ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast52e04 |
|---|---|
| Clone Library Name | barley_pub |
>FBRL_CANGA (Q6FN88) Fibrillarin| Length = 323 Score = 72.4 bits (176), Expect = 2e-13 Identities = 33/44 (75%), Positives = 36/44 (81%) Frame = +1 Query: 277 GMKGGAKVVVVPHKHDGVFIAKAMEDALCTKNMVAGESVYGEKR 408 G KGGAKVV+ PHKHDGV+IA+ ED L TKNM GESVYGEKR Sbjct: 75 GAKGGAKVVIEPHKHDGVYIARGKEDLLVTKNMAPGESVYGEKR 118
>FBRL2_ARATH (Q94AH9) Fibrillarin-2 (Fibrillarin-like protein)| Length = 320 Score = 70.5 bits (171), Expect = 9e-13 Identities = 32/44 (72%), Positives = 37/44 (84%) Frame = +1 Query: 277 GMKGGAKVVVVPHKHDGVFIAKAMEDALCTKNMVAGESVYGEKR 408 GMKGG+KV+V PH+H GVFIAK EDAL TKN+V GE+VY EKR Sbjct: 73 GMKGGSKVIVEPHRHAGVFIAKGKEDALVTKNLVPGEAVYNEKR 116
>FBRL1_ARATH (Q9FEF8) Fibrillarin-1 (SKP1-interacting partner 7)| Length = 308 Score = 70.5 bits (171), Expect = 9e-13 Identities = 32/44 (72%), Positives = 37/44 (84%) Frame = +1 Query: 277 GMKGGAKVVVVPHKHDGVFIAKAMEDALCTKNMVAGESVYGEKR 408 GMKGG+KV+V PH+H GVFIAK EDAL TKN+V GE+VY EKR Sbjct: 62 GMKGGSKVIVEPHRHAGVFIAKGKEDALVTKNLVPGEAVYNEKR 105
>FBRL_ASHGO (Q756P0) Fibrillarin| Length = 326 Score = 68.9 bits (167), Expect = 3e-12 Identities = 32/44 (72%), Positives = 35/44 (79%) Frame = +1 Query: 277 GMKGGAKVVVVPHKHDGVFIAKAMEDALCTKNMVAGESVYGEKR 408 G KGGAKVV+ PHKH GVFIA+ ED L TKN+ GESVYGEKR Sbjct: 80 GAKGGAKVVIEPHKHAGVFIARGKEDLLVTKNVAPGESVYGEKR 123
>FBRL_YEAST (P15646) Fibrillarin (Nucleolar protein 1)| Length = 327 Score = 67.0 bits (162), Expect = 1e-11 Identities = 30/44 (68%), Positives = 35/44 (79%) Frame = +1 Query: 277 GMKGGAKVVVVPHKHDGVFIAKAMEDALCTKNMVAGESVYGEKR 408 G +GGAKVV+ PH+H GV+IA+ ED L TKNM GESVYGEKR Sbjct: 79 GARGGAKVVIEPHRHAGVYIARGKEDLLVTKNMAPGESVYGEKR 122
>FBRL_CAEEL (Q22053) Fibrillarin| Length = 352 Score = 66.6 bits (161), Expect = 1e-11 Identities = 32/44 (72%), Positives = 34/44 (77%) Frame = +1 Query: 277 GMKGGAKVVVVPHKHDGVFIAKAMEDALCTKNMVAGESVYGEKR 408 GM+GG VVV PH+ GVFI K EDAL TKNMV GESVYGEKR Sbjct: 110 GMRGGKTVVVEPHRLGGVFIVKGKEDALATKNMVVGESVYGEKR 153
>FBRL_SCHPO (P35551) Fibrillarin| Length = 305 Score = 65.9 bits (159), Expect = 2e-11 Identities = 29/44 (65%), Positives = 35/44 (79%) Frame = +1 Query: 277 GMKGGAKVVVVPHKHDGVFIAKAMEDALCTKNMVAGESVYGEKR 408 G KGGAKV++ PH+H GVFIA+ ED L T+N+V GESVY EKR Sbjct: 66 GAKGGAKVIIEPHRHAGVFIARGKEDLLVTRNLVPGESVYNEKR 109
>FBRL_DEBHA (Q6BQ34) Fibrillarin| Length = 329 Score = 65.5 bits (158), Expect = 3e-11 Identities = 29/44 (65%), Positives = 35/44 (79%) Frame = +1 Query: 277 GMKGGAKVVVVPHKHDGVFIAKAMEDALCTKNMVAGESVYGEKR 408 G +GGAKVV+ PH+H GVFIA+ ED L T+N+ GESVYGEKR Sbjct: 81 GARGGAKVVIEPHRHAGVFIARGKEDLLVTRNIAPGESVYGEKR 124
