ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast52b06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1IF35_HUMAN (O00303) Eukaryotic translation initiation factor 3 s... 30 2.3
2IF35_MOUSE (Q9DCH4) Eukaryotic translation initiation factor 3 s... 29 5.1

>IF35_HUMAN (O00303) Eukaryotic translation initiation factor 3 subunit 5|
           (eIF-3 epsilon) (eIF3 p47 subunit) (eIF3f)
          Length = 357

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 315 EHQVLIYRYFAAGAPVPVHLVL 380
           EH VLI+ Y++  AP P+HL +
Sbjct: 181 EHSVLIHEYYSREAPNPIHLTV 202



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>IF35_MOUSE (Q9DCH4) Eukaryotic translation initiation factor 3 subunit 5|
           (eIF-3 epsilon) (eIF3 p47 subunit) (eIF3f)
          Length = 361

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 315 EHQVLIYRYFAAGAPVPVHLVL 380
           EH VLI+ Y++  +P P+HL +
Sbjct: 185 EHSVLIHEYYSRESPNPIHLTV 206


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.315    0.130    0.441 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,782,415
Number of Sequences: 219361
Number of extensions: 387891
Number of successful extensions: 1695
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1695
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2278320915
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
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