Clone Information

BLAST Search Result

Clone Name	bast52c02
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	POLG_HCVVP (O92532) Genome polyprotein [Contains: Core protein p...	32	0.51
2	GCP6_HUMAN (Q96RT7) Gamma-tubulin complex component 6 (GCP-6)	32	0.67
3	POLG_HCV6A (Q5I2N3) Genome polyprotein [Contains: Core protein p...	32	0.87
4	POLG_HCVVO (O92531) Genome polyprotein [Contains: Core protein p...	31	1.1
5	FOXN1_MOUSE (Q61575) Forkhead box protein N1 (Transcription fact...	31	1.1
6	HYDL_STRCO (P42534) Putative polyketide hydroxylase (EC 1.14.13....	31	1.1
7	COIA1_HUMAN (P39060) Collagen alpha-1(XVIII) chain precursor [Co...	31	1.1
8	POLG_HCVVN (O92530) Genome polyprotein [Contains: Core protein p...	31	1.5
9	TILS_XYLFT (Q87BE2) tRNA(Ile)-lysidine synthase (EC 6.3.4.-) (tR...	30	2.5
10	LYL1_MOUSE (P27792) Lyl-1 protein (Lymphoblastic leukemia-derive...	30	2.5
11	POLG_HCVT5 (O92529) Genome polyprotein [Contains: Core protein p...	30	2.5
12	SEM4C_MOUSE (Q64151) Semaphorin-4C precursor (Semaphorin I) (Sem...	30	3.3
13	POLG_HCVJF (Q99IB8) Genome polyprotein [Contains: Core protein p...	30	3.3
14	EP300_HUMAN (Q09472) E1A-associated protein p300 (EC 2.3.1.48)	30	3.3
15	POLG_HCVTW (P29846) Genome polyprotein [Contains: Core protein p...	30	3.3
16	POLG_HCV1 (P26664) Genome polyprotein [Contains: Core protein p2...	30	3.3
17	MYO15_MOUSE (Q9QZZ4) Myosin-15 (Myosin XV) (Unconventional myosi...	30	3.3
18	PALI_MAGGR (Q51MB1) pH-response regulator protein palI/RIM9	30	3.3
19	CT2NL_PONPY (Q5RDH2) CTTNBP2 N-terminal-like protein	30	3.3
20	CT2NL_MOUSE (Q99LJ0) CTTNBP2 N-terminal-like protein	30	3.3
21	CD2L5_HUMAN (Q14004) Cell division cycle 2-like protein kinase 5...	24	4.0
22	POLG_HCVJT (Q00269) Genome polyprotein [Contains: Core protein p...	29	4.3
23	POLG_HCVJA (P26662) Genome polyprotein [Contains: Core protein p...	29	4.3
24	POLG_HCVCO (Q9WMX2) Genome polyprotein [Contains: Core protein p...	29	4.3
25	POLG_HCVBK (P26663) Genome polyprotein [Contains: Core protein p...	29	4.3
26	POLG_HCVEU (O39927) Genome polyprotein [Contains: Core protein p...	29	4.3
27	SPT5H_CHICK (Q5ZI08) Transcription elongation factor SPT5 (DRB s...	29	4.3
28	POLG_HCVJL (Q68798) Genome polyprotein [Contains: Core protein p...	29	4.3
29	POLG_HCVJK (Q68801) Genome polyprotein [Contains: Core protein p...	29	4.3
30	EMID1_HUMAN (Q96A84) EMI domain-containing protein 1 precursor (...	25	4.5
31	CEZ2_HUMAN (Q8TE49) Zinc finger A20 domain-containing protein ? ...	29	5.7
32	POLG_HCVTR (Q81487) Genome polyprotein [Contains: Core protein p...	29	5.7
33	TILS_XYLFA (Q9PFJ8) tRNA(Ile)-lysidine synthase (EC 6.3.4.-) (tR...	29	5.7
34	CO1A2_ONCMY (O93484) Collagen alpha-2(I) chain precursor	29	5.7
35	COL14_CAEEL (P18834) Cuticle collagen 14	29	5.7
36	CO3A1_CHICK (P12105) Collagen alpha-1(III) chain precursor (Frag...	29	5.7
37	CD2L5_MOUSE (Q69ZA1) Cell division cycle 2-like protein kinase 5...	25	6.6
38	E75_MANSE (Q08893) Ecdysone-inducible protein E75	28	7.4
39	ADCY7_HUMAN (P51828) Adenylate cyclase type 7 (EC 4.6.1.1) (Aden...	28	7.4
40	PBP1_YEAST (P53297) PAB1-binding protein 1	28	7.4
41	ZIMP7_HUMAN (Q8NF64) PIAS-like protein Zimp7	28	7.4
42	SHC2_MOUSE (Q8BMC3) SHC transforming protein 2 (SH2 domain prote...	28	7.4
43	ZDHC1_MOUSE (Q8R0N9) Probable palmitoyltransferase ZDHHC1 (EC 2....	28	7.4
44	UN119_RAT (Q62885) Unc-119 protein homolog (Retinal protein 4) (...	28	9.7
45	CSP_DROME (Q03751) Cysteine string protein	28	9.7
46	CCD95_HUMAN (Q8NBZ0) Coiled-coil domain-containing protein 95	28	9.7
47	PO2F1_XENLA (P16143) POU domain, class 2, transcription factor 1...	28	9.7
48	ZIMP7_MOUSE (Q8CIE2) PIAS-like protein Zimp7	28	9.7
49	SEM4C_HUMAN (Q9C0C4) Semaphorin-4C precursor	28	9.7
50	RSRC1_HUMAN (Q96IZ7) Arginine/serine-rich coiled coil protein 1	28	9.7
51	ZIC3_HUMAN (O60481) Zinc finger protein ZIC 3 (Zinc finger prote...	28	9.7
52	PPRB_HUMAN (Q15648) Peroxisome proliferator-activated receptor-b...	28	9.7
53	ROK1_CANAL (Q9Y7C4) ATP-dependent RNA helicase CHR1 (EC 3.6.1.-)	28	9.7
54	CO4A1_DROME (P08120) Collagen alpha-1(IV) chain precursor	28	9.7
55	Y674_TREPA (O83680) Hypothetical protein TP0674	28	9.7

