Clone Information

BLAST Search Result

Clone Name	bast52c06
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	SMT3_ORYSA (P55857) Ubiquitin-like protein SMT3	179	4e-45
2	SMT3_ARATH (P55852) Ubiquitin-like protein SMT3	166	3e-41
3	PMT3_SCHPO (O13351) Ubiquitin-like protein pmt3/smt3 precursor	112	4e-25
4	SUMO3_MOUSE (Q9Z172) Small ubiquitin-related modifier 3 precurso...	91	1e-18
5	SUMO3_HUMAN (P55854) Small ubiquitin-related modifier 3 precurso...	91	2e-18
6	SUMO2_RAT (P61959) Small ubiquitin-related modifier 2 precursor ...	90	2e-18
7	SUMO2_PIG (P61958) Small ubiquitin-related modifier 2 precursor ...	90	2e-18
8	SUMO2_MOUSE (P61957) Small ubiquitin-related modifier 2 precurso...	90	2e-18
9	SUMO2_HUMAN (P61956) Small ubiquitin-related modifier 2 precurso...	90	2e-18
10	SUMO2_CRIGR (Q6LDZ8) Small ubiquitin-related modifier 2 precurso...	90	2e-18
11	SUMO2_BOVIN (P61955) Small ubiquitin-related modifier 2 precurso...	90	2e-18
12	SUMO1_PONPY (Q5R6J4) Small ubiquitin-related modifier 1 precurso...	90	3e-18
13	SUMO1_MOUSE (P63166) Small ubiquitin-related modifier 1 precurso...	90	3e-18
14	SUMO1_HUMAN (P63165) Small ubiquitin-related modifier 1 precurso...	90	3e-18
15	SUMO1_BOVIN (Q5E9D1) Small ubiquitin-related modifier 1 precurso...	90	3e-18
16	SUMO1_CERNI (Q9MZD5) Small ubiquitin-related modifier 1 precurso...	89	4e-18
17	SMT3_CAEEL (P55853) Ubiquitin-like protein SMT3	86	5e-17
18	SUMO4_HUMAN (Q6EEV6) Small ubiquitin-related modifier 4 precurso...	82	9e-16
19	SMT3_YEAST (Q12306) Ubiquitin-like protein SMT3 precursor	79	4e-15
20	ESC2_YEAST (Q06340) Protein ESC2 (Establishes silent chromatin p...	35	0.12
21	GLNA4_PEA (Q43066) Glutamine synthetase root isozyme B (EC 6.3.1...	35	0.12
22	GLNA3_PEA (P07694) Glutamine synthetase root isozyme A (EC 6.3.1...	33	0.28
23	GLNA1_ALNGL (O04867) Glutamine synthetase (EC 6.3.1.2) (Glutamat...	33	0.28
24	DRS1_KLULA (Q6CJV1) ATP-dependent RNA helicase DRS1 (EC 3.6.1.-)	33	0.36
25	DLX2_HUMAN (Q07687) Homeobox protein DLX-2	32	0.80
26	GLN13_ARATH (Q9LVI8) Glutamine synthetase cytosolic isozyme 1-3 ...	31	1.4
27	PKD2_MOUSE (O35245) Polycystin-2	31	1.8
28	GLNA1_VITVI (P51118) Glutamine synthetase cytosolic isozyme 1 (E...	30	3.1
29	ESC2_ASHGO (Q756K3) Protein ESC2 (Establishes silent chromatin p...	30	4.0
30	FARP1_PONPY (Q5RAB8) FERM, RhoGEF and pleckstrin domain-containi...	30	4.0
31	FARP1_HUMAN (Q9Y4F1) FERM, RhoGEF and pleckstrin domain-containi...	30	4.0
32	SNF7_NEUCR (Q871Y8) Vacuolar sorting protein snf-7 (Vacuolar pro...	29	5.2
33	AROC_METAC (Q8TT87) Chorismate synthase (EC 4.2.3.5) (5-enolpyru...	29	5.2
34	MARCS_HUMAN (P29966) Myristoylated alanine-rich C-kinase substra...	29	6.8
35	ZFP59_MOUSE (P16373) Zinc finger protein 59 (Zfp-59) (Zinc finge...	29	6.8
36	L_NDVB (P11205) Large structural protein (Protein L) (Transcript...	29	6.8
37	ATG2_YEAST (P53855) Autophagy-related protein 2 (Sporulation-spe...	29	6.8
38	CK5P1_DROME (Q9VGZ1) CDK5RAP1-like protein	29	6.8
39	SYFA_SYNY3 (Q55187) Phenylalanyl-tRNA synthetase alpha chain (EC...	28	8.9