>FBRL3_ARATH (Q9FHB3) Putative fibrillarin-3| Length = 292 Score = 65.1 bits (157), Expect = 4e-11 Identities = 28/44 (63%), Positives = 36/44 (81%) Frame = +1 Query: 277 GMKGGAKVVVVPHKHDGVFIAKAMEDALCTKNMVAGESVYGEKR 408 G+KGG+KV+V PH+H GVF+AK+ DAL TKN+V GE +Y EKR Sbjct: 52 GIKGGSKVLVTPHRHAGVFVAKSKADALVTKNLVPGEIIYNEKR 95
>FBRL_XENLA (P22232) Fibrillarin| Length = 323 Score = 64.7 bits (156), Expect = 5e-11 Identities = 28/44 (63%), Positives = 34/44 (77%) Frame = +1 Query: 277 GMKGGAKVVVVPHKHDGVFIAKAMEDALCTKNMVAGESVYGEKR 408 G G KV+V PH+H+G+FI + EDAL TKN+V GESVYGEKR Sbjct: 81 GFGAGRKVIVEPHRHEGIFICRGKEDALVTKNLVPGESVYGEKR 124
>FBRL_RAT (P22509) Fibrillarin (Nucleolar protein 1)| Length = 327 Score = 62.8 bits (151), Expect = 2e-10 Identities = 28/44 (63%), Positives = 34/44 (77%) Frame = +1 Query: 277 GMKGGAKVVVVPHKHDGVFIAKAMEDALCTKNMVAGESVYGEKR 408 G + G V+V PH+H+GVFI + EDAL TKN+V GESVYGEKR Sbjct: 85 GNQSGKNVMVEPHRHEGVFICRGKEDALVTKNLVPGESVYGEKR 128
>FBRL_MOUSE (P35550) Fibrillarin (Nucleolar protein 1)| Length = 327 Score = 62.8 bits (151), Expect = 2e-10 Identities = 28/44 (63%), Positives = 34/44 (77%) Frame = +1 Query: 277 GMKGGAKVVVVPHKHDGVFIAKAMEDALCTKNMVAGESVYGEKR 408 G + G V+V PH+H+GVFI + EDAL TKN+V GESVYGEKR Sbjct: 85 GNQSGKNVMVEPHRHEGVFICRGKEDALVTKNLVPGESVYGEKR 128
>FBRL_HUMAN (P22087) Fibrillarin (34 kDa nucleolar scleroderma antigen)| Length = 321 Score = 62.8 bits (151), Expect = 2e-10 Identities = 28/44 (63%), Positives = 34/44 (77%) Frame = +1 Query: 277 GMKGGAKVVVVPHKHDGVFIAKAMEDALCTKNMVAGESVYGEKR 408 G + G V+V PH+H+GVFI + EDAL TKN+V GESVYGEKR Sbjct: 79 GNQSGKNVMVEPHRHEGVFICRGKEDALVTKNLVPGESVYGEKR 122
>FBRL_DROER (Q8I1F4) Fibrillarin| Length = 345 Score = 62.4 bits (150), Expect = 2e-10 Identities = 27/44 (61%), Positives = 32/44 (72%) Frame = +1 Query: 277 GMKGGAKVVVVPHKHDGVFIAKAMEDALCTKNMVAGESVYGEKR 408 G KGG V + PH+H+GVFIA+ EDAL T+N V G VYGEKR Sbjct: 105 GFKGGKTVTIEPHRHEGVFIARGKEDALVTRNFVPGSEVYGEKR 148
>FBRL_DROME (Q9W1V3) Fibrillarin| Length = 344 Score = 62.4 bits (150), Expect = 2e-10 Identities = 27/44 (61%), Positives = 32/44 (72%) Frame = +1 Query: 277 GMKGGAKVVVVPHKHDGVFIAKAMEDALCTKNMVAGESVYGEKR 408 G KGG V + PH+H+GVFIA+ EDAL T+N V G VYGEKR Sbjct: 104 GFKGGKTVTIEPHRHEGVFIARGKEDALVTRNFVPGSEVYGEKR 147
>FBRL_NEUCR (Q9HE26) Fibrillarin| Length = 323 Score = 57.4 bits (137), Expect = 8e-09 Identities = 30/48 (62%), Positives = 35/48 (72%), Gaps = 4/48 (8%) Frame = +1 Query: 277 GMKGGA---KVVVVPHKHDGVFIAKA-MEDALCTKNMVAGESVYGEKR 408 G KGGA KV+V PH+H GVF+A+ ED L T N+V GESVYGEKR Sbjct: 70 GAKGGAAGKKVIVEPHRHKGVFVARGGKEDLLATVNLVPGESVYGEKR 117
>FBRL_LEIMA (P35549) Fibrillarin| Length = 297 Score = 57.4 bits (137), Expect = 8e-09 Identities = 29/41 (70%), Positives = 32/41 (78%), Gaps = 1/41 (2%) Frame = +1 Query: 289 GAKVVVVPHK-HDGVFIAKAMEDALCTKNMVAGESVYGEKR 408 GAKV+V PH H GVFI+KA D+LCT NMV G SVYGEKR Sbjct: 56 GAKVIVEPHMLHPGVFISKAKTDSLCTLNMVPGISVYGEKR 96
