ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast52a07 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_473601.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3315 Score = 450 bits (227), Expect = e-123 Identities = 362/407 (88%) Strand = Plus / Plus Query: 11 accgtgctggccatcttacggcttccttcaacctcagctgatggcgccgtggtggtcgag 70 ||||||||||| ||| ||||||||||||| |||||| ||||||||||||||||| | ||| Sbjct: 2455 accgtgctggcgatcctacggcttccttccacctcatctgatggcgccgtggtgattgag 2514 Query: 71 gagggctctttcaggaaagaggccgagtctctaggcagggtgaagcacagaaacctcacc 130 |||||||| |||||||| ||||||||||| || |||| |||||||||||| |||||||| Sbjct: 2515 gagggctcgttcaggaaggaggccgagtccctcggcaaggtgaagcacaggaacctcact 2574 Query: 131 gttctccgtggctactacgccgggccgccgccggatgttcgtctgctggtatatgactac 190 || ||||||||||| ||||||||||||||||| |||||||| |||||||| ||||||||| Sbjct: 2575 gtgctccgtggctattacgccgggccgccgccagatgttcggctgctggtctatgactac 2634 Query: 191 atgcccaatggcaacctcgccacattgctccaggaagcgtctcaccaagacggccacatc 250 |||||||| |||||||||||||| ||||| ||||||||||| ||||||||||| ||||| Sbjct: 2635 atgcccaacggcaacctcgccacgttgctgcaggaagcgtcgcaccaagacggacacatt 2694 Query: 251 ctcaactggccaatgaggcacctcatcgccctcggcgtctcccgcggcctcgcgttcctc 310 ||||| ||||||||||||||||| |||||||||||||||||||||||||| || || ||| Sbjct: 2695 ctcaattggccaatgaggcacctgatcgccctcggcgtctcccgcggccttgcttttctc 2754 Query: 311 caccagtccggcgtgatccacggagatgtcaagccacagaacatactctttgatgccgac 370 ||||||||||| || | ||||| || |||||||| |||||||| ||||| ||||||||| Sbjct: 2755 caccagtccggtgtcgtgcacggcgacgtcaagccgcagaacatcctcttcgatgccgac 2814 Query: 371 tttgagccacacctgtctgattttgggcttgagccgatggtggtgac 417 || ||||| |||||||| || || ||||| ||||| ||||||||||| Sbjct: 2815 ttcgagccgcacctgtccgacttcgggctggagccaatggtggtgac 2861
>emb|AL606639.3|OSJN00072 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0020J04, complete sequence Length = 164567 Score = 450 bits (227), Expect = e-123 Identities = 362/407 (88%) Strand = Plus / Plus Query: 11 accgtgctggccatcttacggcttccttcaacctcagctgatggcgccgtggtggtcgag 70 ||||||||||| ||| ||||||||||||| |||||| ||||||||||||||||| | ||| Sbjct: 124991 accgtgctggcgatcctacggcttccttccacctcatctgatggcgccgtggtgattgag 125050 Query: 71 gagggctctttcaggaaagaggccgagtctctaggcagggtgaagcacagaaacctcacc 130 |||||||| |||||||| ||||||||||| || |||| |||||||||||| |||||||| Sbjct: 125051 gagggctcgttcaggaaggaggccgagtccctcggcaaggtgaagcacaggaacctcact 125110 Query: 131 gttctccgtggctactacgccgggccgccgccggatgttcgtctgctggtatatgactac 190 || ||||||||||| ||||||||||||||||| |||||||| |||||||| ||||||||| Sbjct: 125111 gtgctccgtggctattacgccgggccgccgccagatgttcggctgctggtctatgactac 125170 Query: 191 atgcccaatggcaacctcgccacattgctccaggaagcgtctcaccaagacggccacatc 250 |||||||| |||||||||||||| ||||| ||||||||||| ||||||||||| ||||| Sbjct: 125171 atgcccaacggcaacctcgccacgttgctgcaggaagcgtcgcaccaagacggacacatt 