>POLG_HCVVP (O92532) Genome polyprotein [Contains: Core protein p21 (Capsid|
            protein C) (p21); Core protein p19; Envelope glycoprotein
            E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68)
            (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine
            protease/N
          Length = 3014

 Score = 32.3 bits (72), Expect = 0.51
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 10/61 (16%)
 Frame = +2

Query: 17   VVSIPACHAGDPGSFPG----------NGAKFAALGTSSPPGSCILPSPPLLACRFLGTG 166
            V+    CH+ DP +  G          +G +   L T++PPGS  +P P +       TG
Sbjct: 1312 VIICDECHSTDPTTVSGIGTVLDQAETSGVRLTVLATATPPGSVTVPHPNITESALPTTG 1371

Query: 167  K 169
            +
Sbjct: 1372 E 1372

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>GCP6_HUMAN (Q96RT7) Gamma-tubulin complex component 6 (GCP-6)|
          Length = 1819

 Score = 32.0 bits (71), Expect = 0.67
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +2

Query: 182  MASNYVDTTGEEGRFHTHGHHSNSTTPTGEAASP-KNTRRRW 304
            +  N  D    + R++THGH SN++   GE+ S    TR RW
Sbjct: 1063 VGENVSDVAPTQPRWNTHGHVSNASISLGESVSDVAPTRPRW 1104

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>POLG_HCV6A (Q5I2N3) Genome polyprotein [Contains: Core protein p21 (Capsid|
            protein C) (p21); Core protein p19; Envelope glycoprotein
            E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68)
            (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine
            protease/N
          Length = 3018

 Score = 31.6 bits (70), Expect = 0.87
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 10/61 (16%)
 Frame = +2

Query: 17   VVSIPACHAGDPGSFPG----------NGAKFAALGTSSPPGSCILPSPPLLACRFLGTG 166
            ++    CH+ DP +  G           GA+   L T++PPGS  +P P +       TG
Sbjct: 1316 IIICDECHSTDPTTVLGIGTVLDQAETAGARLTVLATATPPGSITVPHPNITETALPTTG 1375

Query: 167  K 169
            +
Sbjct: 1376 E 1376

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>POLG_HCVVO (O92531) Genome polyprotein [Contains: Core protein p21 (Capsid|
            protein C) (p21); Core protein p19; Envelope glycoprotein
            E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68)
            (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine
            protease/N
          Length = 3015

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 10/61 (16%)
 Frame = +2

Query: 17   VVSIPACHAGDPGSFPG----------NGAKFAALGTSSPPGSCILPSPPLLACRFLGTG 166
            ++    CH+ DP +  G           G +   L T++PPGS  +P P +       TG
Sbjct: 1313 IIICDECHSTDPTTVLGIGTVLDQAETAGVRLTVLATATPPGSVTVPHPNITEVALSSTG 1372

Query: 167  K 169
            +
Sbjct: 1373 E 1373

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>FOXN1_MOUSE (Q61575) Forkhead box protein N1 (Transcription factor winged-helix|
           nude) (Hepatocyte nuclear factor 3 forkhead homolog 11)
           (HNF-3/forkhead homolog 11) (HFH-11)
          Length = 648

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 9/74 (12%)
 Frame = +2

Query: 89  LGTSSPPGSCILPSPPLLACRFLG-----TGKQGTEMASNYVDTTGEEGRFHTHGHHSN- 250
           L TSSP  S +LP PP   C   G     TG +  E+A      +G  G  H    +S  
Sbjct: 561 LVTSSPTSSSMLPPPPAAHCFPPGPCLAETGNEAGELAPPGSGGSGALGDMHLSTLYSAF 620

Query: 251 ---STTPTGEAASP 283
               +TP+  AA P
Sbjct: 621 VELESTPSSAAAGP 634

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>HYDL_STRCO (P42534) Putative polyketide hydroxylase (EC 1.14.13.-) (WhiE ORF|
           VIII)
          Length = 627

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 20/44 (45%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = -2

Query: 135 GGEGRMQLPGGDEVPRAANLAP--LPGNEPGSPA*QAGILTTIL 10
           GG G    PGG + PR A  AP   PG  PG    Q GIL   L
Sbjct: 434 GGPGGPGGPGGPDGPRGAGGAPGGGPGGGPGGGGPQRGILNVAL 477