>SMT3_ORYSA (P55857) Ubiquitin-like protein SMT3|
          Length = 100

 Score =  179 bits (453), Expect = 4e-45
 Identities = 86/92 (93%), Positives = 91/92 (98%), Gaps = 1/92 (1%)
 Frame = +3

Query: 129 DEDKKPAG-DGGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLF 305
           +EDKKPAG +GGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVD+N+IAFLF
Sbjct: 6   EEDKKPAGGEGGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDMNAIAFLF 65

Query: 306 DGRRLRGEQTPDELEMEEGDEIDAMLHQTGGC 401
           DGRRLRGEQTPDELEME+GDEIDAMLHQTGGC
Sbjct: 66  DGRRLRGEQTPDELEMEDGDEIDAMLHQTGGC 97

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>SMT3_ARATH (P55852) Ubiquitin-like protein SMT3|
          Length = 100

 Score =  166 bits (420), Expect = 3e-41
 Identities = 83/90 (92%), Positives = 87/90 (96%)
 Frame = +3

Query: 129 DEDKKPAGDGGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFD 308
           +EDKKP GDGG AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVD+NSIAFLFD
Sbjct: 6   EEDKKP-GDGG-AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDMNSIAFLFD 63

Query: 309 GRRLRGEQTPDELEMEEGDEIDAMLHQTGG 398
           GRRLR EQTPDEL+ME+GDEIDAMLHQTGG
Sbjct: 64  GRRLRAEQTPDELDMEDGDEIDAMLHQTGG 93

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>PMT3_SCHPO (O13351) Ubiquitin-like protein pmt3/smt3 precursor|
          Length = 117

 Score =  112 bits (281), Expect = 4e-25
 Identities = 53/96 (55%), Positives = 71/96 (73%)
 Frame = +3

Query: 114 SGVTADEDKKPAGDGGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSI 293
           +G T+ +D KP+ +    HINLKV GQD NEVFF+IK++T+  KLM  YC RQ   +NS+
Sbjct: 21  TGDTSQQDVKPSTE----HINLKVVGQDNNEVFFKIKKTTEFSKLMKIYCARQGKSMNSL 76

Query: 294 AFLFDGRRLRGEQTPDELEMEEGDEIDAMLHQTGGC 401
            FL DG R+R +QTP EL+ME+GD+I+A+L Q GGC
Sbjct: 77  RFLVDGERIRPDQTPAELDMEDGDQIEAVLEQLGGC 112

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>SUMO3_MOUSE (Q9Z172) Small ubiquitin-related modifier 3 precursor (SUMO-3)|
           (Ubiquitin-like protein SMT3A) (SMT3 homolog 1)
          Length = 110

 Score = 90.9 bits (224), Expect = 1e-18
 Identities = 50/106 (47%), Positives = 62/106 (58%)
 Frame = +3

Query: 93  TEESPEMSGVTADEDKKPAGDGGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQ 272
           +EE P+  GV  + D          HINLKV GQDG+ V F+IKR T L KLM AYC+RQ
Sbjct: 2   SEEKPK-EGVKTEND----------HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQ 50

Query: 273 SVDLNSIAFLFDGRRLRGEQTPDELEMEEGDEIDAMLHQTGGCFRR 410
            + +  I F FDG+ +    TP +LEME+ D ID    QTGG   R
Sbjct: 51  GLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGSASR 96

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>SUMO3_HUMAN (P55854) Small ubiquitin-related modifier 3 precursor (SUMO-3)|
           (Ubiquitin-like protein SMT3A) (SMT3 homolog 1)
          Length = 103

 Score = 90.5 bits (223), Expect = 2e-18
 Identities = 49/102 (48%), Positives = 61/102 (59%)
 Frame = +3

Query: 93  TEESPEMSGVTADEDKKPAGDGGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQ 272
           +EE P+  GV  + D          HINLKV GQDG+ V F+IKR T L KLM AYC+RQ
Sbjct: 2   SEEKPK-EGVKTEND----------HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQ 50

