ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast52a09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|U43718.1|TAU43718 Triticum aestivum pMA1951 mRNA, partial cds 674 0.0
2gb|AY057933.1| Bromus inermis stress-inducible membrane pore pro... 511 e-142
3ref|NM_189221.1| Oryza sativa (japonica cultivar-group), predic... 323 3e-85
4gb|BT017732.1| Zea mays clone EL01N0448C02.c mRNA sequence 208 1e-50
5dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 188 1e-44
6dbj|AP003206.4| Oryza sativa (japonica cultivar-group) genomic D... 188 1e-44
7dbj|AP002871.2| Oryza sativa (japonica cultivar-group) genomic D... 188 1e-44
8gb|AY111174.1| Zea mays CL27726_1 mRNA sequence 84 5e-13
9gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 80 8e-12
10gb|AC135908.1| Genomic sequence for Oryza sativa, Nipponbare str... 80 8e-12
11dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 80 8e-12
12dbj|AK063714.1| Oryza sativa (japonica cultivar-group) cDNA clon... 80 8e-12
13ref|XM_569079.1| Cryptococcus neoformans var. neoformans JEC21 h... 44 0.43
14gb|AE017342.1| Cryptococcus neoformans var. neoformans JEC21 chr... 44 0.43
15gb|AC144384.4| Pan troglodytes BAC clone CH251-456K17 from X, co... 42 1.7
16gb|AC145689.4| Pan troglodytes BAC clone CH251-184I22 from X, co... 42 1.7
17ref|NG_002382.2| Homo sapiens melanoma antigen pseudogene, famil... 42 1.7
18gb|U82671.5| Homo sapiens chromosome X multiple clones map q28, ... 42 1.7
19gb|AF002997.4| Homo sapiens chromosome X multiple clones map q28... 42 1.7
20gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome 42 1.7
21emb|AJ011921.1|HVU011921 Hordeum vulgare mRNA for putative amino... 42 1.7
22gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete ... 40 6.8
23gb|AE007264.1| Sinorhizobium meliloti 1021 plasmid pSymA section... 40 6.8
24emb|AL021392.5|HS439F8 Human DNA sequence from clone RP3-439F8 o... 40 6.8
25gb|AC015933.9| Homo sapiens chromosome 18, clone CTD-2023G8, com... 40 6.8
26emb|AL645842.15| Mouse DNA sequence from clone RP23-20A9 on chro... 40 6.8
27dbj|D25413.1|TTHPROC Thermus thermophilus proC gene for pyrrolin... 40 6.8
28gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, comple... 40 6.8
29gb|AC157353.2| Mus musculus BAC clone RP24-236H23 from chromosom... 40 6.8
30dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.8
31dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 6.8
32ref|XM_230571.3| PREDICTED: Rattus norvegicus similar to Adapter... 40 6.8
33dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete g... 40 6.8
34dbj|AP005908.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.8
35gb|AE005007.1| Halobacterium sp. NRC-1 section 38 of 170 of the ... 40 6.8
36gb|AC155931.2| Mus musculus BAC clone RP23-289D4 from 9, complet... 40 6.8
37gb|AC166329.3| Pan troglodytes BAC clone CH251-143I6 from chromo... 40 6.8
38gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 6.8
39emb|CT030730.7| Mouse DNA sequence from clone RP24-252L17 on chr... 40 6.8
40gb|AE017221.1| Thermus thermophilus HB27, complete genome 40 6.8 
>gb|U43718.1|TAU43718 Triticum aestivum pMA1951 mRNA, partial cds
          Length = 777

 Score =  674 bits (340), Expect = 0.0
 Identities = 401/419 (95%), Gaps = 2/419 (0%)
 Strand = Plus / Minus

                                                                       
Query: 84  ggagagatgggcagcaggctcgacgcgcgcacgctcaaggacgaggtggcgagcatggac 143
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 727 ggagagatgggcagcaggcttgacgcgcgcacgctcaaggacgaggtggcgagcatggac 668

                                                                       
Query: 144 cggcgcccgctcctcgacctcggccacccgctcctcaaccgcgtcgccgacagcttcatc 203
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 667 cggcgcccgctcctcgacctcggccacccgctgctcaaccgcgtcgccgacagcttcatc 608

