>SCND2_HUMAN (Q9GZW5) SCAN domain-containing protein 2|
          Length = 306

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 33/100 (33%), Positives = 44/100 (44%), Gaps = 10/100 (10%)
 Frame = +1

Query: 214 ESGRRGRCRGRH------TSSPSKGWE-EIRRGWTPAPRGATSRAP---EGMTARSRSMQ 363
           E+G    C GR        ++PS       R G + +     +RAP   EG   R+ + +
Sbjct: 166 ETGSTASCAGRWRTCCAAAAAPSAARSASARTGRSTSSCARAARAPSATEGALTRTPAPR 225

Query: 364 WLNRQARRPSSGDWQPGCTPG*RTA*ERPEGTMTGRQRDS 483
               Q RRP +G W+PG   G  TA   P GT   RQR S
Sbjct: 226 -RPLQRRRPGTGPWRPGRQRGAGTA---PPGTQP-RQRPS 260

>GDF1_MOUSE (P20863) Embryonic growth/differentiation factor 1 precursor|
           (GDF-1)
          Length = 357

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 26/85 (30%), Positives = 30/85 (35%), Gaps = 15/85 (17%)
 Frame = +1

Query: 214 ESGRRGRCRGR--HTSSPSKGWEEIRRGWTPAPRG-------------ATSRAPEGMTAR 348
           E G  G CR R  H S    GW      W  APRG              T R P G  A 
Sbjct: 244 EVGPVGTCRTRRLHVSFREVGWHR----WVIAPRGFLANFCQGTCALPETLRGPGGPPAL 299

Query: 349 SRSMQWLNRQARRPSSGDWQPGCTP 423
           + ++      A  P+ G   P C P
Sbjct: 300 NHAVLRALMHAAAPTPGAGSPCCVP 324

>YQ52_SCHPO (O74419) Hypothetical protein C162.02c in chromosome III|
          Length = 981

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 21/66 (31%), Positives = 31/66 (46%)
 Frame = +3

Query: 6   SIVYRRPAHTSSKRAQREVEEDTDARGEMGSRLDARTLKDEVASMDRRPLLDLGHPLLNR 185
           S++  +  +  S   Q+EVE D D +    S      L   VA +  R + DLGHPL+  
Sbjct: 761 SVMGPKALYFISGGGQQEVELDDDTQSAKAS---GYALSKYVAELLCRKISDLGHPLIYV 817

Query: 186 VADSFI 203
           +   FI
Sbjct: 818 IRPGFI 823

>AP180_RAT (Q05140) Clathrin coat assembly protein AP180 (Clathrin|
           coat-associated protein AP180) (91 kDa
           synaptosomal-associated protein)
          Length = 915

 Score = 30.0 bits (66), Expect = 3.6
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +1

Query: 334 GMTARSRSMQWLNRQARRPSSGDWQPGCTPG*RTA*ERPEGTM 462
           G T++   +QW   + +     +WQP  TP   +A   P+GT+
Sbjct: 784 GTTSKKGDLQWNAGEKKLTGGANWQPKVTPATWSAGVPPQGTV 826

>AP180_MOUSE (Q61548) Clathrin coat assembly protein AP180 (Clathrin|
           coat-associated protein AP180) (91 kDa
           synaptosomal-associated protein) (Phosphoprotein F1-20)
          Length = 901

 Score = 30.0 bits (66), Expect = 3.6
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +1

Query: 334 GMTARSRSMQWLNRQARRPSSGDWQPGCTPG*RTA*ERPEGTM 462
           G T++   +QW   + +     +WQP  TP   +A   P+GT+
Sbjct: 770 GTTSKKGDLQWNAGEKKLTGGANWQPKVTPATWSAGVPPQGTV 812

>GAG_FOAMV (P14349) Gag polyprotein (Core polyprotein) [Contains: Protease (EC|
           3.4.23.-)]
          Length = 811

 Score = 29.6 bits (65), Expect = 4.7
 Identities = 19/62 (30%), Positives = 32/62 (51%)
 Frame = +1

Query: 226 RGRCRGRHTSSPSKGWEEIRRGWTPAPRGATSRAPEGMTARSRSMQWLNRQARRPSSGDW 405
           RGR RG++TS PS+G     RG     R A+ ++  G + ++++   LN+         +
Sbjct: 488 RGRGRGQNTSRPSQGPANSGRG---RQRPASGQSNRGSSTQNQNQDNLNQGGYNLRPRTY 544

Query: 406 QP 411
           QP
Sbjct: 545 QP 546

>M3K1_MOUSE (P53349) Mitogen-activated protein kinase kinase kinase 1 (EC|
           2.7.11.25) (MAPK/ERK kinase kinase 1) (MEK kinase 1)
           (MEKK 1)
          Length = 1493

 Score = 29.3 bits (64), Expect = 6.2
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -2

Query: 335 PSGAREVAPLGAGVQPRRISSHPFDGDEVCLPRHRP 228
           PSG R V P   GV+ +R+S  PF    +  PR  P
Sbjct: 252 PSG-RSVKPESPGVRRKRVSPVPFQSGRITPPRRAP 286

>Y659_PASMU (Q9CMZ1) Hypothetical UPF0192 protein PM0659 precursor|
          Length = 1905

 Score = 28.9 bits (63), Expect = 8.1
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -3

Query: 433 YVIPEYTPAANPHWMASL 380
           Y++PE+TP  +PHW  +L
Sbjct: 301 YLLPEFTPENHPHWRYNL 318

>AREA_PENCH (Q01582) Nitrogen regulatory protein areA (Nitrogen regulator nre)|
          Length = 725

 Score = 28.9 bits (63), Expect = 8.1
 Identities = 13/31 (41%), Positives = 13/31 (41%)
 Frame = -2

Query: 497 PAIALLSRCLPVMVPSGLSQAVRYPGVHPGC 405
           P   L SRCLP   P GL       G  P C
Sbjct: 495 PESGLSSRCLPARQPGGLKNGSTNAGPEPAC 525


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,570,074
Number of Sequences: 219361
Number of extensions: 1089508
Number of successful extensions: 4219
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4218
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3581144924
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)