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>COIA1_HUMAN (P39060) Collagen alpha-1(XVIII) chain precursor [Contains:|
           Endostatin]
          Length = 1516

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 23/69 (33%), Positives = 26/69 (37%), Gaps = 2/69 (2%)
 Frame = +2

Query: 92  GTSSPPGSCILPSPPLLACRF--LGTGKQGTEMASNYVDTTGEEGRFHTHGHHSNSTTPT 265
           G + PPGS  LP PP L C    LG      +         G  GR  T G       P 
Sbjct: 532 GRAGPPGSPCLPGPPGLPCPVSPLGPAGPALQTVPGPQGPPGPPGRDGTPGRDGEPGDP- 590

Query: 266 GEAASPKNT 292
           GE   P +T
Sbjct: 591 GEDGKPGDT 599

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>POLG_HCVVN (O92530) Genome polyprotein [Contains: Core protein p21 (Capsid|
            protein C) (p21); Core protein p19; Envelope glycoprotein
            E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68)
            (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine
            protease/N
          Length = 3012

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 10/61 (16%)
 Frame = +2

Query: 17   VVSIPACHAGDPGSFPG----------NGAKFAALGTSSPPGSCILPSPPLLACRFLGTG 166
            ++    CH+ DP +  G           G +   L T++PPGS  +P P +       TG
Sbjct: 1309 IIICDECHSTDPTTVLGIGTVLDQAETAGVRLTVLATATPPGSVTVPHPNITETALPSTG 1368

Query: 167  K 169
            +
Sbjct: 1369 E 1369

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>TILS_XYLFT (Q87BE2) tRNA(Ile)-lysidine synthase (EC 6.3.4.-)|
           (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase)
          Length = 437

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 15/25 (60%), Positives = 19/25 (76%)
 Frame = -2

Query: 180 SVPCFPVPRNLQARRGGEGRMQLPG 106
           +VP FP P  ++ARRGGE R+ LPG
Sbjct: 348 TVPGFPHPLRVRARRGGE-RLILPG 371

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>LYL1_MOUSE (P27792) Lyl-1 protein (Lymphoblastic leukemia-derived sequence 1)|
          Length = 278

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 18/46 (39%), Positives = 21/46 (45%)
 Frame = -2

Query: 180 SVPCFPVPRNLQARRGGEGRMQLPGGDEVPRAANLAPLPGNEPGSP 43
           S P  P  R   ARRG EG  +   G  V  A +   LPG+  G P
Sbjct: 214 SGPSAPGSRKPPARRGVEGSARFGAGHRVEAARSQPVLPGDCDGDP 259

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>POLG_HCVT5 (O92529) Genome polyprotein [Contains: Core protein p21 (Capsid|
            protein C) (p21); Core protein p19; Envelope glycoprotein
            E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68)
            (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine
            protease/N
          Length = 3018

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 10/61 (16%)
 Frame = +2

Query: 17   VVSIPACHAGDPGSFPG----------NGAKFAALGTSSPPGSCILPSPPLLACRFLGTG 166
            ++    CH+ DP +  G           G +   L T++PPGS  +P P +       TG
Sbjct: 1316 IIICDECHSTDPTTVLGIGTVLDQAETAGVRLTVLATATPPGSVTVPHPNITETALPTTG 1375

Query: 167  K 169
            +
Sbjct: 1376 E 1376

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>SEM4C_MOUSE (Q64151) Semaphorin-4C precursor (Semaphorin I) (Sema I)|
           (Semaphorin C-like 1) (M-Sema F)
          Length = 834

 Score = 29.6 bits (65), Expect = 3.3
 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
 Frame = +1

Query: 124 PLPSPPRLQISRHRETGDRNGF---QLRGHHRGGGKVPHP 234
           PLPSP RL +   R + + NG+   QL G  RGG   P P
Sbjct: 770 PLPSPTRLHLGGGRNS-NANGYVRLQLGGEDRGGSGHPLP 808

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>POLG_HCVJF (Q99IB8) Genome polyprotein [Contains: Core protein p21 (Capsid|
            protein C) (p21); Core protein p19; Envelope glycoprotein
            E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68)
            (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine
            protease/N
          Length = 3032

 Score = 29.6 bits (65), Expect = 3.3
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 10/63 (15%)
 Frame = +2

Query: 17   VVSIPACHAGDPGSFPG----------NGAKFAALGTSSPPGSCILPSPPLLACRFLGTG 166
            ++    CHA D  S  G           G +   L T++PPGS   P P +     +G G
Sbjct: 1315 IIICDECHAVDATSILGIGTVLDQAETAGVRLTVLATATPPGSVTTPHPDI---EEVGLG 1371

Query: 167  KQG 175
            ++G
Sbjct: 1372 REG 1374

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>EP300_HUMAN (Q09472) E1A-associated protein p300 (EC 2.3.1.48)|
          Length = 2414

 Score = 29.6 bits (65), Expect = 3.3
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +1

Query: 22  KYSRLSRG*PGFVPRQRRQVCRSRHLVSSGQLHPPLPSPPRLQ 150
           ++ ++S   P  VPRQ   +     L   G L+PP+   PR+Q
Sbjct: 714 QFGQMSMAQPPIVPRQTPPLQHHGQLAQPGALNPPMGYGPRMQ 756