                                                                       
Query: 204 cgcgccgccggagtcggggcggcgagggcggtgtcgcgggaggcatacttcgtcaccgtc 263
           ||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||
Sbjct: 607 cgcgccgccggagtcggagcggcgagggctgtgtcgcgggaggcatacttcgtcnccgtc 548

                                                                       
Query: 264 gaagggatgggaggagattcgacggggctggacaccagcgccaagaggagcaacttctcg 323
           ||||||||||||||||| |||||||||||||||| || ||||||||||||| | ||||||
Sbjct: 547 gaagggatgggaggagactcgacggggctggacagcaccgccaagaggagccatttctcg 488

                                                                       
Query: 324 agcgccagaggggatgacggccagaagtcgctcgatgcagtggttaaatcggcaggcaag 383
           |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 487 agcgccagaggggatgacggccagaagtcgctcgattcagtggttaaatcggcaagcaag 428

                                                                       
Query: 384 gaggccatccagtggggattggcagccggggtgtactccgggataacgtacggcctgaga 443
           ||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||
Sbjct: 427 gaggccatccagtggggattggcagccggagtctactctgggataacgtacggcctgaga 368

                                                                      
Query: 444 gaggccagagggcaccatgactggaag-acagcgcgatagca-gggcgatcgccggagc 500
           ||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 367 gaggccagaggacaccatgactggaagaacagcgcgatagcaggggcgatcgccggagc 309
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>gb|AY057933.1| Bromus inermis stress-inducible membrane pore protein (BG15) mRNA,
           complete cds
          Length = 819

 Score =  511 bits (258), Expect = e-142
 Identities = 348/378 (92%)
 Strand = Plus / Plus

                                                                       
Query: 94  gcagcaggctcgacgcgcgcacgctcaaggacgaggtggcgagcatggaccggcgcccgc 153
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78  gcagcaggctcgacgcgcgcacgctcaaggacgaggtggcgagcatggaccggcgcccgc 137

                                                                       
Query: 154 tcctcgacctcggccacccgctcctcaaccgcgtcgccgacagcttcatccgcgccgccg 213
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 tcctcgacctcggccacccgctcctcaaccgcgtcgccgacagcttcatccgcgccgccg 197

                                                                       
Query: 214 gagtcggggcggcgagggcggtgtcgcgggaggcatacttcgtcaccgtcgaagggatgg 273
           | ||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 198 gtgtcggagcggcgagggctgtgtcgcgggaggcctacttcgtcaccgtcgaagggatgg 257

                                                                       
Query: 274 gaggagattcgacggggctggacaccagcgccaagaggagcaacttctcgagcgccagag 333
           ||||||| || || |||||||| | || ||||||||||||| | ||||||||||||||||
Sbjct: 258 gaggagactccacagggctggatagcaacgccaagaggagccatttctcgagcgccagag 317

                                                                       
Query: 334 gggatgacggccagaagtcgctcgatgcagtggttaaatcggcaggcaaggaggccatcc 393
           ||||||| |||||||||||| |||| | |||||| |||||||| |||||||||||| |||
Sbjct: 318 gggatgatggccagaagtcgttcgaagtagtggtcaaatcggccggcaaggaggccttcc 377

                                                                       
Query: 394 agtggggattggcagccggggtgtactccgggataacgtacggcctgagagaggccagag 453
           ||||||| || |||||||| |||||||||||  | || ||||| ||||| ||||||||||
Sbjct: 378 agtgggggttagcagccggagtgtactccggattgacctacggtctgagggaggccagag 437

                             
Query: 454 ggcaccatgactggaaga 471
           ||  ||||||||||||||
Sbjct: 438 ggtgccatgactggaaga 455
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>ref|NM_189221.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 792

 Score =  323 bits (163), Expect = 3e-85
 Identities = 309/358 (86%), Gaps = 6/358 (1%)
 Strand = Plus / Plus

                                                                       
Query: 114 acgctcaaggacgaggtggcgagcatggaccggcgcccgctcctcgacctcggccacccg 173
           ||||||||||| ||||||||||||||||||  |||   |||| |||||||||||||||||
Sbjct: 301 acgctcaaggaggaggtggcgagcatggacaagcggtggctcgtcgacctcggccacccg 360

