ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast52b10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MRCKG_MOUSE (Q80UW5) Serine/threonine-protein kinase MRCK gamma ... 29 2.4
2METK_SYNP6 (Q5N1I9) S-adenosylmethionine synthetase (EC 2.5.1.6)... 28 5.3
3CU062_MOUSE (Q9D4G1) Putative protein C21orf62 homolog 28 5.3
4ALR2_THETN (Q8R860) Alanine racemase 2 (EC 5.1.1.1) 28 5.3
5FOXD1_HUMAN (Q16676) Forkhead box protein D1 (Forkhead-related p... 27 9.1
6ALR1_STAAR (Q6GF03) Alanine racemase 1 (EC 5.1.1.1) 27 9.1

>MRCKG_MOUSE (Q80UW5) Serine/threonine-protein kinase MRCK gamma (EC 2.7.11.1)|
           (CDC42-binding protein kinase gamma) (Myotonic dystrophy
           kinase-related CDC42-binding kinase gamma) (Myotonic
           dystrophy protein kinase-like alpha) (MRCK gamma)
           (DMPK-like gamma
          Length = 1551

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 13/24 (54%), Positives = 18/24 (75%)
 Frame = +1

Query: 121 GAGRPDGQSRLSQLRQEKEMLRER 192
           G G P+GQS+ +QLR+E   LRE+
Sbjct: 594 GIGSPEGQSQEAQLRKEVAALREQ 617



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>METK_SYNP6 (Q5N1I9) S-adenosylmethionine synthetase (EC 2.5.1.6) (Methionine|
           adenosyltransferase) (AdoMet synthetase) (MAT)
          Length = 406

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +3

Query: 117 SWSRPARRPVEVISAQAGERNVAREMAG--MRFHYRPHPLGSVRHFS 251
           S++    RPV V+    G   VA E+    +R H+  HP G + HF+
Sbjct: 310 SYAIGVARPVSVLVETFGTGKVADEVLLDLVRKHFELHPAGIIEHFN 356



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>CU062_MOUSE (Q9D4G1) Putative protein C21orf62 homolog|
          Length = 230

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +1

Query: 139 GQSRLSQLRQEKEMLRERWQGCVFIIVLILSEASGTS 249
           GQS L   R+E   L + WQ C+FI  L ++  +G S
Sbjct: 154 GQSLLIHSRREGSSLYKGWQTCMFISFLDVALFNGDS 190



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>ALR2_THETN (Q8R860) Alanine racemase 2 (EC 5.1.1.1)|
          Length = 388

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
 Frame = -3

Query: 332 VCLDRTMIXARSDGELSVSERRIVLSPRE-----VPDASERMRTIMKTHPCHLSRNI 177
           VC+D+TMI       + V +  ++   +E       D ++++RTI     C +SR +
Sbjct: 313 VCMDQTMIDVTEVEGVEVGDEVVIFGEQEGKRITADDIAKKLRTIPHEVYCGISRRV 369



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>FOXD1_HUMAN (Q16676) Forkhead box protein D1 (Forkhead-related protein FKHL8)|
           (Forkhead-related transcription factor 4) (FREAC-4)
          Length = 465

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +3

Query: 183 AREMAGMRFHYRPHPLGS 236
           A E+A   F YRPHPLG+
Sbjct: 319 AAELARTAFGYRPHPLGA 336



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>ALR1_STAAR (Q6GF03) Alanine racemase 1 (EC 5.1.1.1)|
          Length = 382

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
 Frame = -3

Query: 350 HTCACL--VCLDRTMIXA-----RSDGELSVSERRIVLSPREVPDASERMRTIMKTHPCH 192
           H C  +  VC+D+T++         D  + +   R   SP+ V  A+E+  TI     C+
Sbjct: 302 HQCEVIGRVCMDQTIVKVPDQVKAGDSVILIDNHRE--SPQSVEVAAEKQHTINYEVLCN 359

Query: 191 LSRNI 177
           LSR +
Sbjct: 360 LSRRL 364


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,738,167
Number of Sequences: 219361
Number of extensions: 930611
Number of successful extensions: 2476
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2476
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 1380984984
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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