>FBRL_GIALA (Q24957) Fibrillarin| Length = 327 Score = 52.8 bits (125), Expect = 2e-07 Identities = 25/45 (55%), Positives = 32/45 (71%), Gaps = 1/45 (2%) Frame = +1 Query: 277 GMKGGAKVVVVPH-KHDGVFIAKAMEDALCTKNMVAGESVYGEKR 408 G KGGAK +V PH K+DG+FI+ D L TK++ G +VYGEKR Sbjct: 87 GFKGGAKTMVKPHPKYDGIFISHGRGDVLVTKSLAPGVAVYGEKR 131
>FBRL_TETTH (Q27200) Fibrillarin| Length = 294 Score = 51.6 bits (122), Expect = 4e-07 Identities = 25/46 (54%), Positives = 31/46 (67%), Gaps = 2/46 (4%) Frame = +1 Query: 277 GMKG--GAKVVVVPHKHDGVFIAKAMEDALCTKNMVAGESVYGEKR 408 G KG G K ++V H+ +GVFI K ++AL TKN GESVY EKR Sbjct: 56 GAKGPRGPKTIIVKHRLEGVFICKGQQEALVTKNFFPGESVYNEKR 101
>FBRL_ENCCU (Q8SR42) Fibrillarin| Length = 291 Score = 45.1 bits (105), Expect = 4e-05 Identities = 22/39 (56%), Positives = 29/39 (74%), Gaps = 1/39 (2%) Frame = +1 Query: 295 KVVVVPH-KHDGVFIAKAMEDALCTKNMVAGESVYGEKR 408 KV+V PH + GV+I++ ED L T+N+V G SVYGEKR Sbjct: 46 KVLVEPHPRFPGVYISRGKEDLLLTRNLVPGVSVYGEKR 84
>FLPA_PYRAE (Q8ZTI9) Fibrillarin-like pre-rRNA-processing protein| Length = 235 Score = 31.2 bits (69), Expect = 0.61 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 3/39 (7%) Frame = +1 Query: 298 VVVVPH-KHDGVFIAKAME--DALCTKNMVAGESVYGEK 405 V V PH +H GV++ K + + + TKN+ G VYGE+ Sbjct: 6 VEVKPHERHYGVYVVKFEDGTERIATKNLTPGRRVYGER 44
>FLPA_PYRAB (Q9V2L5) Fibrillarin-like pre-rRNA-processing protein| Length = 227 Score = 30.4 bits (67), Expect = 1.0 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 2/38 (5%) Frame = +1 Query: 298 VVVVPHKHDGVFIAKAME--DALCTKNMVAGESVYGEK 405 V V HK GV+I + + + TKN+V G+ VYGE+ Sbjct: 2 VEVKKHKFPGVYIVIDDDGSEKIATKNLVPGQRVYGER 39
>FLPA_PYRFU (Q8U4M2) Fibrillarin-like pre-rRNA-processing protein| Length = 227 Score = 30.0 bits (66), Expect = 1.4 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%) Frame = +1 Query: 298 VVVVPHKHDGVFIAKAME--DALCTKNMVAGESVYGEK 405 V V HK GV++ + + + TKN+V G+ VYGE+ Sbjct: 2 VEVKKHKFPGVYVVIDDDGSEKIATKNLVPGQRVYGER 39
>FLPA_PYRHO (O57811) Fibrillarin-like pre-rRNA-processing protein| Length = 227 Score = 29.6 bits (65), Expect = 1.8 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%) Frame = +1 Query: 298 VVVVPHKHDGVF--IAKAMEDALCTKNMVAGESVYGEK 405 V V HK GV+ I + + TKN+V G+ VYGE+ Sbjct: 2 VEVKKHKFPGVYTVIDDDGSERIATKNLVPGQRVYGER 39
>FLPA_AERPE (Q9Y9U3) Fibrillarin-like pre-rRNA-processing protein| Length = 233 Score = 29.3 bits (64), Expect = 2.3 Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 5/40 (12%) Frame = +1 Query: 301 VVVPHKHD---GVFIAKAMEDAL--CTKNMVAGESVYGEK 405 VV +HD GV++ + + +L TKN+V G+ VYGE+ Sbjct: 4 VVSVREHDRWRGVYVVELEDGSLRIATKNLVPGQRVYGER 43
