ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast52c05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|DQ409175.1| Bambusa ventricosa cytochrome P450 mRNA, complete... 113 5e-22
2gb|U32624.1|SBU32624 Sorghum bicolor N-hydroxylating, multifunct... 100 8e-18
3ref|NM_184786.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.025
4gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 48 0.025
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.025
6gb|AC084319.5|AC084319 Oryza sativa chromosome 3 BAC OSJNBa0004B... 48 0.025
7dbj|AK119569.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.025
8ref|XM_852275.1| PREDICTED: Canis familiaris similar to MIR-inte... 44 0.39
9ref|XM_843770.1| PREDICTED: Canis familiaris similar to MIR-inte... 44 0.39
10gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome 42 1.5
11gb|AC148339.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.5
12gb|CP000249.1| Frankia sp. CcI3, complete genome 42 1.5
13dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 42 1.5
14gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 42 1.5
15ref|XM_475559.1| Oryza sativa (japonica cultivar-group), predic... 40 6.1
16gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete ... 40 6.1
17ref|XM_366222.1| Magnaporthe grisea 70-15 hypothetical protein (... 40 6.1
18gb|AC134931.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.1
19emb|X12602.1|BTGAPR Bovine mRNA for GTPase activating protein (GAP) 40 6.1
20emb|AL939107.1|SCO939107 Streptomyces coelicolor A3(2) complete ... 40 6.1
21dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, c... 40 6.1
22gb|AE011701.1| Xanthomonas axonopodis pv. citri str. 306, secti... 40 6.1
23gb|AF499231.1| Mycobacterium smegmatis strain mc2-155 elongation... 40 6.1
24dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
25emb|BX932552.1| Gallus gallus finished cDNA, clone ChEST622f12 40 6.1
26gb|AE004715.1| Pseudomonas aeruginosa PAO1, section 276 of 529 o... 40 6.1
27ref|NM_174449.2| Bos taurus RAS p21 protein activator (GTPase ac... 40 6.1
28dbj|AK070653.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.1
29gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete... 40 6.1
30gb|AC129720.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.1
31gb|U12314.1|CCU12314 Cenchrus ciliaris clone PX7 peroxidase mRNA... 40 6.1

>gb|DQ409175.1| Bambusa ventricosa cytochrome P450 mRNA, complete cds
          Length = 1913

 Score =  113 bits (57), Expect = 5e-22
 Identities = 156/189 (82%)
 Strand = Plus / Plus

                                                                        
Query: 266  tcctgtactcgttctgcgtcagcgactacctgccgtcgctgctggggctggacctggacg 325
            |||| ||| |||||||| ||  ||||||||| |||| |||||| || || ||||| ||||
Sbjct: 857  tcctctacgcgttctgcatctccgactacctcccgtggctgctcggcctcgacctcgacg 916

                                                                        
Query: 326  gccacgaaaagattgtcaaggacgctaacgcggtgctggacagactgcatgacggggtca 385
            ||||||| ||| |  ||||||| || ||||||  | || |||| ||||| |||  |||||
Sbjct: 917  gccacgagaaggtcatcaaggaggccaacgcgacggtgaacaggctgcacgacacggtca 976

                                                                        
Query: 386  tcgacgagcggtggaggcagtggaaggccggcgagaggggagaggtgcaggacttcctcg 445
            ||||||||||||||||||||||||||  ||||||||||   ||| |  ||||||||||||
Sbjct: 977  tcgacgagcggtggaggcagtggaagagcggcgagaggcaggagctcgaggacttcctcg 1036

                     
Query: 446  acgtgctca 454
            |||||||||
Sbjct: 1037 acgtgctca 1045



 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 58/65 (89%)
 Strand = Plus / Plus

                                                                       
Query: 2   ccgacatcatctccccgtcccgtcacaagtggctccacgacaaacgcgtcgaggaggccg 61
           |||| ||||||| ||| ||||| |||||||||||||||||||| |||| ||| |||||||
Sbjct: 596 ccgagatcatctgcccctcccgccacaagtggctccacgacaagcgcgacgacgaggccg 655

                
Query: 62  acaac 66
           |||||
Sbjct: 656 acaac 660



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 51/56 (91%)
 Strand = Plus / Plus

                                                                   
Query: 136 cggcactactgcggcaacgtcatacgccggctcctctttggcacgcgctacttcgg 191
           ||||||||||||||||||||||| ||||||||  |||| |||| ||||||||||||
Sbjct: 727 cggcactactgcggcaacgtcatccgccggcttgtcttcggcaagcgctacttcgg 782



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>gb|U32624.1|SBU32624 Sorghum bicolor N-hydroxylating, multifunctional cytochrome P-450
            (CYP79) mRNA, complete cds
          Length = 2099

 Score = 99.6 bits (50), Expect = 8e-18
 Identities = 146/178 (82%)
 Strand = Plus / Plus

