>GATA1_CHICK (P17678) Erythroid transcription factor (GATA-binding factor 1)|
           (GATA-1) (Eryf1) (NF-E1 DNA-binding protein) (NF-E1A)
          Length = 304

 Score = 31.6 bits (70), Expect = 1.0
 Identities = 27/103 (26%), Positives = 35/103 (33%), Gaps = 3/103 (2%)
 Frame = +1

Query: 43  PTHPGSSAAMNCGRGPAPATMVRCRQCSASIT---APPGARVVQCMQCCCMTRVSGVGRQ 213
           P HP S   +    GP P     C  C A+ T      G     C  C    R++G  R 
Sbjct: 87  PPHPSSGPLLPLSSGPPPCEARECVNCGATATPLWRRDGTGHYLCNACGLYHRLNGQNRP 146

Query: 214 LSVVRPIPNFGGGRGKKRAVLVGIKYTKTRACELRGPINDVKC 342
           L  +RP         K+   +     T T     R P+ D  C
Sbjct: 147 L--IRPKKRL--LVSKRAGTVCSNCQTSTTTLWRRSPMGDPVC 185

>SYV_XYLFA (Q9PH12) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)|
           (ValRS)
          Length = 994

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 17/51 (33%), Positives = 28/51 (54%)
 Frame = -1

Query: 332 SLMGPLSSQARVLVYLIPTSTARFLPRPPPKLGMGRTTLSCRPTPETRVMQ 180
           +L+  L +  R+L  LIP  T     +  P+LG+  TTL  RP P+ + ++
Sbjct: 782 TLLYVLETLLRLLHPLIPFITEELWRQVAPRLGIQATTLMLRPYPQPQQLE 832

>NU170_YEAST (P38181) Nucleoporin NUP170 (Nuclear pore protein NUP170)|
          Length = 1502

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = -1

Query: 368 KRSVRMYLMHLTSLMGPLSSQARVLVYLIPTSTARFLPRPPPK 240
           K ++R Y++   SL GP+S +   +  +I T+TAR  P   PK
Sbjct: 374 KSTIRAYVITEKSLEGPMSIEPAYISRIIGTTTARAAPILGPK 416

>SYV_XYLFT (Q87F36) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)|
           (ValRS)
          Length = 994

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 17/51 (33%), Positives = 28/51 (54%)
 Frame = -1

Query: 332 SLMGPLSSQARVLVYLIPTSTARFLPRPPPKLGMGRTTLSCRPTPETRVMQ 180
           +L+  L +  R+L  LIP  T     +  P+LG+  TTL  RP P+ + ++
Sbjct: 782 TLLYVLETLLRLLHPLIPFITEELWCQVAPRLGIQATTLMLRPYPQPQQLE 832

>KV3I_MOUSE (P01661) Ig kappa chain V-III region MOPC 63 precursor|
          Length = 131

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
 Frame = -1

Query: 299 VLVYLIPTSTARF-LPRPPPKLGMG---RTTLSCRPTPETRVMQQHCMHWTTRAPGGAVM 132
           VL+  +P ST    L + P  L +    R T+SCR +          MHW  + PG    
Sbjct: 10  VLLLWVPGSTGNIVLTQSPASLAVSLGQRATISCRASESVDSYGNSFMHWYQQKPGQPPK 69

Query: 131 LALH 120
           L ++
Sbjct: 70  LLIY 73

>PCLO_CHICK (Q9PU36) Protein piccolo (Aczonin) (Fragment)|
          Length = 5120

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -1

Query: 314  SSQARVLVYLIPTSTARFLPRPPPKLGMGRTTLSCRPTP 198
            SS++  +   +  +TA  + RP P +G+G  T++  P P
Sbjct: 2578 SSKSEAVTTEVAKTTASVVKRPVPSVGLGSVTITIPPEP 2616

>MSC1_SCHPO (Q9UT79) Multicopy suppressor of chk1 protein 1|
          Length = 1588