Query: 273 SVDLNSIAFLFDGRRLRGEQTPDELEMEEGDEIDAMLHQTGG 398
            + +  I F FDG+ +    TP +LEME+ D ID    QTGG
Sbjct: 51  GLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 92

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>SUMO2_RAT (P61959) Small ubiquitin-related modifier 2 precursor (SUMO-2)|
           (Ubiquitin-like protein SMT3B) (SMT3 homolog 2)
           (Sentrin-2)
          Length = 95

 Score = 90.1 bits (222), Expect = 2e-18
 Identities = 43/79 (54%), Positives = 53/79 (67%)
 Frame = +3

Query: 168 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFDGRRLRGEQTPDEL 347
           HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +L
Sbjct: 17  HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQL 76

Query: 348 EMEEGDEIDAMLHQTGGCF 404
           EME+ D ID    QTGG +
Sbjct: 77  EMEDEDTIDVFQQQTGGVY 95

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>SUMO2_PIG (P61958) Small ubiquitin-related modifier 2 precursor (SUMO-2)|
           (Ubiquitin-like protein SMT3B) (SMT3 homolog 2)
           (Sentrin-2) (MIF2 suppressor)
          Length = 95

 Score = 90.1 bits (222), Expect = 2e-18
 Identities = 43/79 (54%), Positives = 53/79 (67%)
 Frame = +3

Query: 168 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFDGRRLRGEQTPDEL 347
           HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +L
Sbjct: 17  HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQL 76

Query: 348 EMEEGDEIDAMLHQTGGCF 404
           EME+ D ID    QTGG +
Sbjct: 77  EMEDEDTIDVFQQQTGGVY 95

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>SUMO2_MOUSE (P61957) Small ubiquitin-related modifier 2 precursor (SUMO-2)|
           (Ubiquitin-like protein SMT3B) (SMT3 homolog 2)
           (Sentrin-2)
          Length = 95

 Score = 90.1 bits (222), Expect = 2e-18
 Identities = 43/79 (54%), Positives = 53/79 (67%)
 Frame = +3

Query: 168 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFDGRRLRGEQTPDEL 347
           HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +L
Sbjct: 17  HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQL 76

Query: 348 EMEEGDEIDAMLHQTGGCF 404
           EME+ D ID    QTGG +
Sbjct: 77  EMEDEDTIDVFQQQTGGVY 95

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>SUMO2_HUMAN (P61956) Small ubiquitin-related modifier 2 precursor (SUMO-2)|
           (Ubiquitin-like protein SMT3B) (SMT3 homolog 2)
           (Sentrin-2) (HSMT3)
          Length = 95

 Score = 90.1 bits (222), Expect = 2e-18
 Identities = 43/79 (54%), Positives = 53/79 (67%)
 Frame = +3

Query: 168 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFDGRRLRGEQTPDEL 347
           HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +L
Sbjct: 17  HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQL 76

Query: 348 EMEEGDEIDAMLHQTGGCF 404
           EME+ D ID    QTGG +
Sbjct: 77  EMEDEDTIDVFQQQTGGVY 95

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>SUMO2_CRIGR (Q6LDZ8) Small ubiquitin-related modifier 2 precursor (SUMO-2)|
           (Ubiquitin-like protein SMT3B) (SMT3 homolog 2)
           (Sentrin-2) (MIF2 suppressor)
          Length = 95

 Score = 90.1 bits (222), Expect = 2e-18
 Identities = 43/79 (54%), Positives = 53/79 (67%)
 Frame = +3

Query: 168 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFDGRRLRGEQTPDEL 347
           HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +L
Sbjct: 17  HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQL 76

Query: 348 EMEEGDEIDAMLHQTGGCF 404
           EME+ D ID    QTGG +
Sbjct: 77  EMEDEDTIDVFQQQTGGVY 95

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>SUMO2_BOVIN (P61955) Small ubiquitin-related modifier 2 precursor (SUMO-2)|
           (Ubiquitin-like protein SMT3B) (SMT3 homolog 2)
           (Sentrin-2)
          Length = 95

 Score = 90.1 bits (222), Expect = 2e-18
 Identities = 43/79 (54%), Positives = 53/79 (67%)
 Frame = +3