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>POLG_HCVTW (P29846) Genome polyprotein [Contains: Core protein p21 (Capsid|
            protein C) (p21); Core protein p19; Envelope glycoprotein
            E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68)
            (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine
            protease/N
          Length = 3009

 Score = 29.6 bits (65), Expect = 3.3
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 10/61 (16%)
 Frame = +2

Query: 17   VVSIPACHAGDPGSFPG----------NGAKFAALGTSSPPGSCILPSPPLLACRFLGTG 166
            ++    CH+ D  +  G           GA+   L T++PPGS  +P P +       TG
Sbjct: 1311 IIMCDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPGSVTVPHPNIEEIALSNTG 1370

Query: 167  K 169
            +
Sbjct: 1371 E 1371

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>POLG_HCV1 (P26664) Genome polyprotein [Contains: Core protein p21 (Capsid|
            protein C) (p21); Core protein p19; Envelope glycoprotein
            E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68)
            (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine
            protease/NT
          Length = 3010

 Score = 29.6 bits (65), Expect = 3.3
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 10/61 (16%)
 Frame = +2

Query: 17   VVSIPACHAGDPGSFPG----------NGAKFAALGTSSPPGSCILPSPPLLACRFLGTG 166
            ++    CH+ D  S  G           GA+   L T++PPGS  +P P +       TG
Sbjct: 1311 IIICDECHSTDATSILGIGTVLDQAETAGARLVVLATATPPGSVTVPHPNIEEVALSTTG 1370

Query: 167  K 169
            +
Sbjct: 1371 E 1371

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>MYO15_MOUSE (Q9QZZ4) Myosin-15 (Myosin XV) (Unconventional myosin-15)|
          Length = 3511

 Score = 29.6 bits (65), Expect = 3.3
 Identities = 18/45 (40%), Positives = 20/45 (44%)
 Frame = +1

Query: 109 GQLHPPLPSPPRLQISRHRETGDRNGFQLRGHHRGGGKVPHPRSP 243
           G   PP P PPR      R    R  F LR   R  G++  PRSP
Sbjct: 795 GPFQPPFPPPPR------RPQSLREAFSLR---RASGRLGPPRSP 830

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>PALI_MAGGR (Q51MB1) pH-response regulator protein palI/RIM9|
          Length = 736

 Score = 29.6 bits (65), Expect = 3.3
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -2

Query: 102 DEVPRAANLAPLPGNEPGSPA*QA 31
           D++PRA +  PLPG EP  P  QA
Sbjct: 442 DDLPRAESPPPLPGTEPMPPVGQA 465

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>CT2NL_PONPY (Q5RDH2) CTTNBP2 N-terminal-like protein|
          Length = 639

 Score = 29.6 bits (65), Expect = 3.3
 Identities = 21/77 (27%), Positives = 30/77 (38%)
 Frame = +2

Query: 50  PGSFPGNGAKFAALGTSSPPGSCILPSPPLLACRFLGTGKQGTEMASNYVDTTGEEGRFH 229
           P   P +G+  +   T+S   +    S P+L  R LG+        S+Y    G   RFH
Sbjct: 403 PSPLPSSGSSLSPSSTASSSLTSSPCSSPVLTKRLLGSSASSPGYQSSY--QVGINQRFH 460

Query: 230 THGHHSNSTTPTGEAAS 280
              H   S     + AS
Sbjct: 461 AARHKFQSQADQDQQAS 477

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>CT2NL_MOUSE (Q99LJ0) CTTNBP2 N-terminal-like protein|
          Length = 638

 Score = 29.6 bits (65), Expect = 3.3
 Identities = 21/77 (27%), Positives = 30/77 (38%)
 Frame = +2

Query: 50  PGSFPGNGAKFAALGTSSPPGSCILPSPPLLACRFLGTGKQGTEMASNYVDTTGEEGRFH 229
           P   P +G+  +   T+S   +    S P+L  R LG+        S+Y    G   RFH
Sbjct: 403 PSHLPSSGSSLSPSSTASSSLTSSPCSSPVLTKRLLGSAASSPGYQSSY--QVGINQRFH 460

Query: 230 THGHHSNSTTPTGEAAS 280
              H   S     + AS
Sbjct: 461 AARHKFQSQADQDQQAS 477

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>CD2L5_HUMAN (Q14004) Cell division cycle 2-like protein kinase 5 (EC 2.7.11.22)|
           (CDC2-related protein kinase 5) (Cholinesterase-related
           cell division controller)
          Length = 1512

 Score = 24.3 bits (51), Expect(2) = 4.0
 Identities = 16/37 (43%), Positives = 18/37 (48%)
 Frame = +2

Query: 62  PGNGAKFAALGTSSPPGSCILPSPPLLACRFLGTGKQ 172
           PG  A  AA   +S   SC  P PPL   R L  GK+
Sbjct: 64  PGTAAAAAAAAAAS--SSCFSPGPPLEVKR-LARGKR 97



 Score = 23.5 bits (49), Expect(2) = 4.0
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 196 RGHHRGGGKVPHPRSPQQQHDADRR 270
           RG  R GG+    R P+   +A++R
Sbjct: 94  RGKRRAGGRQKRRRGPRAGQEAEKR 118