125230 Query: 251 ctcaactggccaatgaggcacctcatcgccctcggcgtctcccgcggcctcgcgttcctc 310 ||||| ||||||||||||||||| |||||||||||||||||||||||||| || || ||| Sbjct: 125231 ctcaattggccaatgaggcacctgatcgccctcggcgtctcccgcggccttgcttttctc 125290 Query: 311 caccagtccggcgtgatccacggagatgtcaagccacagaacatactctttgatgccgac 370 ||||||||||| || | ||||| || |||||||| |||||||| ||||| ||||||||| Sbjct: 125291 caccagtccggtgtcgtgcacggcgacgtcaagccgcagaacatcctcttcgatgccgac 125350 Query: 371 tttgagccacacctgtctgattttgggcttgagccgatggtggtgac 417 || ||||| |||||||| || || ||||| ||||| ||||||||||| Sbjct: 125351 ttcgagccgcacctgtccgacttcgggctggagccaatggtggtgac 125397
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 450 bits (227), Expect = e-123 Identities = 362/407 (88%) Strand = Plus / Plus Query: 11 accgtgctggccatcttacggcttccttcaacctcagctgatggcgccgtggtggtcgag 70 ||||||||||| ||| ||||||||||||| |||||| ||||||||||||||||| | ||| Sbjct: 29058337 accgtgctggcgatcctacggcttccttccacctcatctgatggcgccgtggtgattgag 29058396 Query: 71 gagggctctttcaggaaagaggccgagtctctaggcagggtgaagcacagaaacctcacc 130 |||||||| |||||||| ||||||||||| || |||| |||||||||||| |||||||| Sbjct: 29058397 gagggctcgttcaggaaggaggccgagtccctcggcaaggtgaagcacaggaacctcact 29058456 Query: 131 gttctccgtggctactacgccgggccgccgccggatgttcgtctgctggtatatgactac 190 || ||||||||||| ||||||||||||||||| |||||||| |||||||| ||||||||| Sbjct: 29058457 gtgctccgtggctattacgccgggccgccgccagatgttcggctgctggtctatgactac 29058516 Query: 191 atgcccaatggcaacctcgccacattgctccaggaagcgtctcaccaagacggccacatc 250 |||||||| |||||||||||||| ||||| ||||||||||| ||||||||||| ||||| Sbjct: 29058517 atgcccaacggcaacctcgccacgttgctgcaggaagcgtcgcaccaagacggacacatt 29058576 Query: 251 ctcaactggccaatgaggcacctcatcgccctcggcgtctcccgcggcctcgcgttcctc 310 ||||| ||||||||||||||||| |||||||||||||||||||||||||| || || ||| Sbjct: 29058577 ctcaattggccaatgaggcacctgatcgccctcggcgtctcccgcggccttgcttttctc 29058636 Query: 311 caccagtccggcgtgatccacggagatgtcaagccacagaacatactctttgatgccgac 370 ||||||||||| || | ||||| || |||||||| |||||||| ||||| ||||||||| Sbjct: 29058637 caccagtccggtgtcgtgcacggcgacgtcaagccgcagaacatcctcttcgatgccgac 29058696 Query: 371 tttgagccacacctgtctgattttgggcttgagccgatggtggtgac 417 || ||||| |||||||| || || ||||| ||||| ||||||||||| Sbjct: 29058697 ttcgagccgcacctgtccgacttcgggctggagccaatggtggtgac 29058743 Score = 48.1 bits (24), Expect = 0.027 Identities = 33/36 (91%) Strand = Plus / Minus Query: 274 catcgccctcggcgtctcccgcggcctcgcgttcct 309 ||||||| |||||| | ||||||||||||||||||| Sbjct: 28237148 catcgccatcggcgccgcccgcggcctcgcgttcct 28237113