                                                                        
Query: 277  ttctgcgtcagcgactacctgccgtcgctgctggggctggacctggacggccacgaaaag 336
            |||||||||  ||||||||| || | ||||| ||| || ||||| ||||||||||| |||
Sbjct: 979  ttctgcgtctccgactacctcccctggctgcggggcctcgacctcgacggccacgagaag 1038

                                                                        
Query: 337  attgtcaaggacgctaacgcggtgctggacagactgcatgacggggtcatcgacgagcgg 396
            || |||||||| ||||||| || | || |||| || || |||  |||||||||||| |||
Sbjct: 1039 atcgtcaaggaggctaacgtggcggtgaacaggctccacgacacggtcatcgacgaccgg 1098

                                                                      
Query: 397  tggaggcagtggaaggccggcgagaggggagaggtgcaggacttcctcgacgtgctca 454
            |||||||||||||||  ||||||| ||   ||| || |||||||||| || |||||||
Sbjct: 1099 tggaggcagtggaagagcggcgagcggcaggagatggaggacttcctggatgtgctca 1156



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 55/65 (84%)
 Strand = Plus / Plus

                                                                       
Query: 2   ccgacatcatctccccgtcccgtcacaagtggctccacgacaaacgcgtcgaggaggccg 61
           |||| ||||||| ||||||||| |||   |||||||||||||| |||  ||| |||||||
Sbjct: 698 ccgagatcatctgcccgtcccgccacgcctggctccacgacaagcgcaccgacgaggccg 757

                
Query: 62  acaac 66
           |||||
Sbjct: 758 acaac 762



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>ref|NM_184786.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1632

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 137 ggcactactgcggcaacgtcatacgccggctc 168
           |||||| ||||||||||||||| |||||||||
Sbjct: 569 ggcacttctgcggcaacgtcatccgccggctc 600



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                                
Query: 137      ggcactactgcggcaacgtcatacgccggctc 168
                |||||| ||||||||||||||| |||||||||
Sbjct: 20477662 ggcacttctgcggcaacgtcatccgccggctc 20477631



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 410      aggccggcgagaggggagagg 430
                |||||||||||||||||||||
Sbjct: 12776151 aggccggcgagaggggagagg 12776171



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                                
Query: 137      ggcactactgcggcaacgtcatacgccggctc 168
                |||||| ||||||||||||||| |||||||||
Sbjct: 20470691 ggcacttctgcggcaacgtcatccgccggctc 20470660



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 410      aggccggcgagaggggagagg 430
                |||||||||||||||||||||
Sbjct: 12772914 aggccggcgagaggggagagg 12772934



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>gb|AC084319.5|AC084319 Oryza sativa chromosome 3 BAC OSJNBa0004B24 genomic sequence, complete
              sequence
          Length = 152883

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                              
Query: 137    ggcactactgcggcaacgtcatacgccggctc 168
              |||||| ||||||||||||||| |||||||||
Sbjct: 121962 ggcacttctgcggcaacgtcatccgccggctc 121931



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>dbj|AK119569.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-117-A08, full
           insert sequence
          Length = 1844

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 137 ggcactactgcggcaacgtcatacgccggctc 168
           |||||| ||||||||||||||| |||||||||
Sbjct: 625 ggcacttctgcggcaacgtcatccgccggctc 656



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>ref|XM_852275.1| PREDICTED: Canis familiaris similar to MIR-interacting saposin-like
           protein precursor (Transmembrane protein 4) (Putative
           secreted protein ZSIG9), transcript variant 3
           (LOC607115), mRNA
          Length = 977

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 199 ggccacggcggcggccccggga 220
           ||||||||||||||||||||||
Sbjct: 217 ggccacggcggcggccccggga 238



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>ref|XM_843770.1| PREDICTED: Canis familiaris similar to MIR-interacting saposin-like
           protein precursor (Transmembrane protein 4) (Putative
           secreted protein ZSIG9), transcript variant 1
           (LOC607115), mRNA
          Length = 939

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 199 ggccacggcggcggccccggga 220
           ||||||||||||||||||||||
Sbjct: 218 ggccacggcggcggccccggga 239



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>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 433     caggacttcctcgacgtgctc 453
               |||||||||||||||||||||
Sbjct: 1600944 caggacttcctcgacgtgctc 1600964



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>gb|AC148339.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone B1339A06,
             complete sequence
          Length = 132243

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 410   aggccggcgagaggggagagg 430
             |||||||||||||||||||||
Sbjct: 14367 aggccggcgagaggggagagg 14387



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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 231     ggagcacatggacgcctccttcgcc 255
               ||||||||||||||||| |||||||
Sbjct: 1947649 ggagcacatggacgcctacttcgcc 1947673



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 198    cggccacggcggcggccccgg 218
              |||||||||||||||||||||
Sbjct: 381095 cggccacggcggcggccccgg 381115



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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 204     cggcggcggccccgggaagct 224
               |||||||||||||||||||||
Sbjct: 3790651 cggcggcggccccgggaagct 3790671



