>ref|XM_470787.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1481

 Score =  157 bits (79), Expect = 4e-35
 Identities = 103/111 (92%)
 Strand = Plus / Plus

                                                                       
Query: 316 aggggccccatcaacgacgtcaagtgcatgaggtacatcctcaccgagcgcttcggcttc 375
           ||||||||| |||||||||||||||||||| ||||| |||||  ||||||||||||||||
Sbjct: 377 aggggccccgtcaacgacgtcaagtgcatgcggtacctcctctgcgagcgcttcggcttc 436

                                                              
Query: 376 gccaacgactgcgtcctcatcctcaccgatgaggagagggacccgtgcagg 426
            |||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct: 437 cccaacgactgcgtcctcatcctcaccgacgaggagaaggacccgtgcagg 487



 Score = 48.1 bits (24), Expect = 0.026
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                   
Query: 252 ccgcggcaagaagcgcgccgtgctggtcgggatcaagtac 291
           ||||||||||||||||||||| ||| |||| |||| ||||
Sbjct: 304 ccgcggcaagaagcgcgccgtcctgatcggcatcacgtac 343

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  129 bits (65), Expect = 9e-27
 Identities = 86/93 (92%)
 Strand = Plus / Minus

                                                                            
Query: 316      aggggccccatcaacgacgtcaagtgcatgaggtacatcctcaccgagcgcttcggcttc 375
                ||||||||| |||||||||||||||||||| ||||| |||||  ||||||||||||||||
Sbjct: 15370252 aggggccccgtcaacgacgtcaagtgcatgcggtacctcctctgcgagcgcttcggcttc 15370193

                                                 
Query: 376      gccaacgactgcgtcctcatcctcaccgatgag 408
                 ||||||||||||||||||||||||||| ||||
Sbjct: 15370192 cccaacgactgcgtcctcatcctcaccggtgag 15370160



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 76/93 (81%)
 Strand = Plus / Minus

                                                                            
Query: 309      cgagctcaggggccccatcaacgacgtcaagtgcatgaggtacatcctcaccgagcgctt 368
                |||||||| |||| || ||||||||||||| ||||||   | | |||||  |||||||||
Sbjct: 15424794 cgagctcaagggcaccgtcaacgacgtcaactgcatgtccttcctcctccgcgagcgctt 15424735

                                                 
Query: 369      cggcttcgccaacgactgcgtcctcatcctcac 401
                || |||| ||  ||||||| ||||| |||||||
Sbjct: 15424734 cgccttccccgccgactgcatcctcgtcctcac 15424702



 Score = 48.1 bits (24), Expect = 0.026
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                        
Query: 252      ccgcggcaagaagcgcgccgtgctggtcgggatcaagtac 291
                ||||||||||||||||||||| ||| |||| |||| ||||
Sbjct: 15370325 ccgcggcaagaagcgcgccgtcctgatcggcatcacgtac 15370286

>gb|AC092075.7| Oryza sativa chromosome 3 BAC OSJNBa0017N12 genomic sequence, complete
              sequence
          Length = 164705

 Score =  129 bits (65), Expect = 9e-27
 Identities = 86/93 (92%)
 Strand = Plus / Plus

                                                                          
Query: 316    aggggccccatcaacgacgtcaagtgcatgaggtacatcctcaccgagcgcttcggcttc 375
              ||||||||| |||||||||||||||||||| ||||| |||||  ||||||||||||||||
Sbjct: 131274 aggggccccgtcaacgacgtcaagtgcatgcggtacctcctctgcgagcgcttcggcttc 131333

                                               
Query: 376    gccaacgactgcgtcctcatcctcaccgatgag 408
               ||||||||||||||||||||||||||| ||||
Sbjct: 131334 cccaacgactgcgtcctcatcctcaccggtgag 131366



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 76/93 (81%)
 Strand = Plus / Plus

                                                                         
Query: 309   cgagctcaggggccccatcaacgacgtcaagtgcatgaggtacatcctcaccgagcgctt 368
             |||||||| |||| || ||||||||||||| ||||||   | | |||||  |||||||||
Sbjct: 76732 cgagctcaagggcaccgtcaacgacgtcaactgcatgtccttcctcctccgcgagcgctt 76791

