| Clone Name | bast52c05 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DQ409175.1| Bambusa ventricosa cytochrome P450 mRNA, complete cds Length = 1913 Score = 113 bits (57), Expect = 5e-22 Identities = 156/189 (82%) Strand = Plus / Plus Query: 266 tcctgtactcgttctgcgtcagcgactacctgccgtcgctgctggggctggacctggacg 325 |||| ||| |||||||| || ||||||||| |||| |||||| || || ||||| |||| Sbjct: 857 tcctctacgcgttctgcatctccgactacctcccgtggctgctcggcctcgacctcgacg 916 Query: 326 gccacgaaaagattgtcaaggacgctaacgcggtgctggacagactgcatgacggggtca 385 ||||||| ||| | ||||||| || |||||| | || |||| ||||| ||| ||||| Sbjct: 917 gccacgagaaggtcatcaaggaggccaacgcgacggtgaacaggctgcacgacacggtca 976 Query: 386 tcgacgagcggtggaggcagtggaaggccggcgagaggggagaggtgcaggacttcctcg 445 |||||||||||||||||||||||||| |||||||||| ||| | |||||||||||| Sbjct: 977 tcgacgagcggtggaggcagtggaagagcggcgagaggcaggagctcgaggacttcctcg 1036 Query: 446 acgtgctca 454 ||||||||| Sbjct: 1037 acgtgctca 1045 Score = 73.8 bits (37), Expect = 4e-10 Identities = 58/65 (89%) Strand = Plus / Plus Query: 2 ccgacatcatctccccgtcccgtcacaagtggctccacgacaaacgcgtcgaggaggccg 61 |||| ||||||| ||| ||||| |||||||||||||||||||| |||| ||| ||||||| Sbjct: 596 ccgagatcatctgcccctcccgccacaagtggctccacgacaagcgcgacgacgaggccg 655 Query: 62 acaac 66 ||||| Sbjct: 656 acaac 660 Score = 71.9 bits (36), Expect = 2e-09 Identities = 51/56 (91%) Strand = Plus / Plus Query: 136 cggcactactgcggcaacgtcatacgccggctcctctttggcacgcgctacttcgg 191 ||||||||||||||||||||||| |||||||| |||| |||| |||||||||||| Sbjct: 727 cggcactactgcggcaacgtcatccgccggcttgtcttcggcaagcgctacttcgg 782
>gb|U32624.1|SBU32624 Sorghum bicolor N-hydroxylating, multifunctional cytochrome P-450 (CYP79) mRNA, complete cds Length = 2099 Score = 99.6 bits (50), Expect = 8e-18 Identities = 146/178 (82%) Strand = Plus / Plus Query: 277 ttctgcgtcagcgactacctgccgtcgctgctggggctggacctggacggccacgaaaag 336 ||||||||| ||||||||| || | ||||| ||| || ||||| ||||||||||| ||| Sbjct: 979 ttctgcgtctccgactacctcccctggctgcggggcctcgacctcgacggccacgagaag 1038 Query: 337 attgtcaaggacgctaacgcggtgctggacagactgcatgacggggtcatcgacgagcgg 396 || |||||||| ||||||| || | || |||| || || ||| |||||||||||| ||| Sbjct: 1039 atcgtcaaggaggctaacgtggcggtgaacaggctccacgacacggtcatcgacgaccgg 1098 Query: 397 tggaggcagtggaaggccggcgagaggggagaggtgcaggacttcctcgacgtgctca 454 ||||||||||||||| ||||||| || ||| || |||||||||| || ||||||| Sbjct: 1099 tggaggcagtggaagagcggcgagcggcaggagatggaggacttcctggatgtgctca 1156 Score = 50.1 bits (25), Expect = 0.006 Identities = 55/65 (84%) Strand = Plus / Plus Query: 2 ccgacatcatctccccgtcccgtcacaagtggctccacgacaaacgcgtcgaggaggccg 61 |||| ||||||| ||||||||| ||| |||||||||||||| ||| ||| ||||||| Sbjct: 698 ccgagatcatctgcccgtcccgccacgcctggctccacgacaagcgcaccgacgaggccg 757 Query: 62 acaac 66 ||||| Sbjct: 758 acaac 762
>ref|NM_184786.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1632 Score = 48.1 bits (24), Expect = 0.025 Identities = 30/32 (93%) Strand = Plus / Plus Query: 137 ggcactactgcggcaacgtcatacgccggctc 168 |||||| ||||||||||||||| ||||||||| Sbjct: 569 ggcacttctgcggcaacgtcatccgccggctc 600
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 48.1 bits (24), Expect = 0.025 Identities = 30/32 (93%) Strand = Plus / Minus Query: 137 ggcactactgcggcaacgtcatacgccggctc 168 |||||| ||||||||||||||| ||||||||| Sbjct: 20477662 ggcacttctgcggcaacgtcatccgccggctc 20477631 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 410 aggccggcgagaggggagagg 430 ||||||||||||||||||||| Sbjct: 12776151 aggccggcgagaggggagagg 12776171
