ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast52b05 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_192784.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1341 Score = 216 bits (109), Expect = 5e-53 Identities = 172/193 (89%) Strand = Plus / Plus Query: 227 gtggccacgatgcgccaagggttcgcgagggcgctagtgccgtactatccggtggccggc 286 ||||||| ||||||| | ||||||||||||||||| ||||||||||| |||||||||||| Sbjct: 229 gtggccaggatgcgcgacgggttcgcgagggcgctcgtgccgtactacccggtggccggc 288 Query: 287 cgcatcgcggagccctccccgggcgacctcgtggtggactgcaccggcgagggcgtctgg 346 || ||||||||||| |||| || ||| | ||||||||||||||||||||||| || ||| Sbjct: 289 cggatcgcggagccggcccccggggacgtggtggtggactgcaccggcgagggggtgtgg 348 Query: 347 ttcgtggaggccacggcgagctgctcgctcgccgacgtcaagggcctcgagcgcccgctg 406 |||||||||||||||||||||||| ||||||||||||| || ||||||||||||||| Sbjct: 349 ttcgtggaggccacggcgagctgcacgctcgccgacgtgaacaacctcgagcgcccgctc 408 Query: 407 ctcatccccaagg 419 |||||| |||||| Sbjct: 409 ctcatcgccaagg 421 Score = 127 bits (64), Expect = 3e-26 Identities = 115/132 (87%) Strand = Plus / Plus Query: 64 gcccaccgtcgtcaagtcgccgccggcgctcgtcccaccggcggagcccaccccgggcgg 123 |||||||||| ||||||| |||||| ||| ||||| || |||| |||||||||| |||| Sbjct: 54 gcccaccgtctccaagtcggcgccggagctggtcccgcccgcggggcccaccccgcgcgg 113 Query: 124 cgtgctaccgctctcctccatcgacaagaccgccgccgtccgcgtctcggtcgacttcat 183 || ||| ||||| || |||||||||||||||||||| || ||||||||||| |||||||| Sbjct: 114 cgcgctgccgctgtcgtccatcgacaagaccgccgcggtgcgcgtctcggtggacttcat 173 Query: 184 ccaggtcttccc 195 |||||| ||||| Sbjct: 174 ccaggtgttccc 185
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 216 bits (109), Expect = 5e-53 Identities = 172/193 (89%) Strand = Plus / Minus Query: 227 gtggccacgatgcgccaagggttcgcgagggcgctagtgccgtactatccggtggccggc 286 ||||||| ||||||| | ||||||||||||||||| ||||||||||| |||||||||||| Sbjct: 24392639 gtggccaggatgcgcgacgggttcgcgagggcgctcgtgccgtactacccggtggccggc 24392580 Query: 287 cgcatcgcggagccctccccgggcgacctcgtggtggactgcaccggcgagggcgtctgg 346 || ||||||||||| |||| || ||| | ||||||||||||||||||||||| || ||| Sbjct: 24392579 cggatcgcggagccggcccccggggacgtggtggtggactgcaccggcgagggggtgtgg 24392520 Query: 347 ttcgtggaggccacggcgagctgctcgctcgccgacgtcaagggcctcgagcgcccgctg 406 |||||||||||||||||||||||| ||||||||||||| || ||||||||||||||| Sbjct: 24392519 ttcgtggaggccacggcgagctgcacgctcgccgacgtgaacaacctcgagcgcccgctc 24392460 Query: 407 ctcatccccaagg 419 |||||| |||||| Sbjct: 24392459 ctcatcgccaagg 24392447 Score = 168 bits (85), Expect = 1e-38 Identities = 112/121 (92%) Strand = Plus / Minus Query: 76 caagtcgccgccggcgctcgtcccaccggcggagcccaccccgggcggcgtgctaccgct 135 |||||||||||||||||| || || ||||||| |||||||||||||||| || ||||| Sbjct: 24396669 caagtcgccgccggcgctggtgcccccggcggggcccaccccgggcggctccctcccgct 24396610 Query: 136 ctcctccatcgacaagaccgccgccgtccgcgtctcggtcgacttcatccaggtcttccc 195 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 24396609 ctcctccatcgacaagaccgccgccgtccgcgtctccgtcgacttcatccaggtcttccc 24396550 Query: 196 c 196 | Sbjct: 24396549 c 24396549 Score = 127 bits (64), Expect = 3e-26 Identities = 115/132 (87%) Strand = Plus / Minus Query: 64 gcccaccgtcgtcaagtcgccgccggcgctcgtcccaccggcggagcccaccccgggcgg 123 |||||||||| ||||||| |||||| ||| ||||| || |||| |||||||||| |||| Sbjct: 24392814 gcccaccgtctccaagtcggcgccggagctggtcccgcccgcggggcccaccccgcgcgg 24392755 Query: 124 cgtgctaccgctctcctccatcgacaagaccgccgccgtccgcgtctcggtcgacttcat 183 || ||| ||||| || |||||||||||||||||||| || ||||||||||| |||||||| Sbjct: 24392754 cgcgctgccgctgtcgtccatcgacaagaccgccgcggtgcgcgtctcggtggacttcat 24392695 Query: 184 ccaggtcttccc 195 |||||| ||||| Sbjct: 24392694 ccaggtgttccc 24392683 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 320 gtggactgcaccggcgagggcgtctggttcgtggaggcc 358 ||||| |||||||||||||||| |||||||||||||||| Sbjct: 10563010 gtggagtgcaccggcgagggcgcctggttcgtggaggcc 10562972 Score = 54.0 bits (27), Expect = 4e-04 Identities = 107/131 (81%), Gaps = 2/131 (1%) Strand = Plus / Minus Query: 248 ttcgcgagggcgctagtgccgtactatccggtggccggccgcatcgcggagccc-tcccc 306 ||||| |||||||| || | ||||| || || |||||||||||||||||||| ||||| Sbjct: 24396491 ttcgccagggcgctcgtccactactaccccgtcgccggccgcatcgcggagccggtcccc 24396432 Query: 307 gggcgacctcgtggtggactgcaccggcgagggcgtctggttcgtggaggccacggcgag 366 ||| || | || | | ||||||||||| || || || |||||| | |||||| |||||| Sbjct: 24396431 ggg-gagcccgagatcgactgcaccggggaaggggtgtggttcatcgaggccgaggcgag 24396373 Query: 367 ctgctcgctcg 377 ||||||||||| Sbjct: 24396372 ctgctcgctcg 24396362 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 320 gtggactgcaccggcgagggcg 341 |||||||||||||||||||||| Sbjct: 40501721 gtggactgcaccggcgagggcg 40501742 Score = 40.1 bits (20), Expect = 5.9 Identities = 32/36 (88%) Strand = Plus / Minus Query: 391 cctcgagcgcccgctgctcatccccaaggcggagct 426 |||||||||||| ||| ||||||||||| |||||| Sbjct: 24396348 cctcgagcgccccctgtgcatccccaaggaggagct 24396313