Query: 168 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFDGRRLRGEQTPDEL 347
           HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +L
Sbjct: 17  HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQL 76

Query: 348 EMEEGDEIDAMLHQTGGCF 404
           EME+ D ID    QTGG +
Sbjct: 77  EMEDEDTIDVFQQQTGGVY 95

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>SUMO1_PONPY (Q5R6J4) Small ubiquitin-related modifier 1 precursor (SUMO-1)|
          Length = 101

 Score = 89.7 bits (221), Expect = 3e-18
 Identities = 44/96 (45%), Positives = 62/96 (64%), Gaps = 5/96 (5%)
 Frame = +3

Query: 126 ADEDKKPAGDG-----GGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNS 290
           +D++ KP+ +       G +I LKV GQD +E+ F++K +T LKKL  +YC RQ V +NS
Sbjct: 2   SDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNS 61

Query: 291 IAFLFDGRRLRGEQTPDELEMEEGDEIDAMLHQTGG 398
           + FLF+G+R+    TP EL MEE D I+    QTGG
Sbjct: 62  LRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97

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>SUMO1_MOUSE (P63166) Small ubiquitin-related modifier 1 precursor (SUMO-1)|
           (Ubiquitin-like protein SMT3C) (SMT3 homolog 3)
           (Ubiquitin-homology domain protein PIC1)
          Length = 101

 Score = 89.7 bits (221), Expect = 3e-18
 Identities = 44/96 (45%), Positives = 62/96 (64%), Gaps = 5/96 (5%)
 Frame = +3

Query: 126 ADEDKKPAGDG-----GGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNS 290
           +D++ KP+ +       G +I LKV GQD +E+ F++K +T LKKL  +YC RQ V +NS
Sbjct: 2   SDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNS 61

Query: 291 IAFLFDGRRLRGEQTPDELEMEEGDEIDAMLHQTGG 398
           + FLF+G+R+    TP EL MEE D I+    QTGG
Sbjct: 62  LRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97

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>SUMO1_HUMAN (P63165) Small ubiquitin-related modifier 1 precursor (SUMO-1)|
           (Ubiquitin-like protein SMT3C) (SMT3 homolog 3)
           (Ubiquitin-homology domain protein PIC1) (Ubiquitin-like
           protein UBL1) (GAP-modifying protein 1) (GMP1) (Sentrin)
          Length = 101

 Score = 89.7 bits (221), Expect = 3e-18
 Identities = 44/96 (45%), Positives = 62/96 (64%), Gaps = 5/96 (5%)
 Frame = +3

Query: 126 ADEDKKPAGDG-----GGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNS 290
           +D++ KP+ +       G +I LKV GQD +E+ F++K +T LKKL  +YC RQ V +NS
Sbjct: 2   SDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNS 61

Query: 291 IAFLFDGRRLRGEQTPDELEMEEGDEIDAMLHQTGG 398
           + FLF+G+R+    TP EL MEE D I+    QTGG
Sbjct: 62  LRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97

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>SUMO1_BOVIN (Q5E9D1) Small ubiquitin-related modifier 1 precursor (SUMO-1)|
          Length = 101

 Score = 89.7 bits (221), Expect = 3e-18
 Identities = 44/96 (45%), Positives = 62/96 (64%), Gaps = 5/96 (5%)
 Frame = +3

Query: 126 ADEDKKPAGDG-----GGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNS 290
           +D++ KP+ +       G +I LKV GQD +E+ F++K +T LKKL  +YC RQ V +NS
Sbjct: 2   SDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNS 61

Query: 291 IAFLFDGRRLRGEQTPDELEMEEGDEIDAMLHQTGG 398
           + FLF+G+R+    TP EL MEE D I+    QTGG
Sbjct: 62  LRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97

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>SUMO1_CERNI (Q9MZD5) Small ubiquitin-related modifier 1 precursor (SUMO-1)|
           (Sentrin)
          Length = 101

 Score = 89.4 bits (220), Expect = 4e-18
 Identities = 44/96 (45%), Positives = 62/96 (64%), Gaps = 5/96 (5%)
 Frame = +3

Query: 126 ADEDKKPAGDG-----GGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNS 290
           +D++ KP+ +       G +I LKV GQD +E+ F++K +T LKKL  +YC RQ V +NS
Sbjct: 2   SDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNS 61