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -1

Query: 257  PRPPPKLGMGRTTLSCRPTPETR-VMQQHCMHWTTRAPGGAVMLA 126
            P+PPP +G  R+    RPT   R +M+Q      T A G A + A
Sbjct: 1320 PQPPPFIGESRSNRKPRPTKRQREIMEQVESGKLTSAEGAAAIAA 1364

>VP40_EBV (P03234) Capsid protein P40 (Virion structural protein BVRF2)|
           (EC-RF3 and EC-RF3A) [Contains: Capsid protein VP24
           (Assemblin) (Protease) (EC 3.4.21.97); Capsid protein
           VP22A; C-terminal peptide]
          Length = 605

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -1

Query: 266 RFLPRPPPKLGMGRTTLSCRPTPETRVMQQHCMHWTTRAPGGA 138
           R++P PPP     +   +  P P T+  + HC+  +T    GA
Sbjct: 497 RYVPHPPPPPTSHQAAQAQPPPPGTQAPEAHCVAESTIPEAGA 539

>VMSA_WHV59 (P12910) Major surface antigen precursor|
          Length = 431

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
 Frame = +1

Query: 76  CGRGPAPATMVRCRQCSASIT---APPGARVVQCMQCCCMTRVSG 201
           C   P   T V CRQC+ S+     PP         CCC+   +G
Sbjct: 314 CPLQPTTETTVNCRQCTLSVQDTYTPP--------YCCCLKPTAG 350

>VMSA_WHVW6 (P11293) Major surface antigen precursor|
          Length = 282

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
 Frame = +1

Query: 76  CGRGPAPATMVRCRQCSASIT---APPGARVVQCMQCCCMTRVSG 201
           C   P   T V CRQC+ S+     PP         CCC+   +G
Sbjct: 165 CPLQPTTETTVNCRQCTLSVQDTYTPP--------YCCCLKPTAG 201

>LYAM2_RAT (P98105) E-selectin precursor (Endothelial leukocyte adhesion|
           molecule 1) (ELAM-1) (Leukocyte-endothelial cell
           adhesion molecule 2) (LECAM2) (CD62E antigen)
          Length = 549

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 9/56 (16%)
 Frame = +1

Query: 28  HQANEPTHP------GSSAAMNCGRGPAPATM---VRCRQCSASITAPPGARVVQC 168
           H +   THP       SS + +C RG  P++M   VRC          P   VV+C
Sbjct: 188 HGSLNCTHPFGLFSYNSSCSFSCERGYVPSSMETTVRCTSSGEWSAPAPACHVVEC 243

>CLAT_HUMAN (P28329) Choline O-acetyltransferase (EC 2.3.1.6) (CHOACTase)|
           (Choline acetylase) (ChAT)
          Length = 748

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 15/34 (44%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
 Frame = +2

Query: 47  PTQVARQP*TAAGVPLRPP-WCAAGSAALASPRR 145
           P    R P   A  P   P WC A SA  A PRR
Sbjct: 61  PRAATRPPPLPAHTPAHTPEWCGAASAEAAEPRR 94

>ACVS_NOCLA (P27743) N-(5-amino-5-carboxypentanoyl)-L-cysteinyl-D-valine synthase|
            (EC 6.3.2.26)
            (Delta-(L-alpha-aminoadipyl)-L-cysteinyl-D-valine
            synthetase) (ACV synthetase) (ACVS)
          Length = 3649

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 28/122 (22%), Positives = 42/122 (34%), Gaps = 15/122 (12%)
 Frame = -1

Query: 455  GHADVPLVGCLHGSLSSSVRMRTQSLAKPKRSVRMYLMHLTSLMGPLSSQARVLVYLIPT 276
            G  +  L GC      + V        + KR V  YL    + +      A +   L+P+
Sbjct: 2810 GEVEAALAGCSGVRQCAVVAGADPQAPERKRLVGYYLPEPGAAVDEADLFAALRAQLMPS 2869