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 48.1 bits (24), Expect = 0.025 Identities = 30/32 (93%) Strand = Plus / Minus Query: 137 ggcactactgcggcaacgtcatacgccggctc 168 |||||| ||||||||||||||| ||||||||| Sbjct: 20470691 ggcacttctgcggcaacgtcatccgccggctc 20470660 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 410 aggccggcgagaggggagagg 430 ||||||||||||||||||||| Sbjct: 12772914 aggccggcgagaggggagagg 12772934
>gb|AC084319.5|AC084319 Oryza sativa chromosome 3 BAC OSJNBa0004B24 genomic sequence, complete sequence Length = 152883 Score = 48.1 bits (24), Expect = 0.025 Identities = 30/32 (93%) Strand = Plus / Minus Query: 137 ggcactactgcggcaacgtcatacgccggctc 168 |||||| ||||||||||||||| ||||||||| Sbjct: 121962 ggcacttctgcggcaacgtcatccgccggctc 121931
>dbj|AK119569.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-117-A08, full insert sequence Length = 1844 Score = 48.1 bits (24), Expect = 0.025 Identities = 30/32 (93%) Strand = Plus / Plus Query: 137 ggcactactgcggcaacgtcatacgccggctc 168 |||||| ||||||||||||||| ||||||||| Sbjct: 625 ggcacttctgcggcaacgtcatccgccggctc 656
>ref|XM_852275.1| PREDICTED: Canis familiaris similar to MIR-interacting saposin-like protein precursor (Transmembrane protein 4) (Putative secreted protein ZSIG9), transcript variant 3 (LOC607115), mRNA Length = 977 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 199 ggccacggcggcggccccggga 220 |||||||||||||||||||||| Sbjct: 217 ggccacggcggcggccccggga 238
>ref|XM_843770.1| PREDICTED: Canis familiaris similar to MIR-interacting saposin-like protein precursor (Transmembrane protein 4) (Putative secreted protein ZSIG9), transcript variant 1 (LOC607115), mRNA Length = 939 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 199 ggccacggcggcggccccggga 220 |||||||||||||||||||||| Sbjct: 218 ggccacggcggcggccccggga 239
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 433 caggacttcctcgacgtgctc 453 ||||||||||||||||||||| Sbjct: 1600944 caggacttcctcgacgtgctc 1600964
>gb|AC148339.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone B1339A06, complete sequence Length = 132243 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 410 aggccggcgagaggggagagg 430 ||||||||||||||||||||| Sbjct: 14367 aggccggcgagaggggagagg 14387
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 231 ggagcacatggacgcctccttcgcc 255 ||||||||||||||||| ||||||| Sbjct: 1947649 ggagcacatggacgcctacttcgcc 1947673 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 198 cggccacggcggcggccccgg 218 ||||||||||||||||||||| Sbjct: 381095 cggccacggcggcggccccgg 381115
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 204 cggcggcggccccgggaagct 224 ||||||||||||||||||||| Sbjct: 3790651 cggcggcggccccgggaagct 3790671
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 282 cgtcagcgactacctgccgtcgctgctgg 310 ||||| ||||||||||||||||| ||||| Sbjct: 4619503 cgtcatcgactacctgccgtcgccgctgg 4619531 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 tgccgtcgctgctggggctg 315 |||||||||||||||||||| Sbjct: 2410664 tgccgtcgctgctggggctg 2410645
>ref|XM_475559.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1974 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 302 cgctgctggggctggacctg 321 |||||||||||||||||||| Sbjct: 471 cgctgctggggctggacctg 490
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 283 gtcagcgactacctgccgtcgctgctgg 310 |||| ||||||||||||||||| ||||| Sbjct: 2091891 gtcatcgactacctgccgtcgccgctgg 2091864
>ref|XM_366222.1| Magnaporthe grisea 70-15 hypothetical protein (MG10441.4) partial mRNA Length = 1014 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 303 gctgctggggctggacctgg 322 |||||||||||||||||||| Sbjct: 498 gctgctggggctggacctgg 517
>gb|AC134931.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0079L11, complete sequence Length = 124104 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 302 cgctgctggggctggacctg 321 |||||||||||||||||||| Sbjct: 108426 cgctgctggggctggacctg 108407