Query: 291 IAFLFDGRRLRGEQTPDELEMEEGDEIDAMLHQTGG 398
           + FLF+G+R+    TP EL MEE D I+    QTGG
Sbjct: 62  LRFLFEGQRIADNHTPKELGMEEEDVIEVYHEQTGG 97

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>SMT3_CAEEL (P55853) Ubiquitin-like protein SMT3|
          Length = 91

 Score = 85.9 bits (211), Expect = 5e-17
 Identities = 43/89 (48%), Positives = 55/89 (61%)
 Frame = +3

Query: 132 EDKKPAGDGGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFDG 311
           +D   AGD    +I +KV GQD NEV FR+K  T + KL  +Y DR  V +NS+ FLFDG
Sbjct: 3   DDAAQAGDNA-EYIKIKVVGQDSNEVHFRVKYGTSMAKLKKSYADRTGVAVNSLRFLFDG 61

Query: 312 RRLRGEQTPDELEMEEGDEIDAMLHQTGG 398
           RR+  + TP  LEME+ D I+    Q GG
Sbjct: 62  RRINDDDTPKTLEMEDDDVIEVYQEQLGG 90

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>SUMO4_HUMAN (Q6EEV6) Small ubiquitin-related modifier 4 precursor (SUMO-4)|
           (Small ubiquitin-like protein 4)
          Length = 95

 Score = 81.6 bits (200), Expect = 9e-16
 Identities = 39/79 (49%), Positives = 50/79 (63%)
 Frame = +3

Query: 168 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFDGRRLRGEQTPDEL 347
           HINLKV GQDG+ V F+IKR T L KLM AYC+ + + +  I F F G+ + G   P +L
Sbjct: 17  HINLKVAGQDGSVVQFKIKRQTPLSKLMKAYCEPRGLSMKQIRFRFGGQPISGTDKPAQL 76

Query: 348 EMEEGDEIDAMLHQTGGCF 404
           EME+ D ID     TGG +
Sbjct: 77  EMEDEDTIDVFQQPTGGVY 95

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>SMT3_YEAST (Q12306) Ubiquitin-like protein SMT3 precursor|
          Length = 101

 Score = 79.3 bits (194), Expect = 4e-15
 Identities = 38/78 (48%), Positives = 59/78 (75%), Gaps = 1/78 (1%)
 Frame = +3

Query: 168 HINLKVKGQDGN-EVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFDGRRLRGEQTPDE 344
           HINLKV   DG+ E+FF+IK++T L++LM A+  RQ  +++S+ FL+DG R++ +QTP++
Sbjct: 23  HINLKVS--DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPED 80

Query: 345 LEMEEGDEIDAMLHQTGG 398
           L+ME+ D I+A   Q GG
Sbjct: 81  LDMEDNDIIEAHREQIGG 98

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>ESC2_YEAST (Q06340) Protein ESC2 (Establishes silent chromatin protein 2)|
          Length = 456

 Score = 34.7 bits (78), Expect = 0.12
 Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
 Frame = +3

Query: 171 INLKVKGQDGNEVFFRIKRSTQLKKLMNAY-CDRQSVDLNSIAFLFDGRRLRGEQTPDEL 347
           + + + GQD  +++  ++RST   K+   Y   +Q      +  LFD   L   +   + 
Sbjct: 384 MRIALMGQDNKKIYVHVRRSTPFSKIAEYYRIQKQLPQKTRVKLLFDHDELDMNECIADQ 443

Query: 348 EMEEGDEIDAML 383
           +ME+ D +D ++
Sbjct: 444 DMEDEDMVDVII 455

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>GLNA4_PEA (Q43066) Glutamine synthetase root isozyme B (EC 6.3.1.2)|
           (Glutamate--ammonia ligase) (Cytosolic GS3 B)
          Length = 357

 Score = 34.7 bits (78), Expect = 0.12
 Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
 Frame = +3

Query: 51  GPNPDLSSS----AARHSTEESPEMSGVTADEDKKP-AGD--GGGAHINLKVKGQDGNEV 209
           GP+  +S+     AAR+  E   E+SGV    D KP  GD  G GAH N   K    N  
Sbjct: 203 GPSVGISAGDEIWAARYILERITEISGVVVSFDPKPIPGDWNGAGAHANFSTKSMRENGG 262