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>POLG_HCVJT (Q00269) Genome polyprotein [Contains: Core protein p21 (Capsid|
            protein C) (p21); Core protein p19; Envelope glycoprotein
            E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68)
            (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine
            protease/N
          Length = 3009

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 10/61 (16%)
 Frame = +2

Query: 17   VVSIPACHAGDPGSFPG----------NGAKFAALGTSSPPGSCILPSPPLLACRFLGTG 166
            ++    CH+ D  +  G           GA+   L T++PPGS  +P P +       TG
Sbjct: 1311 IIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPGSVTVPHPNIEEVALSNTG 1370

Query: 167  K 169
            +
Sbjct: 1371 E 1371

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>POLG_HCVJA (P26662) Genome polyprotein [Contains: Core protein p21 (Capsid|
            protein C) (p21); Core protein p19; Envelope glycoprotein
            E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68)
            (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine
            protease/N
          Length = 3009

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 10/61 (16%)
 Frame = +2

Query: 17   VVSIPACHAGDPGSFPG----------NGAKFAALGTSSPPGSCILPSPPLLACRFLGTG 166
            ++    CH+ D  +  G           GA+   L T++PPGS  +P P +       TG
Sbjct: 1311 IIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPGSITVPHPNIEEVALSNTG 1370

Query: 167  K 169
            +
Sbjct: 1371 E 1371

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>POLG_HCVCO (Q9WMX2) Genome polyprotein [Contains: Core protein p21 (Capsid|
            protein C) (p21); Core protein p19; Envelope glycoprotein
            E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68)
            (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine
            protease/N
          Length = 3009

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 10/61 (16%)
 Frame = +2

Query: 17   VVSIPACHAGDPGSFPG----------NGAKFAALGTSSPPGSCILPSPPLLACRFLGTG 166
            ++    CH+ D  +  G           GA+   L T++PPGS  +P P +       TG
Sbjct: 1311 IIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPGSVTVPHPNIEEVALSSTG 1370

Query: 167  K 169
            +
Sbjct: 1371 E 1371

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>POLG_HCVBK (P26663) Genome polyprotein [Contains: Core protein p21 (Capsid|
            protein C) (p21); Core protein p19; Envelope glycoprotein
            E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68)
            (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine
            protease/N
          Length = 3009

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 10/61 (16%)
 Frame = +2

Query: 17   VVSIPACHAGDPGSFPG----------NGAKFAALGTSSPPGSCILPSPPLLACRFLGTG 166
            ++    CH+ D  +  G           GA+   L T++PPGS  +P P +       TG
Sbjct: 1311 IIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPGSVTVPHPNIEEVALSNTG 1370

Query: 167  K 169
            +
Sbjct: 1371 E 1371

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>POLG_HCVEU (O39927) Genome polyprotein [Contains: Core protein p21 (Capsid|
            protein C) (p21); Core protein p19; Envelope glycoprotein
            E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68)
            (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine
            protease/N
          Length = 3017

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 10/61 (16%)
 Frame = +2

Query: 17   VVSIPACHAGDPGSFPG----------NGAKFAALGTSSPPGSCILPSPPLLACRFLGTG 166
            ++    CH+ DP +  G           G +   L T++PPGS  +P P +       TG
Sbjct: 1315 IIICDECHSTDPTTVLGVGTVLDQAETAGVRLTVLPTATPPGSVTVPHPNITETALPTTG 1374

Query: 167  K 169
            +
Sbjct: 1375 E 1375

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>SPT5H_CHICK (Q5ZI08) Transcription elongation factor SPT5 (DRB|
           sensitivity-inducing factor large subunit) (DSIF large
           subunit)
          Length = 1079

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 11/59 (18%)
 Frame = +1

Query: 79  VCRSRHLVSSGQLHPP----------LPSPPRLQISRHRE-TGDRNGFQLRGHHRGGGK 222
           VC++RHLV +G   P            P  PR+    H    G R GF   G  RG G+
Sbjct: 634 VCKTRHLVLAGGSKPRDVTNFTVGSFAPMSPRISSPMHPSGAGQRGGFGGGGMSRGRGR 692

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>POLG_HCVJL (Q68798) Genome polyprotein [Contains: Core protein p21 (Capsid|
            protein C) (p21); Core protein p19; Envelope glycoprotein
            E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68)
            (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine
            protease/N
          Length = 3021

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 10/49 (20%)
 Frame = +2

Query: 17   VVSIPACHAGDPGSFPG----------NGAKFAALGTSSPPGSCILPSP 133
            V+    CH+ DP +  G           G +   L T++PPGS  +P P
Sbjct: 1315 VIICDECHSTDPTTVLGIGTVLDQAETAGCRLTVLATATPPGSVTVPHP 1363

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>POLG_HCVJK (Q68801) Genome polyprotein [Contains: Core protein p21 (Capsid|
            protein C) (p21); Core protein p19; Envelope glycoprotein
            E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68)
            (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine
            protease/N
          Length = 3018

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 10/61 (16%)
 Frame = +2

Query: 17   VVSIPACHAGDPGSFPG----------NGAKFAALGTSSPPGSCILPSPPLLACRFLGTG 166
            V+    CHA D  S  G           GA+   L T++PPGS  +P   +      G G
Sbjct: 1316 VIICDECHAQDATSILGIGTVLDQAETAGARLVVLATATPPGSITVPHSNIEEVALTGEG 1375