>dbj|AP002866.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0410E01 Length = 166753 Score = 216 bits (109), Expect = 5e-53 Identities = 172/193 (89%) Strand = Plus / Minus Query: 227 gtggccacgatgcgccaagggttcgcgagggcgctagtgccgtactatccggtggccggc 286 ||||||| ||||||| | ||||||||||||||||| ||||||||||| |||||||||||| Sbjct: 138543 gtggccaggatgcgcgacgggttcgcgagggcgctcgtgccgtactacccggtggccggc 138484 Query: 287 cgcatcgcggagccctccccgggcgacctcgtggtggactgcaccggcgagggcgtctgg 346 || ||||||||||| |||| || ||| | ||||||||||||||||||||||| || ||| Sbjct: 138483 cggatcgcggagccggcccccggggacgtggtggtggactgcaccggcgagggggtgtgg 138424 Query: 347 ttcgtggaggccacggcgagctgctcgctcgccgacgtcaagggcctcgagcgcccgctg 406 |||||||||||||||||||||||| ||||||||||||| || ||||||||||||||| Sbjct: 138423 ttcgtggaggccacggcgagctgcacgctcgccgacgtgaacaacctcgagcgcccgctc 138364 Query: 407 ctcatccccaagg 419 |||||| |||||| Sbjct: 138363 ctcatcgccaagg 138351 Score = 168 bits (85), Expect = 1e-38 Identities = 112/121 (92%) Strand = Plus / Minus Query: 76 caagtcgccgccggcgctcgtcccaccggcggagcccaccccgggcggcgtgctaccgct 135 |||||||||||||||||| || || ||||||| |||||||||||||||| || ||||| Sbjct: 142573 caagtcgccgccggcgctggtgcccccggcggggcccaccccgggcggctccctcccgct 142514 Query: 136 ctcctccatcgacaagaccgccgccgtccgcgtctcggtcgacttcatccaggtcttccc 195 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 142513 ctcctccatcgacaagaccgccgccgtccgcgtctccgtcgacttcatccaggtcttccc 142454 Query: 196 c 196 | Sbjct: 142453 c 142453 Score = 127 bits (64), Expect = 3e-26 Identities = 115/132 (87%) Strand = Plus / Minus Query: 64 gcccaccgtcgtcaagtcgccgccggcgctcgtcccaccggcggagcccaccccgggcgg 123 |||||||||| ||||||| |||||| ||| ||||| || |||| |||||||||| |||| Sbjct: 138718 gcccaccgtctccaagtcggcgccggagctggtcccgcccgcggggcccaccccgcgcgg 138659 Query: 124 cgtgctaccgctctcctccatcgacaagaccgccgccgtccgcgtctcggtcgacttcat 183 || ||| ||||| || |||||||||||||||||||| || ||||||||||| |||||||| Sbjct: 138658 cgcgctgccgctgtcgtccatcgacaagaccgccgcggtgcgcgtctcggtggacttcat 138599 Query: 184 ccaggtcttccc 195 |||||| ||||| Sbjct: 138598 ccaggtgttccc 138587 Score = 54.0 bits (27), Expect = 4e-04 Identities = 107/131 (81%), Gaps = 2/131 (1%) Strand = Plus / Minus Query: 248 ttcgcgagggcgctagtgccgtactatccggtggccggccgcatcgcggagccc-tcccc 306 ||||| |||||||| || | ||||| || || |||||||||||||||||||| ||||| Sbjct: 142395 ttcgccagggcgctcgtccactactaccccgtcgccggccgcatcgcggagccggtcccc 142336 Query: 307 gggcgacctcgtggtggactgcaccggcgagggcgtctggttcgtggaggccacggcgag 366 ||| || | || | | ||||||||||| || || || |||||| | |||||| |||||| Sbjct: 142335 ggg-gagcccgagatcgactgcaccggggaaggggtgtggttcatcgaggccgaggcgag 142277 Query: 367 ctgctcgctcg 377 ||||||||||| Sbjct: 142276 ctgctcgctcg 142266 Score = 40.1 bits (20), Expect = 5.9 Identities = 32/36 (88%) Strand = Plus / Minus Query: 391 cctcgagcgcccgctgctcatccccaaggcggagct 426 |||||||||||| ||| ||||||||||| |||||| Sbjct: 142252 cctcgagcgccccctgtgcatccccaaggaggagct 142217
>ref|NM_192785.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1275 Score = 168 bits (85), Expect = 1e-38 Identities = 112/121 (92%) Strand = Plus / Plus Query: 76 caagtcgccgccggcgctcgtcccaccggcggagcccaccccgggcggcgtgctaccgct 135 |||||||||||||||||| || || ||||||| |||||||||||||||| || ||||| Sbjct: 21 caagtcgccgccggcgctggtgcccccggcggggcccaccccgggcggctccctcccgct 80 Query: 136 ctcctccatcgacaagaccgccgccgtccgcgtctcggtcgacttcatccaggtcttccc 195 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 81 ctcctccatcgacaagaccgccgccgtccgcgtctccgtcgacttcatccaggtcttccc 140 Query: 196 c 196 | Sbjct: 141 c 141 Score = 54.0 bits (27), Expect = 4e-04 Identities = 107/131 (81%), Gaps = 2/131 (1%) Strand = Plus / Plus Query: 248 ttcgcgagggcgctagtgccgtactatccggtggccggccgcatcgcggagccc-tcccc 306 ||||| |||||||| || | ||||| || || |||||||||||||||||||| ||||| Sbjct: 199 ttcgccagggcgctcgtccactactaccccgtcgccggccgcatcgcggagccggtcccc 258 Query: 307 gggcgacctcgtggtggactgcaccggcgagggcgtctggttcgtggaggccacggcgag 366 ||| || | || | | ||||||||||| || || || |||||| | |||||| |||||| Sbjct: 259 ggg-gagcccgagatcgactgcaccggggaaggggtgtggttcatcgaggccgaggcgag 317 Query: 367 ctgctcgctcg 377 ||||||||||| Sbjct: 318 ctgctcgctcg 328 Score = 40.1 bits (20), Expect = 5.9 Identities = 32/36 (88%) Strand = Plus / Plus Query: 391 cctcgagcgcccgctgctcatccccaaggcggagct 426 |||||||||||| ||| ||||||||||| |||||| Sbjct: 342 cctcgagcgccccctgtgcatccccaaggaggagct 377