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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                            
Query: 282     cgtcagcgactacctgccgtcgctgctgg 310
               ||||| ||||||||||||||||| |||||
Sbjct: 4619503 cgtcatcgactacctgccgtcgccgctgg 4619531



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 296     tgccgtcgctgctggggctg 315
               ||||||||||||||||||||
Sbjct: 2410664 tgccgtcgctgctggggctg 2410645



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>ref|XM_475559.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1974

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 302 cgctgctggggctggacctg 321
           ||||||||||||||||||||
Sbjct: 471 cgctgctggggctggacctg 490



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>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome
          Length = 2584158

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 283     gtcagcgactacctgccgtcgctgctgg 310
               |||| ||||||||||||||||| |||||
Sbjct: 2091891 gtcatcgactacctgccgtcgccgctgg 2091864



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>ref|XM_366222.1| Magnaporthe grisea 70-15 hypothetical protein (MG10441.4) partial
           mRNA
          Length = 1014

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 303 gctgctggggctggacctgg 322
           ||||||||||||||||||||
Sbjct: 498 gctgctggggctggacctgg 517



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>gb|AC134931.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0079L11,
              complete sequence
          Length = 124104

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 302    cgctgctggggctggacctg 321
              ||||||||||||||||||||
Sbjct: 108426 cgctgctggggctggacctg 108407



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>emb|X12602.1|BTGAPR Bovine mRNA for GTPase activating protein (GAP)
          Length = 4473

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 92  ccggcggtgaggagggcggc 111
           ||||||||||||||||||||
Sbjct: 614 ccggcggtgaggagggcggc 633



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>emb|AL939107.1|SCO939107 Streptomyces coelicolor A3(2) complete genome; segment 4/29
          Length = 298450

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 188   tcggggaagccggccacggcggcg 211
             ||||||||| ||||||||||||||
Sbjct: 62350 tcggggaaggcggccacggcggcg 62373



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>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome
          Length = 4940217

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 401     ggcagtggaaggccggcgag 420
               ||||||||||||||||||||
Sbjct: 4179252 ggcagtggaaggccggcgag 4179233



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>gb|AE011701.1| Xanthomonas axonopodis pv. citri str. 306,  section 79 of 469 of
           the complete genome
          Length = 10638

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 401 ggcagtggaaggccggcgag 420
           ||||||||||||||||||||
Sbjct: 267 ggcagtggaaggccggcgag 286



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>gb|AF499231.1| Mycobacterium smegmatis strain mc2-155 elongation factor G (fusA)
           gene, complete cds
          Length = 2106

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 283 gtcagcgactacctgccgtcgctgctgg 310
           |||| ||||||||||||||||| |||||
Sbjct: 835 gtcatcgactacctgccgtcgccgctgg 862



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 302     cgctgctggggctggacctg 321
               ||||||||||||||||||||
Sbjct: 1446764 cgctgctggggctggacctg 1446745



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>emb|BX932552.1| Gallus gallus finished cDNA, clone ChEST622f12
          Length = 1026

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 93  cggcggtgaggagggcggca 112
           ||||||||||||||||||||
Sbjct: 54  cggcggtgaggagggcggca 73



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>gb|AE004715.1| Pseudomonas aeruginosa PAO1, section 276 of 529 of the complete
            genome
          Length = 10189

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 192  ggaagccggccacggcggcg 211
            ||||||||||||||||||||
Sbjct: 1034 ggaagccggccacggcggcg 1015



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>ref|NM_174449.2| Bos taurus RAS p21 protein activator (GTPase activating protein RAS
           p21) (RASA1), mRNA
          Length = 4473

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 92  ccggcggtgaggagggcggc 111
           ||||||||||||||||||||
Sbjct: 614 ccggcggtgaggagggcggc 633



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>dbj|AK070653.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023055D14, full
           insert sequence
          Length = 3691

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 302 cgctgctggggctggacctg 321
           ||||||||||||||||||||
Sbjct: 937 cgctgctggggctggacctg 956



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>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome
          Length = 4941439

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 401     ggcagtggaaggccggcgag 420
               ||||||||||||||||||||
Sbjct: 4182673 ggcagtggaaggccggcgag 4182654



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>gb|AC129720.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0683F12,
             complete sequence
          Length = 144455

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 302   cgctgctggggctggacctg 321
             ||||||||||||||||||||
Sbjct: 40844 cgctgctggggctggacctg 40825



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>gb|U12314.1|CCU12314 Cenchrus ciliaris clone PX7 peroxidase mRNA, complete cds
          Length = 1335

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 236 acatggacgcctccttcgccgcgc 259
           |||| |||||||||||||||||||
Sbjct: 665 acatcgacgcctccttcgccgcgc 688


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,820,318
Number of Sequences: 3902068
Number of extensions: 2820318
Number of successful extensions: 106160
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 105178
Number of HSP's gapped (non-prelim): 981
length of query: 454
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 432
effective length of database: 17,147,199,772
effective search space: 7407590301504
effective search space used: 7407590301504
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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