>emb|X12602.1|BTGAPR Bovine mRNA for GTPase activating protein (GAP) Length = 4473 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 92 ccggcggtgaggagggcggc 111 |||||||||||||||||||| Sbjct: 614 ccggcggtgaggagggcggc 633
>emb|AL939107.1|SCO939107 Streptomyces coelicolor A3(2) complete genome; segment 4/29 Length = 298450 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 188 tcggggaagccggccacggcggcg 211 ||||||||| |||||||||||||| Sbjct: 62350 tcggggaaggcggccacggcggcg 62373
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 401 ggcagtggaaggccggcgag 420 |||||||||||||||||||| Sbjct: 4179252 ggcagtggaaggccggcgag 4179233
>gb|AE011701.1| Xanthomonas axonopodis pv. citri str. 306, section 79 of 469 of the complete genome Length = 10638 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 401 ggcagtggaaggccggcgag 420 |||||||||||||||||||| Sbjct: 267 ggcagtggaaggccggcgag 286
>gb|AF499231.1| Mycobacterium smegmatis strain mc2-155 elongation factor G (fusA) gene, complete cds Length = 2106 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 283 gtcagcgactacctgccgtcgctgctgg 310 |||| ||||||||||||||||| ||||| Sbjct: 835 gtcatcgactacctgccgtcgccgctgg 862
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 302 cgctgctggggctggacctg 321 |||||||||||||||||||| Sbjct: 1446764 cgctgctggggctggacctg 1446745
>emb|BX932552.1| Gallus gallus finished cDNA, clone ChEST622f12 Length = 1026 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 cggcggtgaggagggcggca 112 |||||||||||||||||||| Sbjct: 54 cggcggtgaggagggcggca 73
>gb|AE004715.1| Pseudomonas aeruginosa PAO1, section 276 of 529 of the complete genome Length = 10189 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 192 ggaagccggccacggcggcg 211 |||||||||||||||||||| Sbjct: 1034 ggaagccggccacggcggcg 1015
>ref|NM_174449.2| Bos taurus RAS p21 protein activator (GTPase activating protein RAS p21) (RASA1), mRNA Length = 4473 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 92 ccggcggtgaggagggcggc 111 |||||||||||||||||||| Sbjct: 614 ccggcggtgaggagggcggc 633
>dbj|AK070653.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023055D14, full insert sequence Length = 3691 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 302 cgctgctggggctggacctg 321 |||||||||||||||||||| Sbjct: 937 cgctgctggggctggacctg 956
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 401 ggcagtggaaggccggcgag 420 |||||||||||||||||||| Sbjct: 4182673 ggcagtggaaggccggcgag 4182654
>gb|AC129720.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0683F12, complete sequence Length = 144455 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 302 cgctgctggggctggacctg 321 |||||||||||||||||||| Sbjct: 40844 cgctgctggggctggacctg 40825
>gb|U12314.1|CCU12314 Cenchrus ciliaris clone PX7 peroxidase mRNA, complete cds Length = 1335 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 236 acatggacgcctccttcgccgcgc 259 |||| ||||||||||||||||||| Sbjct: 665 acatcgacgcctccttcgccgcgc 688 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,820,318 Number of Sequences: 3902068 Number of extensions: 2820318 Number of successful extensions: 106160 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 33 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 105178 Number of HSP's gapped (non-prelim): 981 length of query: 454 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 432 effective length of database: 17,147,199,772 effective search space: 7407590301504 effective search space used: 7407590301504 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)