                                                                       
Query: 174 ctcctcaaccgcgtcgccgacagcttcatccgcgccgccggagtcggggcggcgagggcg 233
           ||| ||||||||||||||||||||||||||||||||||||| |||||||| ||| |||| 
Sbjct: 361 ctcgtcaaccgcgtcgccgacagcttcatccgcgccgccggcgtcggggccgcgcgggcc 420

                                                                       
Query: 234 gtgtcgcgggaggcatacttcgtcaccgtcgaagggatgggaggagattcgacggggctg 293
           || ||||||||||| ||||| ||||||||||||||| | ||||| ||  || | ||||||
Sbjct: 421 gtctcgcgggaggcctactttgtcaccgtcgaagggcttggaggggacacggccgggctg 480

                                                                       
Query: 294 gacaccagcgccaagaggagcaacttctcgagcgccagaggggatgacggccagaagtcg 353
           |||| |  || |||||||||||| ||||||      ||||||||||| ||||||||||||
Sbjct: 481 gacaacgccgtcaagaggagcaatttctcg------agaggggatgatggccagaagtcg 534

                                                                       
Query: 354 ctcgatgcagtggttaaatcggcaggcaaggaggccatccagtggggattggcagccggg 413
           || ||||| ||||| ||||| || || ||||||||  |||||||||||||||| ||||||
Sbjct: 535 cttgatgccgtggtaaaatccgctgggaaggaggctttccagtggggattggcggccggg 594

                                                                     
Query: 414 gtgtactccgggataacgtacggcctgagagaggccagagggcaccatgactggaaga 471
           |||||||| ||  | |||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 595 gtgtactctggactgacgtacggcctgagagaggccagagggtgccatgactggaaga 652
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>gb|BT017732.1| Zea mays clone EL01N0448C02.c mRNA sequence
          Length = 868

 Score =  208 bits (105), Expect = 1e-50
 Identities = 284/343 (82%), Gaps = 3/343 (0%)
 Strand = Plus / Plus

                                                                       
Query: 96  agcaggctcgacgcgcgcacgctcaaggacgaggtggcgagcatggaccggcgcccgctc 155
           |||| ||| ||| |||| ||||||||||||||| || ||||||||||| ||      |||
Sbjct: 107 agcacgctggacacgcggacgctcaaggacgagctgacgagcatggacaggaagtgcctc 166

                                                                       
Query: 156 ctcgacctcggccacccgctcctcaaccgcgtcgccgacagcttcatccgcgccgccgga 215
            | ||||||||||||||||| ||||||||||||||||||||||||||||||||||| || 
Sbjct: 167 gtggacctcggccacccgctgctcaaccgcgtcgccgacagcttcatccgcgccgctggg 226

                                                                       
Query: 216 gtcggggcggcgagggcggtgtcgcgggaggcatacttcgtcaccgtcgaagggatggga 275
           ||||||||||| ||||| || ||  ||||||| ||| ||||||||||||||||| |   |
Sbjct: 227 gtcggggcggccagggccgtctccagggaggcctacgtcgtcaccgtcgaagggctttca 286

                                                                       
Query: 276 ggagattcgacggggctggacac---cagcgccaagaggagcaacttctcgagcgccaga 332
           ||||| ||| | ||||| ||| |   | ||| |||| ||||| | ||||| |||  ||||
Sbjct: 287 ggagactcgtccgggctagacgccgacggcggcaagcggagccatttctccagcatcaga 346

                                                                       
Query: 333 ggggatgacggccagaagtcgctcgatgcagtggttaaatcggcaggcaaggaggccatc 392
           || || |||||||||| ||||||||| |||||||| ||| |||| |||||||||||| ||
Sbjct: 347 ggtgacgacggccagaggtcgctcgacgcagtggtaaaaacggccggcaaggaggccttc 406

                                                      
Query: 393 cagtggggattggcagccggggtgtactccgggataacgtacg 435
           |||||||| ||||||||||| || ||||| ||| | |||||||
Sbjct: 407 cagtgggggttggcagccggagtctactcagggctcacgtacg 449
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  188 bits (95), Expect = 1e-44
 Identities = 140/155 (90%)
 Strand = Plus / Minus