>dbj|AK061211.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-210-D05, full insert sequence Length = 1556 Score = 168 bits (85), Expect = 1e-38 Identities = 112/121 (92%) Strand = Plus / Plus Query: 76 caagtcgccgccggcgctcgtcccaccggcggagcccaccccgggcggcgtgctaccgct 135 |||||||||||||||||| || || ||||||| |||||||||||||||| || ||||| Sbjct: 62 caagtcgccgccggcgctggtgcccccggcggggcccaccccgggcggctccctcccgct 121 Query: 136 ctcctccatcgacaagaccgccgccgtccgcgtctcggtcgacttcatccaggtcttccc 195 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 122 ctcctccatcgacaagaccgccgccgtccgcgtctccgtcgacttcatccaggtcttccc 181 Query: 196 c 196 | Sbjct: 182 c 182 Score = 54.0 bits (27), Expect = 4e-04 Identities = 107/131 (81%), Gaps = 2/131 (1%) Strand = Plus / Plus Query: 248 ttcgcgagggcgctagtgccgtactatccggtggccggccgcatcgcggagccc-tcccc 306 ||||| |||||||| || | ||||| || || |||||||||||||||||||| ||||| Sbjct: 240 ttcgccagggcgctcgtccactactaccccgtcgccggccgcatcgcggagccggtcccc 299 Query: 307 gggcgacctcgtggtggactgcaccggcgagggcgtctggttcgtggaggccacggcgag 366 ||| || | || | | ||||||||||| || || || |||||| | |||||| |||||| Sbjct: 300 ggg-gagcccgagatcgactgcaccggggaaggggtgtggttcatcgaggccgaggcgag 358 Query: 367 ctgctcgctcg 377 ||||||||||| Sbjct: 359 ctgctcgctcg 369 Score = 40.1 bits (20), Expect = 5.9 Identities = 32/36 (88%) Strand = Plus / Plus Query: 391 cctcgagcgcccgctgctcatccccaaggcggagct 426 |||||||||||| ||| ||||||||||| |||||| Sbjct: 383 cctcgagcgccccctgtgcatccccaaggaggagct 418
>dbj|AK069226.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023014K19, full insert sequence Length = 1562 Score = 161 bits (81), Expect = 2e-36 Identities = 111/121 (91%) Strand = Plus / Plus Query: 76 caagtcgccgccggcgctcgtcccaccggcggagcccaccccgggcggcgtgctaccgct 135 |||||||||||||| ||| || || ||||||| |||||||||||||||| || ||||| Sbjct: 96 caagtcgccgccggtgctggtgcccccggcggggcccaccccgggcggctccctcccgct 155 Query: 136 ctcctccatcgacaagaccgccgccgtccgcgtctcggtcgacttcatccaggtcttccc 195 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 156 ctcctccatcgacaagaccgccgccgtccgcgtctccgtcgacttcatccaggtcttccc 215 Query: 196 c 196 | Sbjct: 216 c 216 Score = 54.0 bits (27), Expect = 4e-04 Identities = 107/131 (81%), Gaps = 2/131 (1%) Strand = Plus / Plus Query: 248 ttcgcgagggcgctagtgccgtactatccggtggccggccgcatcgcggagccc-tcccc 306 ||||| |||||||| || | ||||| || || |||||||||||||||||||| ||||| Sbjct: 274 ttcgccagggcgctcgtccactactaccccgtcgccggccgcatcgcggagccggtcccc 333 Query: 307 gggcgacctcgtggtggactgcaccggcgagggcgtctggttcgtggaggccacggcgag 366 ||| || | || | | ||||||||||| || || || |||||| | |||||| |||||| Sbjct: 334 ggg-gagcccgagatcgactgcaccggggaaggggtgtggttcatcgaggccgaggcgag 392 Query: 367 ctgctcgctcg 377 ||||||||||| Sbjct: 393 ctgctcgctcg 403 Score = 40.1 bits (20), Expect = 5.9 Identities = 32/36 (88%) Strand = Plus / Plus Query: 391 cctcgagcgcccgctgctcatccccaaggcggagct 426 |||||||||||| ||| ||||||||||| |||||| Sbjct: 417 cctcgagcgccccctgtgcatccccaaggaggagct 452
>ref|XM_478930.1| Oryza sativa (japonica cultivar-group), mRNA Length = 669 Score = 79.8 bits (40), Expect = 7e-12 Identities = 52/56 (92%) Strand = Plus / Plus Query: 137 tcctccatcgacaagaccgccgccgtccgcgtctcggtcgacttcatccaggtctt 192 |||||||| |||||||||||||||||||| |||| |||||||||||||||||||| Sbjct: 166 tcctccattgacaagaccgccgccgtccgtgtctttgtcgacttcatccaggtctt 221
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 79.8 bits (40), Expect = 7e-12 Identities = 52/56 (92%) Strand = Plus / Minus Query: 137 tcctccatcgacaagaccgccgccgtccgcgtctcggtcgacttcatccaggtctt 192 |||||||| |||||||||||||||||||| |||| |||||||||||||||||||| Sbjct: 23869290 tcctccattgacaagaccgccgccgtccgtgtctttgtcgacttcatccaggtctt 23869235 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 314 ctcgtggtggactgcaccggcgagggcgt 342 ||||| || |||||||||||||||||||| Sbjct: 8066404 ctcgtcgtcgactgcaccggcgagggcgt 8066376
>dbj|AP005149.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0005G07 Length = 142850 Score = 79.8 bits (40), Expect = 7e-12 Identities = 52/56 (92%) Strand = Plus / Minus Query: 137 tcctccatcgacaagaccgccgccgtccgcgtctcggtcgacttcatccaggtctt 192 |||||||| |||||||||||||||||||| |||| |||||||||||||||||||| Sbjct: 24217 tcctccattgacaagaccgccgccgtccgtgtctttgtcgacttcatccaggtctt 24162