>DPO1_HAEIN (P43741) DNA polymerase I (EC 2.7.7.7) (POL I)| Length = 930 Score = 28.9 bits (63), Expect = 3.0 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 9/47 (19%) Frame = -1 Query: 408 PLLAVDGLAGDHVLGT---------ERVLHGLGDEDAVVLVGHDDHL 295 PLL V+G+ D V+GT ++VL GD+D LV DD++ Sbjct: 105 PLLVVEGIEADDVIGTLALQASSLGKKVLISTGDKDMAQLV--DDNI 149
>FLPA_PYRKO (Q5JFN1) Fibrillarin-like pre-rRNA-processing protein| Length = 226 Score = 28.5 bits (62), Expect = 4.0 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%) Frame = +1 Query: 304 VVPHKHDGVFIAKAME--DALCTKNMVAGESVYGEK 405 V H+ GV+I + + + TKN+V G+ VYGE+ Sbjct: 3 VKKHRFPGVYIVIDDDGSEKIATKNLVPGQRVYGER 38
>FLPA_SULTO (Q971W2) Fibrillarin-like pre-rRNA-processing protein| Length = 233 Score = 28.1 bits (61), Expect = 5.2 Identities = 11/16 (68%), Positives = 13/16 (81%) Frame = +1 Query: 358 LCTKNMVAGESVYGEK 405 LCTKN+ G SVYGE+ Sbjct: 27 LCTKNLAPGFSVYGER 42
>NK2R_RAT (P16610) Substance-K receptor (SKR) (Neurokinin A receptor) (NK-2| receptor) (NK-2R) (Tachykinin receptor 2) Length = 390 Score = 27.3 bits (59), Expect = 8.9 Identities = 11/35 (31%), Positives = 19/35 (54%) Frame = -2 Query: 404 FSP*TDSPATMFLVQSASSMALAMKTPSCLWGTTT 300 F P +P+T ++ +ALA+ +P C + T T Sbjct: 139 FQPRLSAPSTKAIIAGIWLVALALASPQCFYSTIT 173
>NK2R_BOVIN (P05363) Substance-K receptor (SKR) (Neurokinin A receptor) (NK-2| receptor) (NK-2R) (Tachykinin receptor 2) Length = 384 Score = 27.3 bits (59), Expect = 8.9 Identities = 12/36 (33%), Positives = 18/36 (50%) Frame = -2 Query: 404 FSP*TDSPATMFLVQSASSMALAMKTPSCLWGTTTT 297 F P +P T ++ +ALA+ P C + T TT Sbjct: 139 FQPRLSAPGTRAVIAGIWLVALALAFPQCFYSTITT 174
>FLPA_SULAC (Q9P9M0) Fibrillarin-like pre-rRNA-processing protein| Length = 231 Score = 27.3 bits (59), Expect = 8.9 Identities = 10/16 (62%), Positives = 13/16 (81%) Frame = +1 Query: 358 LCTKNMVAGESVYGEK 405 LCTKN+ G +VYGE+ Sbjct: 27 LCTKNLSPGHNVYGER 42
>NK2R_HUMAN (P21452) Substance-K receptor (SKR) (Neurokinin A receptor) (NK-2| receptor) (NK-2R) (Tachykinin receptor 2) Length = 398 Score = 27.3 bits (59), Expect = 8.9 Identities = 11/35 (31%), Positives = 19/35 (54%) Frame = -2 Query: 404 FSP*TDSPATMFLVQSASSMALAMKTPSCLWGTTT 300 F P +P+T ++ +ALA+ +P C + T T Sbjct: 139 FQPRLSAPSTKAVIAGIWLVALALASPQCFYSTVT 173 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 26,182,674 Number of Sequences: 219361 Number of extensions: 269629 Number of successful extensions: 836 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 829 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 834 length of database: 80,573,946 effective HSP length: 111 effective length of database: 56,224,875 effective search space used: 1349397000 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