                                                                            
Query: 114      acgctcaaggacgaggtggcgagcatggaccggcgcccgctcctcgacctcggccacccg 173
                ||||||||||| ||||||||||||||||||  |||   |||| |||||||||||||||||
Sbjct: 11221429 acgctcaaggaggaggtggcgagcatggacaagcggtggctcgtcgacctcggccacccg 11221370

                                                                            
Query: 174      ctcctcaaccgcgtcgccgacagcttcatccgcgccgccggagtcggggcggcgagggcg 233
                ||| ||||||||||||||||||||||||||||||||||||| |||||||| ||| |||| 
Sbjct: 11221369 ctcgtcaaccgcgtcgccgacagcttcatccgcgccgccggcgtcggggccgcgcgggcc 11221310

                                                   
Query: 234      gtgtcgcgggaggcatacttcgtcaccgtcgaagg 268
                || ||||||||||| ||||| ||||||||||||||
Sbjct: 11221309 gtctcgcgggaggcctactttgtcaccgtcgaagg 11221275



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 62/69 (89%)
 Strand = Plus / Minus

                                                                            
Query: 399      ggattggcagccggggtgtactccgggataacgtacggcctgagagaggccagagggcac 458
                |||||||| |||||||||||||| ||  | |||||||||||||||||||||||||||  |
Sbjct: 11220498 ggattggcggccggggtgtactctggactgacgtacggcctgagagaggccagagggtgc 11220439

                         
Query: 459      catgactgg 467
                |||||||||
Sbjct: 11220438 catgactgg 11220430



 Score = 48.1 bits (24), Expect = 0.028
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                    
Query: 332      aggggatgacggccagaagtcgctcgatgcagtggt 367
                ||||||||| |||||||||||||| ||||| |||||
Sbjct: 11220768 aggggatgatggccagaagtcgcttgatgccgtggt 11220733
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>dbj|AP003206.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1146F03
          Length = 137047

 Score =  188 bits (95), Expect = 1e-44
 Identities = 140/155 (90%)
 Strand = Plus / Minus

                                                                          
Query: 114    acgctcaaggacgaggtggcgagcatggaccggcgcccgctcctcgacctcggccacccg 173
              ||||||||||| ||||||||||||||||||  |||   |||| |||||||||||||||||
Sbjct: 113222 acgctcaaggaggaggtggcgagcatggacaagcggtggctcgtcgacctcggccacccg 113163

                                                                          
Query: 174    ctcctcaaccgcgtcgccgacagcttcatccgcgccgccggagtcggggcggcgagggcg 233
              ||| ||||||||||||||||||||||||||||||||||||| |||||||| ||| |||| 
Sbjct: 113162 ctcgtcaaccgcgtcgccgacagcttcatccgcgccgccggcgtcggggccgcgcgggcc 113103

                                                 
Query: 234    gtgtcgcgggaggcatacttcgtcaccgtcgaagg 268
              || ||||||||||| ||||| ||||||||||||||
Sbjct: 113102 gtctcgcgggaggcctactttgtcaccgtcgaagg 113068



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 62/69 (89%)
 Strand = Plus / Minus

                                                                          
Query: 399    ggattggcagccggggtgtactccgggataacgtacggcctgagagaggccagagggcac 458
              |||||||| |||||||||||||| ||  | |||||||||||||||||||||||||||  |
Sbjct: 112291 ggattggcggccggggtgtactctggactgacgtacggcctgagagaggccagagggtgc 112232

                       
Query: 459    catgactgg 467
              |||||||||
Sbjct: 112231 catgactgg 112223



 Score = 48.1 bits (24), Expect = 0.028
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                  
Query: 332    aggggatgacggccagaagtcgctcgatgcagtggt 367
              ||||||||| |||||||||||||| ||||| |||||
Sbjct: 112561 aggggatgatggccagaagtcgcttgatgccgtggt 112526
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>dbj|AP002871.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0475H04
          Length = 143337

 Score =  188 bits (95), Expect = 1e-44
 Identities = 140/155 (90%)
 Strand = Plus / Minus

                                                                        
Query: 114  acgctcaaggacgaggtggcgagcatggaccggcgcccgctcctcgacctcggccacccg 173
            ||||||||||| ||||||||||||||||||  |||   |||| |||||||||||||||||
Sbjct: 8834 acgctcaaggaggaggtggcgagcatggacaagcggtggctcgtcgacctcggccacccg 8775