Query: 210 FFRIKRSTQ 236
           +  IK++ +
Sbjct: 263 YEVIKKAIE 271

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>GLNA3_PEA (P07694) Glutamine synthetase root isozyme A (EC 6.3.1.2)|
           (Glutamate--ammonia ligase) (Cytosolic GS3 A)
          Length = 357

 Score = 33.5 bits (75), Expect = 0.28
 Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
 Frame = +3

Query: 51  GPNPDLSSS----AARHSTEESPEMSGVTADEDKKPA-GD--GGGAHINLKVKGQDGNEV 209
           GP+  +S+     AAR+  E   E++GV    D KP  GD  G GAH N   K    N  
Sbjct: 203 GPSVGISAGDEIWAARYILERITEIAGVVVSFDPKPIPGDWNGAGAHANFSTKSMRENGG 262

Query: 210 FFRIKRSTQ 236
           +  IK++ +
Sbjct: 263 YEVIKKAIE 271

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>GLNA1_ALNGL (O04867) Glutamine synthetase (EC 6.3.1.2) (Glutamate--ammonia|
           ligase) (GS(1))
          Length = 356

 Score = 33.5 bits (75), Expect = 0.28
 Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
 Frame = +3

Query: 51  GPNPDLSSS----AARHSTEESPEMSGVTADEDKKPA-GD--GGGAHINLKVKGQDGNEV 209
           GP+  +S+     AAR+  E   E++GV    D KP  GD  G GAH N   K    N  
Sbjct: 203 GPSVGISAGDEVWAARYILERITEIAGVVLSLDPKPIQGDWNGAGAHTNYSTKSMRNNGG 262

Query: 210 FFRIKRSTQ 236
           +  IK++ +
Sbjct: 263 YEIIKKAIE 271

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>DRS1_KLULA (Q6CJV1) ATP-dependent RNA helicase DRS1 (EC 3.6.1.-)|
          Length = 748

 Score = 33.1 bits (74), Expect = 0.36
 Identities = 30/118 (25%), Positives = 51/118 (43%)
 Frame = +3

Query: 60  PDLSSSAARHSTEESPEMSGVTADEDKKPAGDGGGAHINLKVKGQDGNEVFFRIKRSTQL 239
           PDL +S      E+ P  S  T ++ KK A    G+H++  V  +D N  F         
Sbjct: 24  PDLDASD--DEMEKKPVKSSKTKNKSKKKAKQQQGSHLDEDVH-EDLNPEF--------- 71

Query: 240 KKLMNAYCDRQSVDLNSIAFLFDGRRLRGEQTPDELEMEEGDEIDAMLHQTGGCFRRA 413
                    + S+D   +   F G   +G++  DE+E ++ D +D ++ + GG    A
Sbjct: 72  ---------QFSIDSGEVTTNFAGWDFQGDEKSDEVEKKDVD-LDGIIRRKGGLIMMA 119

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>DLX2_HUMAN (Q07687) Homeobox protein DLX-2|
          Length = 328

 Score = 32.0 bits (71), Expect = 0.80
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
 Frame = +3

Query: 39  GSPYGPNPDLSSSAARHSTEESPEMSGVTADE------DKKPAGDGGG 164
           G   GP  + SSS++ H  +ESP +   TA +       + PAG GGG
Sbjct: 32  GGGAGPGGNSSSSSSLHKPQESPTLPVSTATDSSYYTNQQHPAGGGGG 79

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>GLN13_ARATH (Q9LVI8) Glutamine synthetase cytosolic isozyme 1-3 (EC 6.3.1.2)|
           (GLN1;3) (Glutamate--ammonia ligase GLN1;3) (GS1)
          Length = 354

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 28/74 (37%), Positives = 32/74 (43%), Gaps = 10/74 (13%)
 Frame = +3

Query: 51  GPNPDLSSS----AARHSTEESPEMSGVTADEDKKPA-GD--GGGAHINLKVK---GQDG 200
           GP   +SS      AR+  E   E+SGV    D KP  GD  G GAH N   K      G
Sbjct: 203 GPVEGISSGDQVWVARYLLERITEISGVIVSFDPKPVPGDWNGAGAHCNYSTKTMRNDGG 262