                                              
Query: 369   cggcttcgccaacgactgcgtcctcatcctcac 401
             || |||| ||  ||||||| ||||| |||||||
Sbjct: 76792 cgccttccccgccgactgcatcctcgtcctcac 76824



 Score = 48.1 bits (24), Expect = 0.026
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                      
Query: 252    ccgcggcaagaagcgcgccgtgctggtcgggatcaagtac 291
              ||||||||||||||||||||| ||| |||| |||| ||||
Sbjct: 131201 ccgcggcaagaagcgcgccgtcctgatcggcatcacgtac 131240

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  129 bits (65), Expect = 9e-27
 Identities = 86/93 (92%)
 Strand = Plus / Minus

                                                                            
Query: 316      aggggccccatcaacgacgtcaagtgcatgaggtacatcctcaccgagcgcttcggcttc 375
                ||||||||| |||||||||||||||||||| ||||| |||||  ||||||||||||||||
Sbjct: 15364786 aggggccccgtcaacgacgtcaagtgcatgcggtacctcctctgcgagcgcttcggcttc 15364727

                                                 
Query: 376      gccaacgactgcgtcctcatcctcaccgatgag 408
                 ||||||||||||||||||||||||||| ||||
Sbjct: 15364726 cccaacgactgcgtcctcatcctcaccggtgag 15364694



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 76/93 (81%)
 Strand = Plus / Minus

                                                                            
Query: 309      cgagctcaggggccccatcaacgacgtcaagtgcatgaggtacatcctcaccgagcgctt 368
                |||||||| |||| || ||||||||||||| ||||||   | | |||||  |||||||||
Sbjct: 15419328 cgagctcaagggcaccgtcaacgacgtcaactgcatgtccttcctcctccgcgagcgctt 15419269

                                                 
Query: 369      cggcttcgccaacgactgcgtcctcatcctcac 401
                || |||| ||  ||||||| ||||| |||||||
Sbjct: 15419268 cgccttccccgccgactgcatcctcgtcctcac 15419236



 Score = 48.1 bits (24), Expect = 0.026
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                        
Query: 252      ccgcggcaagaagcgcgccgtgctggtcgggatcaagtac 291
                ||||||||||||||||||||| ||| |||| |||| ||||
Sbjct: 15364859 ccgcggcaagaagcgcgccgtcctgatcggcatcacgtac 15364820

>ref|XM_470796.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1110

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 76/93 (81%)
 Strand = Plus / Plus

                                                                       
Query: 309 cgagctcaggggccccatcaacgacgtcaagtgcatgaggtacatcctcaccgagcgctt 368
           |||||||| |||| || ||||||||||||| ||||||   | | |||||  |||||||||
Sbjct: 309 cgagctcaagggcaccgtcaacgacgtcaactgcatgtccttcctcctccgcgagcgctt 368

                                            
Query: 369 cggcttcgccaacgactgcgtcctcatcctcac 401
           || |||| ||  ||||||| ||||| |||||||
Sbjct: 369 cgccttccccgccgactgcatcctcgtcctcac 401

>dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, complete genome
          Length = 5727534

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 382     gactgcgtcctcatcctcaccga 404
               |||||||||||||||||||||||
Sbjct: 3788597 gactgcgtcctcatcctcaccga 3788575

>ref|XM_792692.1| PREDICTED: Strongylocentrotus purpuratus similar to CG3456-PA
           (LOC593204), mRNA
          Length = 2322

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 350 acatcctcaccgagcgcttcgg 371
           ||||||||||||||||||||||
Sbjct: 110 acatcctcaccgagcgcttcgg 131

>gb|AC121275.20| Mus musculus chromosome 8, clone RP24-234C3, complete sequence
          Length = 158075

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 159    cgtccagtgcatgcagtgctg 179
              |||||||||||||||||||||
Sbjct: 137240 cgtccagtgcatgcagtgctg 137260

>ref|XM_753559.1| Ustilago maydis 521 hypothetical protein (UM02505.1) partial mRNA
          Length = 2676