Query: 275  STARFL---PRPPPKLGMGRTTLSCRPT------------PETRVMQQHCMHWTTRAPGG 141
                 L    RP P    G+  +   P+            P  RV  + C  W+ + PGG
Sbjct: 2870 MVPSLLVRLDRPLPMTITGKLDVDALPSADFSPKRAAYAAPRDRVEARLCHLWSAQLPGG 2929

Query: 140  AV 135
             V
Sbjct: 2930 TV 2931

>3BP1_HUMAN (Q9Y3L3) SH3 domain-binding protein 1 (3BP-1)|
          Length = 701

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +2

Query: 11  SKQRSPTKPTNPPTQVARQP*TAAGVPLRPPWCAAGSAALASPRR 145
           +K+ +P +PT PP QV+    +    PL PP   +     A PRR
Sbjct: 565 TKRPAPARPTMPPPQVSGSRSSPPAPPL-PPGSGSPGTPQALPRR 608

>HD2A_SOLCH (Q6V9I6) Histone deacetylase 2a (HD2a) (ScHD2a)|
          Length = 269

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +3

Query: 15  SSAHPPSQRTHPPR*LGSHELRQGSRS-GHHGALQAVQR*HHRAAR 149
           ++ HP  Q +  P+  GSH  +  +RS G  GAL +  +  H A +
Sbjct: 224 ATPHPSKQASKTPKSAGSHHCKPCNRSFGSEGALDSHSKAKHSAGK 269

>VMSA_WHV1 (P03143) Major surface antigen precursor|
          Length = 426

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
 Frame = +1

Query: 76  CGRGPAPATMVRCRQCSASIT---APPGARVVQCMQCCCMTRVSG 201
           C   P   T V CRQC+ S+     PP         CCC+   +G
Sbjct: 309 CPIQPTTETTVNCRQCTISVQDMYTPP--------YCCCLKPTAG 345

>POLR_TYMVC (P28477) RNA replicase polyprotein (EC 2.7.7.48)|
          Length = 1844

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 4/83 (4%)
 Frame = -1

Query: 410 SSSVRMRTQSLAKPKRSVRMYLMHLTSLMGPLSSQARVLVYLIPTSTARFLPRPPPKL-- 237
           S S++     L+ P+ +  +     TS   P  S+A     L P   + F+PRPPP    
Sbjct: 555 SYSLQWERTPLSIPRTTAFLPFTPTTSTAPPDRSEAS----LPPAFASTFVPRPPPAASS 610

Query: 236 --GMGRTTLSCRPTPETRVMQQH 174
                 TT +  PTP     + H
Sbjct: 611 PGAQPPTTTAAPPTPIEPTQRAH 633

>POLR_TYMV (P10358) RNA replicase polyprotein (EC 2.7.7.48)|
          Length = 1844

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 4/83 (4%)
 Frame = -1

Query: 410 SSSVRMRTQSLAKPKRSVRMYLMHLTSLMGPLSSQARVLVYLIPTSTARFLPRPPPKL-- 237
           S S++     L+ P+ +  +     TS   P  S+A     L P   + F+PRPPP    
Sbjct: 555 SYSLQWERTPLSIPRTTAFLPFTPTTSTAPPDRSEAS----LPPAFASTFVPRPPPAASS 610

Query: 236 --GMGRTTLSCRPTPETRVMQQH 174
                 TT +  PTP     + H
Sbjct: 611 PGAQPPTTTAAPPTPIEPTQRTH 633

>YWIS_WHEAT (P14723) Hypothetical 16 kDa protein in middle repetitive insertion|
           sequence WIS1
          Length = 151

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 88  PAPATMVRCRQCSASITAPPGARVVQCMQCC 180
           PAP+  +R   C+ S  A P      C++CC
Sbjct: 30  PAPSPQLRSLSCTTSAAATPVPVPHHCLRCC 60


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,032,330
Number of Sequences: 219361
Number of extensions: 1373086
Number of successful extensions: 5171
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 4675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5162
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3014947676
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)