>dbj|AP003985.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1047_C01 Length = 97427 Score = 79.8 bits (40), Expect = 7e-12 Identities = 52/56 (92%) Strand = Plus / Minus Query: 137 tcctccatcgacaagaccgccgccgtccgcgtctcggtcgacttcatccaggtctt 192 |||||||| |||||||||||||||||||| |||| |||||||||||||||||||| Sbjct: 57790 tcctccattgacaagaccgccgccgtccgtgtctttgtcgacttcatccaggtctt 57735
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 77.8 bits (39), Expect = 3e-11 Identities = 60/67 (89%) Strand = Plus / Minus Query: 131 ccgctctcctccatcgacaagaccgccgccgtccgcgtctcggtcgacttcatccaggtc 190 ||||| |||||||||||||||||||||||||| |||||| |||||||||||| ||||| Sbjct: 10455380 ccgctatcctccatcgacaagaccgccgccgtatgcgtcttcgtcgacttcatctaggtc 10455321 Query: 191 ttccccc 197 | ||||| Sbjct: 10455320 tcccccc 10455314
>gb|AC137931.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0039F10, complete sequence Length = 139714 Score = 77.8 bits (39), Expect = 3e-11 Identities = 60/67 (89%) Strand = Plus / Minus Query: 131 ccgctctcctccatcgacaagaccgccgccgtccgcgtctcggtcgacttcatccaggtc 190 ||||| |||||||||||||||||||||||||| |||||| |||||||||||| ||||| Sbjct: 111933 ccgctatcctccatcgacaagaccgccgccgtatgcgtcttcgtcgacttcatctaggtc 111874 Query: 191 ttccccc 197 | ||||| Sbjct: 111873 tcccccc 111867
>gb|AC118668.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0036G02, from chromosome 3, complete sequence Length = 153308 Score = 77.8 bits (39), Expect = 3e-11 Identities = 60/67 (89%) Strand = Plus / Minus Query: 131 ccgctctcctccatcgacaagaccgccgccgtccgcgtctcggtcgacttcatccaggtc 190 ||||| |||||||||||||||||||||||||| |||||| |||||||||||| ||||| Sbjct: 11193 ccgctatcctccatcgacaagaccgccgccgtatgcgtcttcgtcgacttcatctaggtc 11134 Query: 191 ttccccc 197 | ||||| Sbjct: 11133 tcccccc 11127
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 77.8 bits (39), Expect = 3e-11 Identities = 60/67 (89%) Strand = Plus / Minus Query: 131 ccgctctcctccatcgacaagaccgccgccgtccgcgtctcggtcgacttcatccaggtc 190 ||||| |||||||||||||||||||||||||| |||||| |||||||||||| ||||| Sbjct: 10453481 ccgctatcctccatcgacaagaccgccgccgtatgcgtcttcgtcgacttcatctaggtc 10453422 Query: 191 ttccccc 197 | ||||| Sbjct: 10453421 tcccccc 10453415
>ref|XM_473108.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1350 Score = 65.9 bits (33), Expect = 1e-07 Identities = 42/45 (93%) Strand = Plus / Plus Query: 314 ctcgtggtggactgcaccggcgagggcgtctggttcgtggaggcc 358 |||||||||||||||||||||||||| |||| |||||| |||||| Sbjct: 262 ctcgtggtggactgcaccggcgagggggtctcgttcgtcgaggcc 306
>emb|AL731626.4|OSJN00271 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0002J11, complete sequence Length = 143582 Score = 65.9 bits (33), Expect = 1e-07 Identities = 42/45 (93%) Strand = Plus / Minus Query: 314 ctcgtggtggactgcaccggcgagggcgtctggttcgtggaggcc 358 |||||||||||||||||||||||||| |||| |||||| |||||| Sbjct: 105429 ctcgtggtggactgcaccggcgagggggtctcgttcgtcgaggcc 105385
>emb|AL662969.3|OSJN00169 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0043L24, complete sequence Length = 164577 Score = 65.9 bits (33), Expect = 1e-07 Identities = 42/45 (93%) Strand = Plus / Minus Query: 314 ctcgtggtggactgcaccggcgagggcgtctggttcgtggaggcc 358 |||||||||||||||||||||||||| |||| |||||| |||||| Sbjct: 48049 ctcgtggtggactgcaccggcgagggggtctcgttcgtcgaggcc 48005
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 65.9 bits (33), Expect = 1e-07 Identities = 42/45 (93%) Strand = Plus / Minus Query: 314 ctcgtggtggactgcaccggcgagggcgtctggttcgtggaggcc 358 |||||||||||||||||||||||||| |||| |||||| |||||| Sbjct: 25321490 ctcgtggtggactgcaccggcgagggggtctcgttcgtcgaggcc 25321446 Score = 48.1 bits (24), Expect = 0.024 Identities = 54/64 (84%) Strand = Plus / Minus Query: 325 ctgcaccggcgagggcgtctggttcgtggaggccacggcgagctgctcgctcgccgacgt 384 |||||||||||||||||| | ||||| | |||||||| |||||| | |||| |||||| Sbjct: 5117702 ctgcaccggcgagggcgtgggcttcgtcgccgccacggccagctgcgctctcgacgacgt 5117643 Query: 385 caag 388 |||| Sbjct: 5117642 caag 5117639 Score = 42.1 bits (21), Expect = 1.5 Identities = 42/49 (85%) Strand = Plus / Minus Query: 102 cggcggagcccaccccgggcggcgtgctaccgctctcctccatcgacaa 150 |||||| |||||||||||||||| || |||| |||||||||||||| Sbjct: 29800067 cggcggggcccaccccgggcggctccctctcgctatcctccatcgacaa 29800019