Query: 201 NEVFFRIKRSTQLK 242
            EV  +     QLK
Sbjct: 263 LEVIKKAIGKLQLK 276

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>PKD2_MOUSE (O35245) Polycystin-2|
          Length = 966

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 14/55 (25%), Positives = 29/55 (52%)
 Frame = +3

Query: 39  GSPYGPNPDLSSSAARHSTEESPEMSGVTADEDKKPAGDGGGAHINLKVKGQDGN 203
           G+   P+P LSS + +  + ++P       D+D +  G+ GG  + + V+ + G+
Sbjct: 66  GASASPSPPLSSCSRQAWSRDNPGFEAEEDDDDDEVEGEEGGMVVEMDVEWRPGS 120

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>GLNA1_VITVI (P51118) Glutamine synthetase cytosolic isozyme 1 (EC 6.3.1.2)|
           (Glutamate--ammonia ligase)
          Length = 356

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 7/69 (10%)
 Frame = +3

Query: 51  GPNPDLSSS----AARHSTEESPEMSGVTADEDKKPA-GD--GGGAHINLKVKGQDGNEV 209
           GP+  +S+      +R+  E   E++GV    D KP  GD  G GAH N   K    +  
Sbjct: 203 GPSVGISAGDELWVSRYILERITEIAGVVLSFDPKPIQGDWNGAGAHTNYSTKSMRNDGG 262

Query: 210 FFRIKRSTQ 236
           F  IK++ +
Sbjct: 263 FEVIKKAIE 271

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>ESC2_ASHGO (Q756K3) Protein ESC2 (Establishes silent chromatin protein 2)|
          Length = 407

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 15/72 (20%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
 Frame = +3

Query: 171 INLKVKGQDGNEVFFRIKRSTQLKKLMNAY-CDRQSVDLNSIAFLFDGRRLRGEQTPDEL 347
           + + + G D  +VF  ++ +T L K+   Y   ++      ++ +FD   +  + T   +
Sbjct: 335 LKIVLLGSDNKKVFIHVRPTTTLLKVAEHYRVAKELPPTVQLSLMFDHEEIDLDDTICNI 394

Query: 348 EMEEGDEIDAML 383
           ++E+GD I+ ++
Sbjct: 395 DIEDGDIIEVVV 406

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>FARP1_PONPY (Q5RAB8) FERM, RhoGEF and pleckstrin domain-containing protein 1|
          Length = 1045

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = +3

Query: 102 SPEMSGV-TADEDKKPAGDGGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCD 266
           +PE SG+ T +  +KP     G  +++K++  D  +  F + +    K L++A C+
Sbjct: 16  APENSGISTLERGQKPPPTPSGKLVSIKIQMLDDTQEAFEVPQRAPGKVLLDAVCN 71

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>FARP1_HUMAN (Q9Y4F1) FERM, RhoGEF and pleckstrin domain-containing protein 1|
           (Chondrocyte-derived ezrin-like protein)
          Length = 1045

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = +3

Query: 102 SPEMSGV-TADEDKKPAGDGGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCD 266
           +PE SG+ T +  +KP     G  +++K++  D  +  F + +    K L++A C+
Sbjct: 16  APENSGISTLERGQKPPPTPSGKLVSIKIQMLDDTQEAFEVPQRAPGKVLLDAVCN 71

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>SNF7_NEUCR (Q871Y8) Vacuolar sorting protein snf-7 (Vacuolar protein|
           sorting-associated protein vps-32)
          Length = 228

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +3

Query: 309 GRRLRGEQTPDELEMEEGDEIDAMLHQTGG 398
           G+ +   +  DELE  + +E+D+ LH+TGG
Sbjct: 154 GQPIDEGELEDELEKLQQEEVDSKLHETGG 183

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>AROC_METAC (Q8TT87) Chorismate synthase (EC 4.2.3.5)|
           (5-enolpyruvylshikimate-3-phosphate phospholyase)
          Length = 365

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 27/86 (31%), Positives = 35/86 (40%), Gaps = 3/86 (3%)
 Frame = +3

Query: 150 GDGGGAHINLKVKGQD---GNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFDGRRL 320
           GD  G  + L VKG     G  VF R+        L  A     +V    I   F+  R+
Sbjct: 203 GDSVGGIVELIVKGVPAGLGEPVFDRLDAD-----LSKALMSIPAVKGFEIGAGFEAARM 257