Query: 167  K 169
            +
Sbjct: 1376 E 1376

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>EMID1_HUMAN (Q96A84) EMI domain-containing protein 1 precursor (Protein Emu1)|
           (Emilin and multimerin domain-containing protein 1)
          Length = 441

 Score = 24.6 bits (52), Expect(2) = 4.5
 Identities = 13/31 (41%), Positives = 13/31 (41%)
 Frame = +2

Query: 44  GDPGSFPGNGAKFAALGTSSPPGSCILPSPP 136
           G PGS PG        G   PPG    P PP
Sbjct: 227 GPPGS-PGRAGAVGTPGERGPPGPPGPPGPP 256



 Score = 23.1 bits (48), Expect(2) = 4.5
 Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
 Frame = +1

Query: 121 PPLP-SPPRLQISRHRETGDRNGFQLRGHHRGGGKVPHPRSP 243
           PP P  PP  +IS+H +    N F    +H   G    P  P
Sbjct: 258 PPAPVGPPHARISQHGDPLLSNTFTETNNHWPQGPTGPPGPP 299

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>CEZ2_HUMAN (Q8TE49) Zinc finger A20 domain-containing protein ? (EC 3.-.-.-)|
           (Zinc finger protein Cezanne 2) (OTU domain-containing
           protein 7)
          Length = 926

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 18/47 (38%), Positives = 23/47 (48%)
 Frame = -2

Query: 165 PVPRNLQARRGGEGRMQLPGGDEVPRAANLAPLPGNEPGSPA*QAGI 25
           P P   +A R   G    PGG    RA+   P+PG  P +PA Q+ I
Sbjct: 727 PGPAAGRAARAAAGGTASPGGG-ARRASASGPVPGRSPPAPARQSVI 772

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>POLG_HCVTR (Q81487) Genome polyprotein [Contains: Core protein p21 (Capsid|
            protein C) (p21); Core protein p19; Envelope glycoprotein
            E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68)
            (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine
            protease/N
          Length = 3022

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 10/49 (20%)
 Frame = +2

Query: 17   VVSIPACHAGDPGSFPG----------NGAKFAALGTSSPPGSCILPSP 133
            V+    CHA D  S  G           G +   L T++PPGS  +P P
Sbjct: 1319 VIICDECHAQDATSILGIGTVLDQAETAGVRLTVLATATPPGSITVPHP 1367

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>TILS_XYLFA (Q9PFJ8) tRNA(Ile)-lysidine synthase (EC 6.3.4.-)|
           (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase)
          Length = 437

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 15/25 (60%), Positives = 19/25 (76%)
 Frame = -2

Query: 180 SVPCFPVPRNLQARRGGEGRMQLPG 106
           +VP FP P  ++ARRGGE R+ LPG
Sbjct: 348 TVPGFPHPLCVRARRGGE-RLILPG 371

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>CO1A2_ONCMY (O93484) Collagen alpha-2(I) chain precursor|
          Length = 1356

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 25/102 (24%), Positives = 35/102 (34%), Gaps = 12/102 (11%)
 Frame = +2

Query: 29   PACHAGDPGSFPGNGAKFAALGTSSPPGSCILPSPPLLACRFLGTGKQGTEMASNYVDTT 208
            P  H G PG           LG + PPGS  LP P        G    G + +  Y +  
Sbjct: 1070 PVGHRGSPGH----------LGPAGPPGSPGLPGP-------AGPAGGGYDQSGGYDEYR 1112

Query: 209  GEEGRFHTHGHHSNST------------TPTGEAASPKNTRR 298
             ++  F    +  ++T            TP G   +P  T R
Sbjct: 1113 ADQPSFRAKDYEVDATIKSLNSQIENLLTPEGSKKNPARTCR 1154

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>COL14_CAEEL (P18834) Cuticle collagen 14|
          Length = 345

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = +2

Query: 35  CHAGDPGSFPGNGAKFAALGTSSPPGSCILPSPP 136
           CH G PG   G+G +  A G    PG    P PP
Sbjct: 153 CHRGPPGP-AGDGGRDGADGVDGTPGEIGPPGPP 185

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>CO3A1_CHICK (P12105) Collagen alpha-1(III) chain precursor (Fragments)|
          Length = 1262

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = +2

Query: 44  GDPGSFPGNGAKFAALGTSSPPGSCILPSPP 136
           GDPGS PG+  +  A G    PGS   P PP
Sbjct: 105 GDPGS-PGSPGRTGAPGPPGQPGSPGAPGPP 134

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>CD2L5_MOUSE (Q69ZA1) Cell division cycle 2-like protein kinase 5 (EC 2.7.11.22)|
           (CDC2-related protein kinase 5)
          Length = 1511

 Score = 24.6 bits (52), Expect(2) = 6.6
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +2

Query: 71  GAKFAALGTSSPPGSCILPSPPLLACRFLGTGKQ 172
           GA  AA   ++   SC  P PPL   R L  GK+
Sbjct: 65  GAAAAAAAVAAASSSCFSPGPPLEVKR-LARGKR 97