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 63.9 bits (32), Expect = 4e-07 Identities = 56/64 (87%) Strand = Plus / Plus Query: 314 ctcgtggtggactgcaccggcgagggcgtctggttcgtggaggccacggcgagctgctcg 373 ||||| || ||||| ||||||||||| || |||||| | |||||||||||||||||||| Sbjct: 23055499 ctcgtcgtcgactgtaccggcgagggtgtgtggttcatcgaggccacggcgagctgctcc 23055558 Query: 374 ctcg 377 |||| Sbjct: 23055559 ctcg 23055562 Score = 54.0 bits (27), Expect = 4e-04 Identities = 66/79 (83%) Strand = Plus / Minus Query: 330 ccggcgagggcgtctggttcgtggaggccacggcgagctgctcgctcgccgacgtcaagg 389 ||||||||||||||| |||||||||||| | || | |||| | |||||||||||||| Sbjct: 22997360 ccggcgagggcgtctacttcgtggaggccgccgccaactgcaccctcgccgacgtcaacc 22997301 Query: 390 gcctcgagcgcccgctgct 408 ||| ||||| |||||||| Sbjct: 22997300 acctggagcggccgctgct 22997282 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 323 gactgcaccggcgagggcgt 342 |||||||||||||||||||| Sbjct: 4313638 gactgcaccggcgagggcgt 4313619
>dbj|AP004571.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0652A05 Length = 150455 Score = 63.9 bits (32), Expect = 4e-07 Identities = 56/64 (87%) Strand = Plus / Plus Query: 314 ctcgtggtggactgcaccggcgagggcgtctggttcgtggaggccacggcgagctgctcg 373 ||||| || ||||| ||||||||||| || |||||| | |||||||||||||||||||| Sbjct: 122043 ctcgtcgtcgactgtaccggcgagggtgtgtggttcatcgaggccacggcgagctgctcc 122102 Query: 374 ctcg 377 |||| Sbjct: 122103 ctcg 122106 Score = 54.0 bits (27), Expect = 4e-04 Identities = 66/79 (83%) Strand = Plus / Minus Query: 330 ccggcgagggcgtctggttcgtggaggccacggcgagctgctcgctcgccgacgtcaagg 389 ||||||||||||||| |||||||||||| | || | |||| | |||||||||||||| Sbjct: 63904 ccggcgagggcgtctacttcgtggaggccgccgccaactgcaccctcgccgacgtcaacc 63845 Query: 390 gcctcgagcgcccgctgct 408 ||| ||||| |||||||| Sbjct: 63844 acctggagcggccgctgct 63826
>dbj|AP004236.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0417D05 Length = 165752 Score = 63.9 bits (32), Expect = 4e-07 Identities = 56/64 (87%) Strand = Plus / Plus Query: 314 ctcgtggtggactgcaccggcgagggcgtctggttcgtggaggccacggcgagctgctcg 373 ||||| || ||||| ||||||||||| || |||||| | |||||||||||||||||||| Sbjct: 6147 ctcgtcgtcgactgtaccggcgagggtgtgtggttcatcgaggccacggcgagctgctcc 6206 Query: 374 ctcg 377 |||| Sbjct: 6207 ctcg 6210
>dbj|AK120657.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013158E04, full insert sequence Length = 1507 Score = 63.9 bits (32), Expect = 4e-07 Identities = 56/64 (87%) Strand = Plus / Plus Query: 314 ctcgtggtggactgcaccggcgagggcgtctggttcgtggaggccacggcgagctgctcg 373 ||||| || ||||| ||||||||||| || |||||| | |||||||||||||||||||| Sbjct: 353 ctcgtcgtcgactgtaccggcgagggtgtgtggttcatcgaggccacggcgagctgctcc 412 Query: 374 ctcg 377 |||| Sbjct: 413 ctcg 416
>ref|NM_183607.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 453 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Plus Query: 320 gtggactgcaccggcgagggcgtctggttcgtggaggcc 358 ||||| |||||||||||||||| |||||||||||||||| Sbjct: 286 gtggagtgcaccggcgagggcgcctggttcgtggaggcc 324
>dbj|AP002482.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0706B05 Length = 187835 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 320 gtggactgcaccggcgagggcgtctggttcgtggaggcc 358 ||||| |||||||||||||||| |||||||||||||||| Sbjct: 57633 gtggagtgcaccggcgagggcgcctggttcgtggaggcc 57595
>dbj|AK070443.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023054D03, full insert sequence Length = 1655 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Plus Query: 320 gtggactgcaccggcgagggcgtctggttcgtggaggcc 358 ||||| |||||||||||||||| |||||||||||||||| Sbjct: 393 gtggagtgcaccggcgagggcgcctggttcgtggaggcc 431
>dbj|AK060689.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-A09, full insert sequence Length = 1553 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Plus Query: 320 gtggactgcaccggcgagggcgtctggttcgtggaggcc 358 ||||| |||||||||||||||| |||||||||||||||| Sbjct: 288 gtggagtgcaccggcgagggcgcctggttcgtggaggcc 326
>gb|AC104712.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1333_C12, complete sequence Length = 102029 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 314 ctcgtggtggactgcaccggcgagggcgtctggttcgtggaggcc 358 ||||||||||| |||||||||||||||||| |||||| |||||| Sbjct: 70459 ctcgtggtggagtgcaccggcgagggcgtcgtgttcgtcgaggcc 70503
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 314 ctcgtggtggactgcaccggcgagggcgtctggttcgtggaggcc 358 ||||||||||| |||||||||||||||||| |||||| |||||| Sbjct: 14439751 ctcgtggtggagtgcaccggcgagggcgtcgtgttcgtcgaggcc 14439795 Score = 48.1 bits (24), Expect = 0.024 Identities = 30/32 (93%) Strand = Plus / Minus Query: 326 tgcaccggcgagggcgtctggttcgtggaggc 357 |||||||||||||||| |||||||||||||| Sbjct: 11514255 tgcaccggcgagggcgcgtggttcgtggaggc 11514224 Score = 46.1 bits (23), Expect = 0.096 Identities = 35/39 (89%) Strand = Plus / Plus Query: 326 tgcaccggcgagggcgtctggttcgtggaggccacggcg 364 |||||||||||||| | |||||||||||||| |||||| Sbjct: 2083869 tgcaccggcgagggggcgtggttcgtggaggcgacggcg 2083907 Score = 44.1 bits (22), Expect = 0.38 Identities = 37/42 (88%) Strand = Plus / Plus Query: 317 gtggtggactgcaccggcgagggcgtctggttcgtggaggcc 358 |||||||| ||||||||||| |||||| |||||| |||||| Sbjct: 12488284 gtggtggagtgcaccggcgaaggcgtcgtgttcgtcgaggcc 12488325 Score = 40.1 bits (20), Expect = 5.9 Identities = 44/52 (84%) Strand = Plus / Minus Query: 145 cgacaagaccgccgccgtccgcgtctcggtcgacttcatccaggtcttcccc 196 |||||||| || ||||||| || ||| || |||||||||||||| |||||| Sbjct: 28266034 cgacaagatcgtcgccgtctgcatcttcgttgacttcatccaggtattcccc 28265983 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 323 gactgcaccggcgagggcgt 342 |||||||||||||||||||| Sbjct: 2315745 gactgcaccggcgagggcgt 2315726