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 250 ggccgcggcaagaagcgcgcc 270
           |||||||||||||||||||||
Sbjct: 10  ggccgcggcaagaagcgcgcc 30

>ref|XM_755941.1| Ustilago maydis 521 hypothetical protein (UM04887.1) partial mRNA
          Length = 2925

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 250 ggccgcggcaagaagcgcgcc 270
           |||||||||||||||||||||
Sbjct: 10  ggccgcggcaagaagcgcgcc 30

>ref|XM_756120.1| Ustilago maydis 521 hypothetical protein (UM05066.1) partial mRNA
          Length = 2874

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 250 ggccgcggcaagaagcgcgcc 270
           |||||||||||||||||||||
Sbjct: 10  ggccgcggcaagaagcgcgcc 30

>ref|XM_757199.1| Ustilago maydis 521 hypothetical protein (UM06145.1) partial mRNA
          Length = 2649

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 250 ggccgcggcaagaagcgcgcc 270
           |||||||||||||||||||||
Sbjct: 10  ggccgcggcaagaagcgcgcc 30

>ref|XM_757567.1| Ustilago maydis 521 hypothetical protein (UM06513.1) partial mRNA
          Length = 435

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 250 ggccgcggcaagaagcgcgcc 270
           |||||||||||||||||||||
Sbjct: 10  ggccgcggcaagaagcgcgcc 30

>gb|AC128768.4| Rattus norvegicus 1 BAC CH230-445L3 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 156228

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 41    aacccacccacccaggtagct 61
             |||||||||||||||||||||
Sbjct: 89312 aacccacccacccaggtagct 89292

>ref|XM_784811.1| PREDICTED: Strongylocentrotus purpuratus similar to myosin, heavy
            polypeptide 11, smooth muscle (LOC584967), partial mRNA
          Length = 2446

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 397  ctcaccgatgaggagagggac 417
            |||||||||||||||||||||
Sbjct: 1990 ctcaccgatgaggagagggac 2010

>gb|U23762.1|SPU23762 Streptomyces phaeochromogenes plasmid pJV1, complete sequence
          Length = 11143

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 234  ccccaacttcggcggcggccgcggc 258
            ||||||| |||||||||||||||||
Sbjct: 1999 ccccaacctcggcggcggccgcggc 2023

>gb|AY147173.1| Mycobacterium fortuitum strain ATCC 49403T RpoB (rpoB) gene,
           complete cds
          Length = 3906

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 356 tcaccgagcgcttcggcttc 375
           ||||||||||||||||||||
Sbjct: 909 tcaccgagcgcttcggcttc 928

>gb|AY147172.1| Mycobacterium fortuitum strain ATCC 49404T RpoB (rpoB) gene,
           complete cds
          Length = 3914

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 356 tcaccgagcgcttcggcttc 375
           ||||||||||||||||||||
Sbjct: 914 tcaccgagcgcttcggcttc 933

>gb|AY147166.1| Mycobacterium peregrinum strain CIP 105382T RpoB (rpoB) gene,
           complete cds
          Length = 4016

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 356 tcaccgagcgcttcggcttc 375
           ||||||||||||||||||||
Sbjct: 908 tcaccgagcgcttcggcttc 927

>gb|AY147165.1| Mycobacterium fortuitum strain CIP 104534T RpoB (rpoB) gene, complete
            cds
          Length = 4405

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 356  tcaccgagcgcttcggcttc 375
            ||||||||||||||||||||
Sbjct: 1195 tcaccgagcgcttcggcttc 1214

>ref|NM_001031253.1| Gallus gallus heterogeneous nuclear ribonucleoprotein A3 (HNRPA3),
           mRNA
          Length = 1547

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 238 aacttcggcggcggccgcgg 257
           ||||||||||||||||||||
Sbjct: 685 aacttcggcggcggccgcgg 704

>ref|XM_473412.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 744

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 243 cggcggcggccgcggcaagaagcg 266
           |||||||||| |||||||||||||
Sbjct: 135 cggcggcggcggcggcaagaagcg 158

>gb|AY492259.1| Corynebacterium imitans strain CIP 105130 RpoB (rpoB) gene, partial
           cds
          Length = 3333

