIDIFSTPSSSNSTSKLPNDLLD 395
>PICA_MOUSE (Q7M6Y3) Phosphatidylinositol-binding clathrin assembly protein| (Clathrin assembly lymphoid myeloid leukemia) (CALM) Length = 660 Score = 31.6 bits (70), Expect = 0.93 Identities = 15/38 (39%), Positives = 25/38 (65%) Frame = +3 Query: 144 ASPLSISAGRDLKQASSDLASQPAAMSSSSDNPNEVTD 257 ASP+S SAG + + D+ S P++ +S+S PN++ D Sbjct: 358 ASPVSTSAGGIMTAPAIDIFSTPSSSNSTSKLPNDLLD 395
>PICAL_HUMAN (Q13492) Phosphatidylinositol-binding clathrin assembly protein| (Clathrin assembly lymphoid myeloid leukemia protein) Length = 652 Score = 31.6 bits (70), Expect = 0.93 Identities = 15/38 (39%), Positives = 25/38 (65%) Frame = +3 Query: 144 ASPLSISAGRDLKQASSDLASQPAAMSSSSDNPNEVTD 257 ASP+S SAG + + D+ S P++ +S+S PN++ D Sbjct: 358 ASPVSTSAGGIMTAPAIDIFSTPSSSNSTSKLPNDLLD 395
>ATG15_DEBHA (Q6BLM0) Putative lipase ATG15 (EC 3.1.1.3) (Autophagy-related| protein 15) Length = 615 Score = 30.0 bits (66), Expect = 2.7 Identities = 18/59 (30%), Positives = 23/59 (38%) Frame = +2 Query: 26 PAPTSATRSARDLHSLRPAGSPSHPQSIAIPSCLISFDSRISTFHLRRPGSEASKLRSC 202 P P S RS+ H P S S PSC SF S +F + P + + C Sbjct: 533 PKPPSTVRSSNMPHEQSPNASRSLSSLCTEPSCTSSFQSVSPSFSSQLPSHPSQNPQRC 591
>CHFR_HUMAN (Q96EP1) Ubiquitin-protein ligase CHFR (EC 6.3.2.-) (Checkpoint| with forkhead and RING finger domains protein) Length = 664 Score = 29.6 bits (65), Expect = 3.5 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 1/60 (1%) Frame = +2 Query: 8 PAAACQPAPTSATRSARDLHSLRPAGSPSHPQSIA-IPSCLISFDSRISTFHLRRPGSEA 184 P C+ P ++A+ H P G P PQ++ PS +S + + + GS A Sbjct: 424 PYVVCRQCPEYRRQAAQPPHCPAPEGEPGAPQALGDAPSTSVSLTTAVQDYVCPLQGSHA 483
>FMT_MOUSE (Q9D799) Methionyl-tRNA formyltransferase, mitochondrial precursor| (EC 2.1.2.9) (MtFMT) Length = 386 Score = 29.3 bits (64), Expect = 4.6 Identities = 15/35 (42%), Positives = 20/35 (57%) Frame = -2 Query: 212 WLAGKIGACLLQIPAGGDGKWRCGNQMKSNKRGWR 108 WL G+ C Q PAG DGK G++++ K WR Sbjct: 11 WLMGRRPRCSCQAPAGFDGKDGRGSRVR-EKPPWR 44
>RAD52_ASHGO (Q756F4) DNA repair and recombination protein RAD52| Length = 435 Score = 29.3 bits (64), Expect = 4.6 Identities = 19/57 (33%), Positives = 27/57 (47%) Frame = +1 Query: 46 TLRTRSPLAPSSRIPFPSSVHRHPLLFDFI*FPHLHFPSPPAGI*SKQAPILPASQR 216 TL R L+ +P +S + P + + P LHFP P A P +PAS+R Sbjct: 368 TLAARPALSAPQNLPTNTSSIQRPTMIEL---PKLHFPQPTA----VPLPNVPASRR 417
>MNTH_LISMO (Q8Y773) Probable manganese transport protein mntH| Length = 448 Score = 28.9 bits (63), Expect = 6.0 Identities = 15/23 (65%), Positives = 16/23 (69%) Frame = +3 Query: 144 ASPLSISAGRDLKQASSDLASQP 212 AS L I GRDL QASSD S+P Sbjct: 93 ASKLGIVTGRDLAQASSDHFSKP 115
>MNTH_LISMF (Q71ZP6) Probable manganese transport protein mntH| Length = 448 Score = 28.9 bits (63), Expect = 6.0 Identities = 15/23 (65%), Positives = 16/23 (69%) Frame = +3 Query: 144 ASPLSISAGRDLKQASSDLASQP 212 AS L I GRDL QASSD S+P Sbjct: 93 ASKLGIVTGRDLAQASSDHFSKP 115