>ref|XM_474639.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1296 Score = 48.1 bits (24), Expect = 0.024 Identities = 54/64 (84%) Strand = Plus / Plus Query: 325 ctgcaccggcgagggcgtctggttcgtggaggccacggcgagctgctcgctcgccgacgt 384 |||||||||||||||||| | ||||| | |||||||| |||||| | |||| |||||| Sbjct: 267 ctgcaccggcgagggcgtgggcttcgtcgccgccacggccagctgcgctctcgacgacgt 326 Query: 385 caag 388 |||| Sbjct: 327 caag 330
>gb|AY389673.1| Hyacinthus orientalis serine/threonine kinase mRNA, complete cds Length = 702 Score = 48.1 bits (24), Expect = 0.024 Identities = 27/28 (96%) Strand = Plus / Plus Query: 214 cggcgacgaccaggtggccacgatgcgc 241 ||||||||||||||||||| |||||||| Sbjct: 16 cggcgacgaccaggtggcctcgatgcgc 43
>gb|AC136229.3| Oryza sativa (japonica cultivar-group) chromosome 5 PAC clone P0690B12, complete sequence Length = 135323 Score = 48.1 bits (24), Expect = 0.024 Identities = 30/32 (93%) Strand = Plus / Minus Query: 326 tgcaccggcgagggcgtctggttcgtggaggc 357 |||||||||||||||| |||||||||||||| Sbjct: 83749 tgcaccggcgagggcgcgtggttcgtggaggc 83718
>emb|AL731589.3|OSJN00239 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039G19, complete sequence Length = 144144 Score = 48.1 bits (24), Expect = 0.024 Identities = 54/64 (84%) Strand = Plus / Minus Query: 325 ctgcaccggcgagggcgtctggttcgtggaggccacggcgagctgctcgctcgccgacgt 384 |||||||||||||||||| | ||||| | |||||||| |||||| | |||| |||||| Sbjct: 93975 ctgcaccggcgagggcgtgggcttcgtcgccgccacggccagctgcgctctcgacgacgt 93916 Query: 385 caag 388 |||| Sbjct: 93915 caag 93912
>dbj|AK067851.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013123P12, full insert sequence Length = 1553 Score = 48.1 bits (24), Expect = 0.024 Identities = 30/32 (93%) Strand = Plus / Plus Query: 326 tgcaccggcgagggcgtctggttcgtggaggc 357 |||||||||||||||| |||||||||||||| Sbjct: 407 tgcaccggcgagggcgcgtggttcgtggaggc 438
>ref|XM_475572.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1311 Score = 46.1 bits (23), Expect = 0.096 Identities = 35/39 (89%) Strand = Plus / Plus Query: 326 tgcaccggcgagggcgtctggttcgtggaggccacggcg 364 |||||||||||||| | |||||||||||||| |||||| Sbjct: 274 tgcaccggcgagggggcgtggttcgtggaggcgacggcg 312
>dbj|AK110033.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-160-A12, full insert sequence Length = 3789 Score = 46.1 bits (23), Expect = 0.096 Identities = 26/27 (96%) Strand = Plus / Minus Query: 141 ccatcgacaagaccgccgccgtccgcg 167 ||||||||| ||||||||||||||||| Sbjct: 3205 ccatcgacatgaccgccgccgtccgcg 3179
>dbj|AK106972.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-119-G06, full insert sequence Length = 867 Score = 46.1 bits (23), Expect = 0.096 Identities = 35/39 (89%) Strand = Plus / Minus Query: 326 tgcaccggcgagggcgtctggttcgtggaggccacggcg 364 |||||||||||||| | |||||||||||||| |||||| Sbjct: 394 tgcaccggcgagggggcgtggttcgtggaggcgacggcg 356
>dbj|AK069868.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023039O14, full insert sequence Length = 1730 Score = 46.1 bits (23), Expect = 0.096 Identities = 35/39 (89%) Strand = Plus / Plus Query: 326 tgcaccggcgagggcgtctggttcgtggaggccacggcg 364 |||||||||||||| | |||||||||||||| |||||| Sbjct: 374 tgcaccggcgagggggcgtggttcgtggaggcgacggcg 412
>gb|AC093490.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1127_B08, complete sequence Length = 112268 Score = 46.1 bits (23), Expect = 0.096 Identities = 35/39 (89%) Strand = Plus / Plus Query: 326 tgcaccggcgagggcgtctggttcgtggaggccacggcg 364 |||||||||||||| | |||||||||||||| |||||| Sbjct: 50710 tgcaccggcgagggggcgtggttcgtggaggcgacggcg 50748
>ref|XM_475094.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1395 Score = 44.1 bits (22), Expect = 0.38 Identities = 37/42 (88%) Strand = Plus / Plus Query: 317 gtggtggactgcaccggcgagggcgtctggttcgtggaggcc 358 |||||||| ||||||||||| |||||| |||||| |||||| Sbjct: 280 gtggtggagtgcaccggcgaaggcgtcgtgttcgtcgaggcc 321