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 356 tcaccgagcgcttcggcttc 375
           ||||||||||||||||||||
Sbjct: 685 tcaccgagcgcttcggcttc 704

>gb|AC148334.3| Mus musculus BAC clone RP23-213L20 from chromosome 13, complete sequence
          Length = 207106

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 63     ggcagccatgaactgcggcagggg 86
              ||||||||||||||| ||||||||
Sbjct: 192525 ggcagccatgaactgaggcagggg 192548

>gb|AY262742.1| Mycobacterium farcinogenes strain 3753 RpoB gene, complete cds
          Length = 3916

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 356 tcaccgagcgcttcggcttc 375
           ||||||||||||||||||||
Sbjct: 916 tcaccgagcgcttcggcttc 935

>gb|AY262738.1| Mycobacterium senegalense strain CIP 104941 RpoB gene, complete cds
          Length = 3898

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 356 tcaccgagcgcttcggcttc 375
           ||||||||||||||||||||
Sbjct: 916 tcaccgagcgcttcggcttc 935

>gb|AY262737.1| Mycobacterium porcinum strain CIP 105392 RpoB gene, complete cds
          Length = 3902

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 356 tcaccgagcgcttcggcttc 375
           ||||||||||||||||||||
Sbjct: 920 tcaccgagcgcttcggcttc 939

>emb|BX572601.1| Rhodopseudomonas palustris CGA009 complete genome; segment 9/16
          Length = 348580

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 357    caccgagcgcttcggcttcg 376
              ||||||||||||||||||||
Sbjct: 263007 caccgagcgcttcggcttcg 263026

>emb|AL663000.4|OSJN00201 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0034G17,
             complete sequence
          Length = 127259

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 243   cggcggcggccgcggcaagaagcg 266
             |||||||||| |||||||||||||
Sbjct: 20788 cggcggcggcggcggcaagaagcg 20811

>emb|AJ719821.1| Gallus gallus mRNA for hypothetical protein, clone 6o1
          Length = 1547

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 238 aacttcggcggcggccgcgg 257
           ||||||||||||||||||||
Sbjct: 685 aacttcggcggcggccgcgg 704

>emb|AL645639.17| Mouse DNA sequence from clone RP23-370G8 on chromosome 11 Contains a
             novel gene (LOC327917), the 5' end of the Adamts2 gene for
             a disintegrin-like and metalloprotease (reprolysin type)
             with thrombospondin type 1 motif 2, two novel genes
             (4930579K21) and a CpG island, complete sequence
          Length = 188520

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 244   ggcggcggccgcggcaagaagcgc 267
             ||||||||||||| ||||||||||
Sbjct: 55787 ggcggcggccgcgccaagaagcgc 55810

>gb|CP000133.1| Rhizobium etli CFN 42, complete genome
          Length = 4381608

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 240     cttcggcggcggccgcggca 259
               ||||||||||||||||||||
Sbjct: 2209240 cttcggcggcggccgcggca 2209259

>gb|AC160646.2| Gallus gallus BAC clone CH261-24P2 from chromosome unknown, complete
             sequence
          Length = 212960

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 161   tccagtgcatgcagtgctgc 180
             ||||||||||||||||||||
Sbjct: 13930 tccagtgcatgcagtgctgc 13911

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 243      cggcggcggccgcggcaagaagcg 266
                |||||||||| |||||||||||||
Sbjct: 27496812 cggcggcggcggcggcaagaagcg 27496835

>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome
          Length = 3147090

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 356    tcaccgagcgcttcggcttc 375
              ||||||||||||||||||||
Sbjct: 532306 tcaccgagcgcttcggcttc 532325

>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence
          Length = 2094509

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 359     ccgagcgcttcggcttcgcc 378
               ||||||||||||||||||||
Sbjct: 1761174 ccgagcgcttcggcttcgcc 1761155


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,224,447
Number of Sequences: 3902068
Number of extensions: 3224447
Number of successful extensions: 94453
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 94008
Number of HSP's gapped (non-prelim): 441
length of query: 467
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 445
effective length of database: 17,147,199,772
effective search space: 7630503898540
effective search space used: 7630503898540
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)