>MNTH_LISIN (Q92BT1) Probable manganese transport protein mntH| Length = 448 Score = 28.9 bits (63), Expect = 6.0 Identities = 15/23 (65%), Positives = 16/23 (69%) Frame = +3 Query: 144 ASPLSISAGRDLKQASSDLASQP 212 AS L I GRDL QASSD S+P Sbjct: 93 ASKLGIVTGRDLAQASSDHFSKP 115
>PFA4_GIBZE (Q4IMZ7) Palmitoyltransferase PFA4 (EC 2.3.1.-) (Protein fatty| acyltransferase 4) Length = 437 Score = 28.9 bits (63), Expect = 6.0 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 4/41 (9%) Frame = -2 Query: 125 NKRGWRWTEDGKGIRLDG----ASGDRVRSVSRRWGPAGRR 15 N +GW W E+G R++G D++R +R W PAG R Sbjct: 283 NGQGWTWEENGFN-RIEGLWPPPDPDKLRRAARGW-PAGNR 321
>FMT_RAT (Q5I0C5) Methionyl-tRNA formyltransferase, mitochondrial precursor| (EC 2.1.2.9) (MtFMT) Length = 385 Score = 28.9 bits (63), Expect = 6.0 Identities = 15/35 (42%), Positives = 20/35 (57%) Frame = -2 Query: 212 WLAGKIGACLLQIPAGGDGKWRCGNQMKSNKRGWR 108 WLAG+ C Q PAG GK R ++++ K WR Sbjct: 11 WLAGRRPRCSCQSPAGFSGKDRRSSRVR-EKPPWR 44
>ICP4_GAHVG (Q02362) Trans-acting transcriptional activator protein ICP4| (Immediate-early protein IE175) Length = 1415 Score = 28.9 bits (63), Expect = 6.0 Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 5/85 (5%) Frame = +2 Query: 26 PAPTSATRSARDLHSLRPAGSPSHPQS----IAIPSCLISFDSRISTFHLRR-PGSEASK 190 P TS+ RS S RP G + P + I+ P S + + H+ R P S +S Sbjct: 110 PHTTSSPRS-----SPRPRGPETSPSNEHIIISPPRNPPSNTTHRNVGHVSRSPSSSSSS 164 Query: 191 LRSCQPASGHVFLVGQPQRSHRPRP 265 S P+S + ++ P S P P Sbjct: 165 SSSSSPSSSSLIVLSSPSSSRSPSP 189
>BXA1_SAMCY (P33718) Bombyxin A-1 homolog precursor [Contains: Bombyxin A-1| homolog B chain; Bombyxin A-1 homolog A chain] Length = 99 Score = 28.9 bits (63), Expect = 6.0 Identities = 11/20 (55%), Positives = 13/20 (65%) Frame = -2 Query: 116 GWRWTEDGKGIRLDGASGDR 57 GWRW E + +LDGA G R Sbjct: 59 GWRWLEPQRARQLDGARGKR 78
>HTPG_NITWN (Q3SNS6) Chaperone protein htpG (Heat shock protein htpG) (High| temperature protein G) Length = 637 Score = 25.0 bits (53), Expect(2) = 7.5 Identities = 7/12 (58%), Positives = 9/12 (75%) Frame = -2 Query: 122 KRGWRWTEDGKG 87 + WRW+ DGKG Sbjct: 155 REAWRWSSDGKG 166 Score = 21.9 bits (45), Expect(2) = 7.5 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 3/45 (6%) Frame = -3 Query: 271 EKRPRSVTSLGLS---DEEDMAAGWLARSELACFRSRPAEMESGD 146 E+R +V G+ DE A G +ARS F + ESGD Sbjct: 79 ERRQLAVEDNGIGMGRDELVDALGTIARSGTKAFIEQAEAAESGD 123
>PRTP_MCMVS (P30674) Probable processing and transport protein (Infected cell| protein 18.5) Length = 798 Score = 28.5 bits (62), Expect = 7.9 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%) Frame = -1 Query: 147 MRESNEI--KQEGMAMD*GWEGDPAGRSEWRSRAERVAEVGAGWQAAAGAS 1 + ESNEI K + + + GD RSRAE + GAG + AGA+ Sbjct: 391 LHESNEIYAKIKSLIEEIRGVGDGPAAGAARSRAEAASGAGAGGEEGAGAA 441 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,116,360 Number of Sequences: 219361 Number of extensions: 897165 Number of successful extensions: 3883 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 3703 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3873 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2677159704 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
