>K0220_HUMAN (Q92617) Protein KIAA0220 (Fragment)|
          Length = 884

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
 Frame = +2

Query: 5   HQPPRLVSSRSVSLFPFPFRLALHPR----PHALPAMCGG 112
           H  P ++S    S+   PF   LHP+       LP++CGG
Sbjct: 454 HHQPMIISRHLPSVSSLPFHPQLHPQQMIISRHLPSVCGG 493

>ICP4_HHV11 (P08392) Trans-acting transcriptional protein ICP4 (Transcriptional|
            activator IE175) (Alpha-4 protein)
          Length = 1298

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 23/56 (41%), Positives = 25/56 (44%), Gaps = 14/56 (25%)
 Frame = +2

Query: 44   LFPFPFRLALHPRPHAL--------------PAMCGGAILSDIIPPPRRAAGGRLW 169
            LFP P+R AL   P AL               A CGG    D  P P  AAGGRL+
Sbjct: 849  LFPVPWRPALMFDPRALASIAARCAGPAPAAQAACGGGD-DDDNPHPHGAAGGRLF 903

>YWIS_WHEAT (P14723) Hypothetical 16 kDa protein in middle repetitive insertion|
           sequence WIS1
          Length = 151

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 4/27 (14%)
 Frame = +2

Query: 11  PPRLVSSRSVSLFPFPF----RLALHP 79
           PP    S S+SL PFPF    RLAL+P
Sbjct: 66  PPPPTPSPSISLLPFPFSDGPRLALNP 92

>AP23_ARATH (P42736) AP2 domain transcription factor RAP2.3 (Related to AP2|
           protein 3) (Cadmium-induced protein AS30)
          Length = 248

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +2

Query: 101 MCGGAILSDIIPPPRRAAGGRL 166
           MCGGAI+SD  P   +A G +L
Sbjct: 1   MCGGAIISDYAPLVTKAKGRKL 22

>LIPM_NEIMB (Q05013) Capsule polysaccharide modification protein lipA|
          Length = 704

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 86  HALPAMCGGAILSDIIPPPRRAAGGRLWQ 172
           + LP   G  +  D++P PRR+    LWQ
Sbjct: 613 YGLPFYAGWGLTQDLLPIPRRSRRLELWQ 641

>LIPM_NEIMA (P57037) Capsule polysaccharide modification protein lipA|
          Length = 704

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 86  HALPAMCGGAILSDIIPPPRRAAGGRLWQ 172
           + LP   G  +  D++P PRR+    LWQ
Sbjct: 613 YGLPFYAGWGLTQDLLPIPRRSRRLELWQ 641

>CQ039_HUMAN (Q8IVV7) Protein C17orf39|
          Length = 300

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 8/52 (15%)
 Frame = +2

Query: 11  PPRLVSSRSVSLFPFPFRLALHPRPHAL--------PAMCGGAILSDIIPPP 142
           P  L+ SR+ +  P P   AL P   A+        PA    A  + +IPPP
Sbjct: 57  PATLLGSRAAAAVPLPLPPALAPGDPAMPVRTECPPPAGASAASAASLIPPP 108

>GATA_PROMA (Q7VCJ0) Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.-)|
           (Glu-ADT subunit A)
          Length = 486

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +2

Query: 56  PFRLALHPRPHALPAMCGGAILSDIIPPPRRAAGGRLWQA 175
           PF +  +     +P  C   +L + IPP       RLW+A
Sbjct: 70  PFAIKDNLCTKGIPTTCSSKMLEEFIPPYESTVTQRLWKA 109


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,183,479
Number of Sequences: 219361
Number of extensions: 434044
Number of successful extensions: 1559
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1559
length of database: 80,573,946
effective HSP length: 110
effective length of database: 56,444,236
effective search space used: 1354661664
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)