 Score = 22.3 bits (46), Expect(2) = 6.6
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 196 RGHHRGGGKVPHPRSPQQQHDADRR 270
           RG  R GG+    R P+   +A++R
Sbjct: 94  RGKRRPGGRRKRRRGPRAGQEAEKR 118

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>E75_MANSE (Q08893) Ecdysone-inducible protein E75|
          Length = 699

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
 Frame = +1

Query: 94  HLVSSGQLHPPLPSPPRLQ-ISRHRETGDRNGFQLRGHHRGGGK-VPHPRSPQQQHDADR 267
           HL  +G    P+  PPR + +    ++G  +G +      G G     PRS  ++H+ DR
Sbjct: 459 HLAHNGLTVTPVRQPPRYRKLDSPTDSGIESGNEKHERIVGTGSGCSSPRSSLEEHNEDR 518

Query: 268 RGGVAQE 288
           R  V+ +
Sbjct: 519 RPPVSAD 525

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>ADCY7_HUMAN (P51828) Adenylate cyclase type 7 (EC 4.6.1.1) (Adenylate cyclase|
           type VII) (ATP pyrophosphate-lyase 7) (Adenylyl cyclase
           7)
          Length = 1080

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +1

Query: 91  RHLVSSGQLHPPLPSPPRLQISRHRETGDRN 183
           R  VSSG+ H P    P+    RHR T DR+
Sbjct: 503 RESVSSGETHVPNGRRPKSVPQRHRRTPDRS 533

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>PBP1_YEAST (P53297) PAB1-binding protein 1|
          Length = 722

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 10/82 (12%)
 Frame = +2

Query: 44  GDPGSFPGNG-------AKFAALGTSSPPGSCILPSPPLLACRFLGTGKQGTEMASNYVD 202
           G  G+  G G       A F A G  +P G+   P   +     +G+G  G     + + 
Sbjct: 639 GSNGAEEGGGNISPHVPAGFMAAGPGAPMGAFGYPGG-IPFQGMMGSGPSGMPANGSAMH 697

Query: 203 TTGEEGRFHT---HGHHSNSTT 259
           + G    +H    HGHH++ST+
Sbjct: 698 SHGHSRNYHQTSHHGHHNSSTS 719

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>ZIMP7_HUMAN (Q8NF64) PIAS-like protein Zimp7|
          Length = 920

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
 Frame = -2

Query: 165 PVPRNLQARRGGE---GRMQLPGGDEVPRAANLAPLPGNEP 52
           P+PR    R   E   G+  L GG   P  A  AP PG  P
Sbjct: 259 PLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPGQPP 299

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>SHC2_MOUSE (Q8BMC3) SHC transforming protein 2 (SH2 domain protein C2) (Src|
           homology 2 domain-containing transforming protein C2)
           (Protein Sck) (Protein Sli)
          Length = 548

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
 Frame = +2

Query: 62  PGNGAKFAALGTSSPPGSCILPSPPLLACRFLGTGKQGTEMASNYVDTTGEEGRF-HTHG 238
           PG  A  A LG   P  +   P P L  CR  G+G +G  +  +  D    +G F H   
Sbjct: 32  PGVPALAAVLGACEPRCAAPCPLPALGRCR--GSGTRGARVTPDVADEWVRKGGFIHKPA 89

Query: 239 H 241
           H
Sbjct: 90  H 90

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>ZDHC1_MOUSE (Q8R0N9) Probable palmitoyltransferase ZDHHC1 (EC 2.3.1.-) (Zinc|
           finger DHHC domain-containing protein 1) (DHHC-1)
          Length = 484

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 7/34 (20%)
 Frame = +1

Query: 88  SRHLVSSGQLHPPLPS-------PPRLQISRHRE 168
           S+ L + GQ+ PPLPS       PPR+Q  + R+
Sbjct: 336 SQFLATQGQVEPPLPSSSDTLALPPRIQPQKKRK 369

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>UN119_RAT (Q62885) Unc-119 protein homolog (Retinal protein 4) (RRG4)|
          Length = 240

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -2

Query: 150 LQARRGGEGRMQLPGGDEVPRAANLAPLPGNEPGSPA 40
           ++ ++GG G    PG + VP A+N +  P  EPG+ A
Sbjct: 1   MKVKKGGGGTG--PGAEPVPGASNRSVEPTREPGAEA 35

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>CSP_DROME (Q03751) Cysteine string protein|
          Length = 249

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -3

Query: 254 CCCCGDRGCGTFPPP 210
           CCCC +  CG F PP
Sbjct: 127 CCCCCNFCCGKFKPP 141

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>CCD95_HUMAN (Q8NBZ0) Coiled-coil domain-containing protein 95|
          Length = 244

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = +2

Query: 5   RCSIVVSIPACHAGDPGSFPGNGAKFAALGTSSPPGSCILPSPPLLACRFLGT 163
           +  + V  P C  G P +FPG G+  A +GT+  P    LP P +     L T
Sbjct: 169 KLKMAVGPPDCPVGGPLTFPGRGSG-AGVGTTLTP----LPPPKMPPPTILST 216

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>PO2F1_XENLA (P16143) POU domain, class 2, transcription factor 1|
           (Octamer-binding transcription factor 1) (Oct-1) (OTF-1)
           (NF-A1) (XOct1)
          Length = 760