                                                                        
Query: 174  ctcctcaaccgcgtcgccgacagcttcatccgcgccgccggagtcggggcggcgagggcg 233
            ||| ||||||||||||||||||||||||||||||||||||| |||||||| ||| |||| 
Sbjct: 8774 ctcgtcaaccgcgtcgccgacagcttcatccgcgccgccggcgtcggggccgcgcgggcc 8715

                                               
Query: 234  gtgtcgcgggaggcatacttcgtcaccgtcgaagg 268
            || ||||||||||| ||||| ||||||||||||||
Sbjct: 8714 gtctcgcgggaggcctactttgtcaccgtcgaagg 8680



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 62/69 (89%)
 Strand = Plus / Minus

                                                                        
Query: 399  ggattggcagccggggtgtactccgggataacgtacggcctgagagaggccagagggcac 458
            |||||||| |||||||||||||| ||  | |||||||||||||||||||||||||||  |
Sbjct: 7903 ggattggcggccggggtgtactctggactgacgtacggcctgagagaggccagagggtgc 7844

                     
Query: 459  catgactgg 467
            |||||||||
Sbjct: 7843 catgactgg 7835



 Score = 48.1 bits (24), Expect = 0.028
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                
Query: 332  aggggatgacggccagaagtcgctcgatgcagtggt 367
            ||||||||| |||||||||||||| ||||| |||||
Sbjct: 8173 aggggatgatggccagaagtcgcttgatgccgtggt 8138
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>gb|AY111174.1| Zea mays CL27726_1 mRNA sequence
          Length = 802

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 90/106 (84%)
 Strand = Plus / Minus

                                                                       
Query: 96  agcaggctcgacgcgcgcacgctcaaggacgaggtggcgagcatggaccggcgcccgctc 155
           |||| ||| ||| |||| ||||||||||||||| || ||||||||||| ||      |||
Sbjct: 711 agcacgctggacacgcggacgctcaaggacgagctgacgagcatggacaggaagtgcctc 652

                                                         
Query: 156 ctcgacctcggccacccgctcctcaaccgcgtcgccgacagcttca 201
            | ||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 651 gtggacctcggccacccgctgctcaaccgcgtcgccgacagcttca 606



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 155/198 (78%), Gaps = 3/198 (1%)
 Strand = Plus / Minus

                                                                       
Query: 241 gggaggcatacttcgtcaccgtcgaagggatgggaggagattcgacggggctggacacca 300
           ||||||| ||| ||||||||||||||||| |   |||||| ||| | ||||| ||| || 
Sbjct: 566 gggaggcctacgtcgtcaccgtcgaagggctttcaggagactcgtccgggctagacgccg 507

                                                                       
Query: 301 ---gcgccaagaggagcaacttctcgagcgccagaggggatgacggccagaagtcgctcg 357
              ||| |||| ||||| | ||||| |||  |||||| || |||||||||| ||||||||
Sbjct: 506 acggcggcaagcggagccatttctccagcatcagaggtgacgacggccagaggtcgctcg 447

                                                                       
Query: 358 atgcagtggttaaatcggcaggcaaggaggccatccagtggggattggcagccggggtgt 417
           | ||||||||     |||| |||||||||||| ||||||     ||||||||||| || |
Sbjct: 446 acgcagtggtnnnnncggccggcaaggaggccttccagtnnnnnttggcagccggagtct 387

                             
Query: 418 actccgggataacgtacg 435
           |||| ||| | |||||||
Sbjct: 386 actcagggctcacgtacg 369
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 43/44 (97%)
 Strand = Plus / Plus

                                                            
Query: 157      tcgacctcggccacccgctcctcaaccgcgtcgccgacagcttc 200
                ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 10820522 tcgacctcggccacccgctcctcaaccgcgtcgccgagagcttc 10820565
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>gb|AC135908.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1275B08,
             from chromosome 3, complete sequence
          Length = 108833

 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 43/44 (97%)
 Strand = Plus / Minus

                                                         
Query: 157   tcgacctcggccacccgctcctcaaccgcgtcgccgacagcttc 200
             ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 34365 tcgacctcggccacccgctcctcaaccgcgtcgccgagagcttc 34322
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 43/44 (97%)
 Strand = Plus / Plus