Query: 321 RGEQTPDELEMEEGDEIDAMLHQTGG 398
           RG +  D   ME+G EI    +  GG
Sbjct: 258 RGSEMNDPFRMEQG-EITCSKNNAGG 282

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>MARCS_HUMAN (P29966) Myristoylated alanine-rich C-kinase substrate (MARCKS)|
           (Protein kinase C substrate, 80 kDa protein, light
           chain) (PKCSL) (80K-L protein)
          Length = 331

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 18/64 (28%), Positives = 28/64 (43%)
 Frame = +3

Query: 6   SSXXXXXXXXXGSPYGPNPDLSSSAARHSTEESPEMSGVTADEDKKPAGDGGGAHINLKV 185
           SS          +P   N        R S ++S ++SG +  ++KK AG+GG A      
Sbjct: 130 SSTSSPKAEDGATPSPSNETPKKKKKRFSFKKSFKLSGFSFKKNKKEAGEGGEAEAPAAE 189

Query: 186 KGQD 197
            G+D
Sbjct: 190 GGKD 193

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>ZFP59_MOUSE (P16373) Zinc finger protein 59 (Zfp-59) (Zinc finger protein|
           Mfg-2)
          Length = 634

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 212 LPHQEIHTAQEADECLL*PPVCGSQFHC 295
           + HQ IHT ++  EC L    CGS F C
Sbjct: 565 IEHQSIHTGEKPFECEL----CGSAFRC 588

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>L_NDVB (P11205) Large structural protein (Protein L) (Transcriptase)|
            (Replicase) [Includes: RNA-directed RNA polymerase (EC
            2.7.7.48); mRNA (guanine-N(7)-)-methyltransferase (EC
            2.1.1.56); mRNA guanylyltransferase (EC 2.7.7.-)]
          Length = 2204

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +3

Query: 300  LFDGRRLRGEQTPDELEMEEGDEIDAMLHQTGGCFRRA*KDVAAAW 437
            L  GR++ G   PD +E+ EG+    +L  +GGC R    D    W
Sbjct: 1128 LTGGRKILGVSNPDTIELVEGE----ILSVSGGCTRCDSGDEQFTW 1169

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>ATG2_YEAST (P53855) Autophagy-related protein 2 (Sporulation-specific protein|
           72)
          Length = 1592

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 318 LRGEQTPDELEMEEGDEIDAMLHQTG 395
           L GEQTP  + +  GDE+D ++   G
Sbjct: 430 LTGEQTPQSIALNMGDELDIIISHDG 455

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>CK5P1_DROME (Q9VGZ1) CDK5RAP1-like protein|
          Length = 583

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 17/72 (23%), Positives = 37/72 (51%)
 Frame = +3

Query: 180 KVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFDGRRLRGEQTPDELEMEE 359
           +++   G + FF +K +++LK     + D     LNSI F  +GR++  E    ++   +
Sbjct: 48  RIQRGPGFQDFFAVKPASRLKTDEEEHVDTSVPYLNSIDFNGNGRKVHFEVYGCQMNTND 107

Query: 360 GDEIDAMLHQTG 395
            + + ++L + G
Sbjct: 108 TEVVFSILKENG 119

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>SYFA_SYNY3 (Q55187) Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)|
           (Phenylalanine--tRNA ligase alpha chain) (PheRS)
          Length = 331

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 18/68 (26%), Positives = 30/68 (44%)
 Frame = +3

Query: 249 MNAYCDRQSVDLNSIAFLFDGRRLRGEQTPDELEMEEGDEIDAMLHQTGGCFRRA*KDVA 428
           +N   D  + D+    FL DGR LR   +P ++   E  +    +   G  +RR   D  
Sbjct: 148 LNIPADHPARDMQDTFFLKDGRLLRTHTSPVQIRYMEKHDPPIRIVAPGRVYRRDTVDAT 207

Query: 429 AAWLFYVV 452
            + +F+ V
Sbjct: 208 HSAVFHQV 215


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,002,004
Number of Sequences: 219361
Number of extensions: 1007683
Number of successful extensions: 5040
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 4473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5035
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3014947676
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result