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 20/74 (27%), Positives = 31/74 (41%)
 Frame = +2

Query: 50  PGSFPGNGAKFAALGTSSPPGSCILPSPPLLACRFLGTGKQGTEMASNYVDTTGEEGRFH 229
           PG+   + A  A + +++PP S +L SP L       +       AS+   T GE     
Sbjct: 514 PGTTGTSSANTATVISTAPPVSSVLTSPSL-------SSSPSATAASSEASTAGETSTTQ 566

Query: 230 THGHHSNSTTPTGE 271
           T      S+  TG+
Sbjct: 567 TTSTPMTSSLNTGQ 580

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>ZIMP7_MOUSE (Q8CIE2) PIAS-like protein Zimp7|
          Length = 920

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
 Frame = -2

Query: 165 PVPRNLQARRGGE---GRMQLPGGDEVPRAANLAPLPGNEPGSPA*QAG 28
           P+PR    R   E   G+  L GG      A  AP PG  PG  +  AG
Sbjct: 259 PLPRQGIKRAYSEVYPGQQYLQGGQYAANTAQYAPGPGQPPGPASSYAG 307

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>SEM4C_HUMAN (Q9C0C4) Semaphorin-4C precursor|
          Length = 833

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
 Frame = +1

Query: 124 PLPSPPRLQISRHRETGDRNGF---QLRGHHRGGGKVPHP 234
           PLPSP RL +   R + + NG+   QL G  RGG   P P
Sbjct: 769 PLPSPTRLHLGGGRNS-NANGYVRLQLGGEDRGGLGHPLP 807

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>RSRC1_HUMAN (Q96IZ7) Arginine/serine-rich coiled coil protein 1|
          Length = 334

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +1

Query: 154 SRHRETGDRNGFQLRGHHRGGGKVPHPRSPQQQHDADRRGGVAQEYAEE 300
           S+ R    R+  +LR H R   +  H R+  +  D +RR G  +E  E+
Sbjct: 101 SKSRTRRSRSRPRLRSHSRSSERSSHRRTRSRSRDRERRKGRDKEKREK 149

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>ZIC3_HUMAN (O60481) Zinc finger protein ZIC 3 (Zinc finger protein of the|
           cerebellum 3)
          Length = 467

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 13/41 (31%), Positives = 16/41 (39%)
 Frame = +2

Query: 158 GTGKQGTEMASNYVDTTGEEGRFHTHGHHSNSTTPTGEAAS 280
           G     T   S Y +  G     H H HH++     G AAS
Sbjct: 69  GQSSAFTPQGSGYANALGHHHHHHHHHHHTSQVPSYGGAAS 109

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>PPRB_HUMAN (Q15648) Peroxisome proliferator-activated receptor-binding protein|
            (PBP) (PPAR-binding protein) (Thyroid hormone
            receptor-associated protein complex 220 kDa component)
            (Trap220) (Thyroid receptor-interacting protein 2)
            (TRIP-2) (p53 regulator
          Length = 1581

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 18/77 (23%), Positives = 35/77 (45%)
 Frame = +2

Query: 50   PGSFPGNGAKFAALGTSSPPGSCILPSPPLLACRFLGTGKQGTEMASNYVDTTGEEGRFH 229
            P S  G+ +  +A  + +PPG    P P +      GT   G   + +   ++G      
Sbjct: 1034 PTSTGGSKSPGSAGRSQTPPGVATPPIPKITIQIPKGTVMVGKPSSHSQYTSSGSVSSSG 1093

Query: 230  THGHHSNSTTPTGEAAS 280
            +  HHS+S++ +  A++
Sbjct: 1094 SKSHHSHSSSSSSSAST 1110

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>ROK1_CANAL (Q9Y7C4) ATP-dependent RNA helicase CHR1 (EC 3.6.1.-)|
          Length = 578

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +2

Query: 161 TGKQGTEMASNYVDTTGEEGRFHTHGHHSNSTTPTGE 271
           T KQ  +  S   +   E   FHT  H+SNSTT  G+
Sbjct: 31  TQKQKHKQESLLNEVERETDFFHTRKHNSNSTTTNGK 67

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>CO4A1_DROME (P08120) Collagen alpha-1(IV) chain precursor|
          Length = 1775

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 17/59 (28%), Positives = 22/59 (37%)
 Frame = +2

Query: 44  GDPGSFPGNGAKFAALGTSSPPGSCILPSPPLLACRFLGTGKQGTEMASNYVDTTGEEG 220
           G+PGS   +  K  A G    PG   +P PP         G+ G+     Y    G  G
Sbjct: 746 GEPGSCALDEIKMPAKGNKGEPGQTGMPGPP---------GEDGSPGERGYTGLKGNTG 795

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>Y674_TREPA (O83680) Hypothetical protein TP0674|
          Length = 202

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 10/37 (27%)
 Frame = +1

Query: 196 RGHHRGGGKV----------PHPRSPQQQHDADRRGG 276
           +GHH  GG V           HP + +  H A+RRGG
Sbjct: 151 KGHHSKGGSVLAPSVKRYVQAHPHAGELFHPAERRGG 187


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,355,547
Number of Sequences: 219361
Number of extensions: 1079564
Number of successful extensions: 5004
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 4481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4979
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2511994855
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result