                                                            
Query: 157      tcgacctcggccacccgctcctcaaccgcgtcgccgacagcttc 200
                ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 10818623 tcgacctcggccacccgctcctcaaccgcgtcgccgagagcttc 10818666
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>dbj|AK063714.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-120-C03, full
           insert sequence
          Length = 839

 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 43/44 (97%)
 Strand = Plus / Plus

                                                       
Query: 157 tcgacctcggccacccgctcctcaaccgcgtcgccgacagcttc 200
           ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 178 tcgacctcggccacccgctcctcaaccgcgtcgccgagagcttc 221
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>ref|XM_569079.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein
           (CNB00700) partial mRNA
          Length = 5953

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 57  gaggtagaagaagacacggacg 78
           ||||||||||||||||||||||
Sbjct: 977 gaggtagaagaagacacggacg 956
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>gb|AE017342.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 2, complete
              sequence
          Length = 1632307

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 57     gaggtagaagaagacacggacg 78
              ||||||||||||||||||||||
Sbjct: 199904 gaggtagaagaagacacggacg 199883
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>gb|AC144384.4| Pan troglodytes BAC clone CH251-456K17 from X, complete sequence
          Length = 220712

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 435    ggcctgagagaggccagagggcacc 459
              ||||||||||||||| |||||||||
Sbjct: 122566 ggcctgagagaggcctgagggcacc 122590
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>gb|AC145689.4| Pan troglodytes BAC clone CH251-184I22 from X, complete sequence
          Length = 181915

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 435   ggcctgagagaggccagagggcacc 459
             ||||||||||||||| |||||||||
Sbjct: 75875 ggcctgagagaggcctgagggcacc 75851
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>ref|NG_002382.2| Homo sapiens melanoma antigen pseudogene, family A (psMAGEA) on
            chromosome X
          Length = 5314

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 435  ggcctgagagaggccagagggcacc 459
            ||||||||||||||| |||||||||
Sbjct: 1300 ggcctgagagaggcccgagggcacc 1324
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>gb|U82671.5| Homo sapiens chromosome X multiple clones map q28, complete sequence
          Length = 324604

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 435   ggcctgagagaggccagagggcacc 459
             ||||||||||||||| |||||||||
Sbjct: 76976 ggcctgagagaggcccgagggcacc 76952
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>gb|AF002997.4| Homo sapiens chromosome X multiple clones map q28, complete sequence
          Length = 245179

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 435    ggcctgagagaggccagagggcacc 459
              ||||||||||||||| |||||||||
Sbjct: 143178 ggcctgagagaggcccgagggcacc 143202
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>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome
          Length = 3052398

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 220    gggcggcgagggcggtgtcgc 240
              |||||||||||||||||||||
Sbjct: 308672 gggcggcgagggcggtgtcgc 308692
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>emb|AJ011921.1|HVU011921 Hordeum vulgare mRNA for putative amino acid selective channel
           protein
          Length = 674

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 157 tcgacctcggccacccgctcctcaaccgc 185
           ||||||||||| ||||||| |||||||||
Sbjct: 82  tcgacctcggcaacccgctgctcaaccgc 110
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>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome
          Length = 2584158

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 217    tcggggcggcgagggcggtg 236
              ||||||||||||||||||||
Sbjct: 958251 tcggggcggcgagggcggtg 958232
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>gb|AE007264.1| Sinorhizobium meliloti 1021 plasmid pSymA section 70 of 121 of the
             complete plasmid sequence
          Length = 14625

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 220   gggcggcgagggcggtgtcg 239
             ||||||||||||||||||||
Sbjct: 13935 gggcggcgagggcggtgtcg 13916
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>emb|AL021392.5|HS439F8 Human DNA sequence from clone RP3-439F8 on chromosome 22q13.31-33,
             complete sequence
          Length = 120206

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 47    agctcagagagaggtagaagaaga 70
             |||||||||||||| |||||||||
Sbjct: 96237 agctcagagagaggaagaagaaga 96260
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>gb|AC015933.9| Homo sapiens chromosome 18, clone CTD-2023G8, complete sequence
          Length = 249021

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 46     gagctcagagagaggtagaa 65
              ||||||||||||||||||||
Sbjct: 196055 gagctcagagagaggtagaa 196036
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>emb|AL645842.15| Mouse DNA sequence from clone RP23-20A9 on chromosome 11 Contains two
             novel genes and the 3' end of the Accn1 gene for neuronal
             amiloride-sensitive cation channel 1 (degenerin), complete
             sequence
          Length = 114190