>ref|XM_463664.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1329 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 320 gtggactgcaccggcgagggcg 341 |||||||||||||||||||||| Sbjct: 304 gtggactgcaccggcgagggcg 325
>gb|AC135428.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0628H02, complete sequence Length = 65115 Score = 44.1 bits (22), Expect = 0.38 Identities = 37/42 (88%) Strand = Plus / Plus Query: 317 gtggtggactgcaccggcgagggcgtctggttcgtggaggcc 358 |||||||| ||||||||||| |||||| |||||| |||||| Sbjct: 21822 gtggtggagtgcaccggcgaaggcgtcgtgttcgtcgaggcc 21863
>dbj|AP004223.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1033B05 Length = 138882 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 320 gtggactgcaccggcgagggcg 341 |||||||||||||||||||||| Sbjct: 63345 gtggactgcaccggcgagggcg 63366
>emb|BX664619.13| Mouse DNA sequence from clone RP23-349B9 on chromosome 11, complete sequence Length = 154608 Score = 44.1 bits (22), Expect = 0.38 Identities = 25/26 (96%) Strand = Plus / Plus Query: 31 ttccccccaccaatccactgagacca 56 ||||||||||||||| |||||||||| Sbjct: 133737 ttccccccaccaatctactgagacca 133762
>gb|AC007993.15|AC007993 Homo sapiens chromosome 17, clone RP11-527L4, complete sequence Length = 141704 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 39 accaatccactgagaccatggc 60 |||||||||||||||||||||| Sbjct: 85495 accaatccactgagaccatggc 85516
>ref|NM_186830.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1739 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 314 ctcgtggtggactgcaccggcgagggcgt 342 ||||| || |||||||||||||||||||| Sbjct: 326 ctcgtcgtcgactgcaccggcgagggcgt 354
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 387 agggcctcgagcgcccgctgc 407 ||||||||||||||||||||| Sbjct: 462325 agggcctcgagcgcccgctgc 462305
>dbj|AP003754.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1341_A08 Length = 128955 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 314 ctcgtggtggactgcaccggcgagggcgt 342 ||||| || |||||||||||||||||||| Sbjct: 104601 ctcgtcgtcgactgcaccggcgagggcgt 104573
>dbj|AP003738.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1058_C08 Length = 117923 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 314 ctcgtggtggactgcaccggcgagggcgt 342 ||||| || |||||||||||||||||||| Sbjct: 176 ctcgtcgtcgactgcaccggcgagggcgt 148
>dbj|AK109746.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-146-F02, full insert sequence Length = 1739 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 314 ctcgtggtggactgcaccggcgagggcgt 342 ||||| || |||||||||||||||||||| Sbjct: 326 ctcgtcgtcgactgcaccggcgagggcgt 354
>emb|AL662981.3|OSJN00182 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0086O06, complete sequence Length = 178552 Score = 42.1 bits (21), Expect = 1.5 Identities = 42/49 (85%) Strand = Plus / Minus Query: 102 cggcggagcccaccccgggcggcgtgctaccgctctcctccatcgacaa 150 |||||| |||||||||||||||| || |||| |||||||||||||| Sbjct: 80993 cggcggggcccaccccgggcggctccctctcgctatcctccatcgacaa 80945
>ref|XM_475582.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1335 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 323 gactgcaccggcgagggcgt 342 |||||||||||||||||||| Sbjct: 277 gactgcaccggcgagggcgt 296
>ref|NM_197227.1| Oryza sativa (japonica cultivar-group) putative hypersensitivity-related (hsr)protein (OSJNBb0073N24.11), mRNA Length = 1662 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 323 gactgcaccggcgagggcgt 342 |||||||||||||||||||| Sbjct: 289 gactgcaccggcgagggcgt 308
>gb|AC104284.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1735_C10, complete sequence Length = 187034 Score = 40.1 bits (20), Expect = 5.9 Identities = 44/52 (84%) Strand = Plus / Minus Query: 145 cgacaagaccgccgccgtccgcgtctcggtcgacttcatccaggtcttcccc 196 |||||||| || ||||||| || ||| || |||||||||||||| |||||| Sbjct: 50276 cgacaagatcgtcgccgtctgcatcttcgttgacttcatccaggtattcccc 50225
>gb|AC163741.3| Pan troglodytes BAC clone CH251-406E22 from chromosome unknown, complete sequence Length = 169655 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 41 caatccactgagaccatggc 60 |||||||||||||||||||| Sbjct: 93974 caatccactgagaccatggc 93993
>emb|X66505.1|SLPHLA S.liquefaciens phlA gene for phospholipase A1 and orfX Length = 1140 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 154 cgccgccgtccgcgtctcgg 173 |||||||||||||||||||| Sbjct: 873 cgccgccgtccgcgtctcgg 854
>emb|AL591583.14| Human DNA sequence from clone RP13-163C4 on chromosome X Contains the 5' end of the BIRC4 gene for baculoviral IAP repeat-containing 4 and a CpG island, complete sequence Length = 70693 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 41 caatccactgagaccatggc 60 |||||||||||||||||||| Sbjct: 56528 caatccactgagaccatggc 56509