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 82    gaggagagatgggcagcagg 101
             ||||||||||||||||||||
Sbjct: 55240 gaggagagatgggcagcagg 55259
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>dbj|D25413.1|TTHPROC Thermus thermophilus proC gene for pyrroline-5-carboxylate reductase,
            complete cds
          Length = 2678

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 118  tcaaggacgaggtggcgagc 137
            ||||||||||||||||||||
Sbjct: 1606 tcaaggacgaggtggcgagc 1625
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>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome
          Length = 3561584

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 434     cggcctgagagaggccagag 453
               ||||||||||||||||||||
Sbjct: 3009083 cggcctgagagaggccagag 3009064
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>gb|AC157353.2| Mus musculus BAC clone RP24-236H23 from chromosome 12, complete sequence
          Length = 188463

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 53     gagagaggtagaagaagaca 72
              ||||||||||||||||||||
Sbjct: 184924 gagagaggtagaagaagaca 184943
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 219      ggggcggcgagggcggtgtcgcgg 242
                |||||||||||||||||| |||||
Sbjct: 23002202 ggggcggcgagggcggtggcgcgg 23002225
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 215     agtcggggcggcgagggcgg 234
               ||||||||||||||||||||
Sbjct: 8391523 agtcggggcggcgagggcgg 8391542
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>ref|XM_230571.3| PREDICTED: Rattus norvegicus similar to Adapter-related protein
            complex 4 epsilon 1 subunit (Epsilon subunit of AP-4)
            (AP-4 adapter complex epsilon subunit) (LOC311404), mRNA
          Length = 3402

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 296  caccagcgccaagaggagca 315
            ||||||||||||||||||||
Sbjct: 1936 caccagcgccaagaggagca 1955
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>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome
          Length = 1849742

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 118    tcaaggacgaggtggcgagc 137
              ||||||||||||||||||||
Sbjct: 815579 tcaaggacgaggtggcgagc 815598
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>dbj|AP005908.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1121_A05
          Length = 172668

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 219   ggggcggcgagggcggtgtcgcgg 242
             |||||||||||||||||| |||||
Sbjct: 77416 ggggcggcgagggcggtggcgcgg 77439
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>gb|AE005007.1| Halobacterium sp. NRC-1 section 38 of 170 of the complete genome
          Length = 10293

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 101  gctcgacgcgcgcacgctcaagga 124
            |||||||| |||||||||||||||
Sbjct: 1620 gctcgacgagcgcacgctcaagga 1597
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>gb|AC155931.2| Mus musculus BAC clone RP23-289D4 from 9, complete sequence
          Length = 189845

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 450   agagggcaccatgactggaagaca 473
             ||||| ||||||||||||||||||
Sbjct: 51074 agaggccaccatgactggaagaca 51051
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>gb|AC166329.3| Pan troglodytes BAC clone CH251-143I6 from chromosome unknown, complete
              sequence
          Length = 173896

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 46     gagctcagagagaggtagaa 65
              ||||||||||||||||||||
Sbjct: 122101 gagctcagagagaggtagaa 122082
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 152     gctcctcgacctcggccacc 171
               ||||||||||||||||||||
Sbjct: 4323760 gctcctcgacctcggccacc 4323741
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>emb|CT030730.7| Mouse DNA sequence from clone RP24-252L17 on chromosome 9, complete
              sequence
          Length = 151456

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 450    agagggcaccatgactggaagaca 473
              ||||| ||||||||||||||||||
Sbjct: 144377 agaggccaccatgactggaagaca 144354
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>gb|AE017221.1| Thermus thermophilus HB27, complete genome
          Length = 1894877

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 118    tcaaggacgaggtggcgagc 137
              ||||||||||||||||||||
Sbjct: 486659 tcaaggacgaggtggcgagc 486678


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,154,782
Number of Sequences: 3902068
Number of extensions: 3154782
Number of successful extensions: 61992
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 61207
Number of HSP's gapped (non-prelim): 779
length of query: 501
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 479
effective length of database: 17,147,199,772
effective search space: 8213508690788
effective search space used: 8213508690788
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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