>emb|AL451165.19| Human DNA sequence from clone RP11-140K17 on chromosome 6 Contain the 5' end of gene FLJ32402, an H+ transporting lysosomal ATPase (vacuolar proton pump) 14kD (ATP6S14) pseudogene and a CpG island, complete sequence Length = 38833 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 41 caatccactgagaccatggc 60 |||||||||||||||||||| Sbjct: 36003 caatccactgagaccatggc 36022
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 80 tcgccgccggcgctcgtcccaccg 103 ||||||||||||| |||||||||| Sbjct: 3985043 tcgccgccggcgcccgtcccaccg 3985066
>gb|AC078840.6| Oryza sativa chromosome 10 BAC OSJNBb0073N24 genomic sequence, complete sequence Length = 130058 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 323 gactgcaccggcgagggcgt 342 |||||||||||||||||||| Sbjct: 58469 gactgcaccggcgagggcgt 58488
>gb|AC093244.2| Homo sapiens chromosome 5 clone RP11-113I22, complete sequence Length = 85927 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 41 caatccactgagaccatggc 60 |||||||||||||||||||| Sbjct: 74081 caatccactgagaccatggc 74100
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 323 gactgcaccggcgagggcgt 342 |||||||||||||||||||| Sbjct: 18697191 gactgcaccggcgagggcgt 18697210
>gb|AC009156.10| Homo sapiens chromosome 16 clone RP11-5G20, complete sequence Length = 184884 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 41 caatccactgagaccatggc 60 |||||||||||||||||||| Sbjct: 13552 caatccactgagaccatggc 13571
>gb|AC009080.8| Homo sapiens chromosome 16 clone RP11-341K23, complete sequence Length = 178099 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 41 caatccactgagaccatggc 60 |||||||||||||||||||| Sbjct: 107603 caatccactgagaccatggc 107622
>gb|AC078975.6| Homo sapiens BAC clone RP11-107P22 from 2, complete sequence Length = 12794 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 41 caatccactgagaccatggc 60 |||||||||||||||||||| Sbjct: 1256 caatccactgagaccatggc 1275
>gb|AC009228.4| Homo sapiens BAC clone RP11-219F1 from 2, complete sequence Length = 173552 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 41 caatccactgagaccatggc 60 |||||||||||||||||||| Sbjct: 172808 caatccactgagaccatggc 172827
>gb|AE004443.1| Pseudomonas aeruginosa PAO1, section 4 of 529 of the complete genome Length = 19372 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 66 ccaccgtcgtcaagtcgccgccggcgct 93 |||||| ||||||||||| ||||||||| Sbjct: 15200 ccaccgccgtcaagtcgcggccggcgct 15173
>gb|AC008555.5|AC008555 Homo sapiens chromosome 19 clone CTC-523E23, complete sequence Length = 199157 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 41 caatccactgagaccatggc 60 |||||||||||||||||||| Sbjct: 127348 caatccactgagaccatggc 127329
>dbj|AP005919.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0554A06 Length = 165311 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 323 gactgcaccggcgagggcgt 342 |||||||||||||||||||| Sbjct: 158859 gactgcaccggcgagggcgt 158840
>dbj|AP003489.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0568D10 Length = 63101 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 323 gactgcaccggcgagggcgt 342 |||||||||||||||||||| Sbjct: 5218 gactgcaccggcgagggcgt 5199
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 323 gactgcaccggcgagggcgt 342 |||||||||||||||||||| Sbjct: 18708044 gactgcaccggcgagggcgt 18708063
>gb|AC105262.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1489_G03, complete sequence Length = 107870 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 323 gactgcaccggcgagggcgt 342 |||||||||||||||||||| Sbjct: 43660 gactgcaccggcgagggcgt 43641
>gb|M23640.1|SMAEXPH Serratia liquefaciens extracellular phospholipase A1 mRNA, complete cds Length = 2397 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 154 cgccgccgtccgcgtctcgg 173 |||||||||||||||||||| Sbjct: 595 cgccgccgtccgcgtctcgg 576 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,582,163 Number of Sequences: 3902068 Number of extensions: 2582163 Number of successful extensions: 50458 Number of sequences better than 10.0: 72 Number of HSP's better than 10.0 without gapping: 77 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 49497 Number of HSP's gapped (non-prelim): 963 length of query: 441 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 419 effective length of database: 17,147,199,772 effective search space: 7184676704468 effective search space used: 7184676704468 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