>dbj|AK102667.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033101N13, full insert sequence Length = 2375 Score = 450 bits (227), Expect = e-123 Identities = 362/407 (88%) Strand = Plus / Plus Query: 11 accgtgctggccatcttacggcttccttcaacctcagctgatggcgccgtggtggtcgag 70 ||||||||||| ||| ||||||||||||| |||||| ||||||||||||||||| | ||| Sbjct: 1011 accgtgctggcgatcctacggcttccttccacctcatctgatggcgccgtggtgattgag 1070 Query: 71 gagggctctttcaggaaagaggccgagtctctaggcagggtgaagcacagaaacctcacc 130 |||||||| |||||||| ||||||||||| || |||| |||||||||||| |||||||| Sbjct: 1071 gagggctcgttcaggaaggaggccgagtccctcggcaaggtgaagcacaggaacctcact 1130 Query: 131 gttctccgtggctactacgccgggccgccgccggatgttcgtctgctggtatatgactac 190 || ||||||||||| ||||||||||||||||| |||||||| |||||||| ||||||||| Sbjct: 1131 gtgctccgtggctattacgccgggccgccgccagatgttcggctgctggtctatgactac 1190 Query: 191 atgcccaatggcaacctcgccacattgctccaggaagcgtctcaccaagacggccacatc 250 |||||||| |||||||||||||| ||||| ||||||||||| ||||||||||| ||||| Sbjct: 1191 atgcccaacggcaacctcgccacgttgctgcaggaagcgtcgcaccaagacggacacatt 1250 Query: 251 ctcaactggccaatgaggcacctcatcgccctcggcgtctcccgcggcctcgcgttcctc 310 ||||| ||||||||||||||||| |||||||||||||||||||||||||| || || ||| Sbjct: 1251 ctcaattggccaatgaggcacctgatcgccctcggcgtctcccgcggccttgcttttctc 1310 Query: 311 caccagtccggcgtgatccacggagatgtcaagccacagaacatactctttgatgccgac 370 ||||||||||| || | ||||| || |||||||| |||||||| ||||| ||||||||| Sbjct: 1311 caccagtccggtgtcgtgcacggcgacgtcaagccgcagaacatcctcttcgatgccgac 1370 Query: 371 tttgagccacacctgtctgattttgggcttgagccgatggtggtgac 417 || ||||| |||||||| || || ||||| ||||| ||||||||||| Sbjct: 1371 ttcgagccgcacctgtccgacttcgggctggagccaatggtggtgac 1417
>gb|BT023963.1| Zea mays clone EL01N0413F10 mRNA sequence Length = 2088 Score = 347 bits (175), Expect = 2e-92 Identities = 325/375 (86%) Strand = Plus / Plus Query: 50 gatggcgccgtggtggtcgaggagggctctttcaggaaagaggccgagtctctaggcagg 109 ||||| ||||||||| | || || || || ||||||||||||||||||||||| || | | Sbjct: 678 gatggtgccgtggtgattgatgaagggtcgttcaggaaagaggccgagtctctcgggaag 737 Query: 110 gtgaagcacagaaacctcaccgttctccgtggctactacgccgggccgccgccggatgtt 169 ||||||||||| ||||| || || |||||||||||||||||||| || ||||||||||| Sbjct: 738 gtgaagcacaggaacctgactgtgctccgtggctactacgccggtcctccgccggatgtc 797 Query: 170 cgtctgctggtatatgactacatgcccaatggcaacctcgccacattgctccaggaagcg 229 || |||||||| || |||||||||||||| |||||||||||||| ||||| ||||||||| Sbjct: 798 cggctgctggtctacgactacatgcccaacggcaacctcgccacgttgctgcaggaagcg 857 Query: 230 tctcaccaagacggccacatcctcaactggccaatgaggcacctcatcgccctcggcgtc 289 || ||||| ||||| ||||||||||||||||||||||||||||||||||| || |||||| Sbjct: 858 tcgcaccaggacgggcacatcctcaactggccaatgaggcacctcatcgcgctgggcgtc 917 Query: 290 tcccgcggcctcgcgttcctccaccagtccggcgtgatccacggagatgtcaagccacag 349 || |||||||| |||||||| || ||||||||||| | ||||| || || ||||| ||| Sbjct: 918 tcgcgcggccttgcgttcctgcatcagtccggcgtcgtgcacggcgacgtgaagccgcag 977 Query: 350 aacatactctttgatgccgactttgagccacacctgtctgattttgggcttgagccgatg 409 ||||| ||||| || |||||||| ||||| |||||||| || || || || ||||||||| Sbjct: 978 aacatcctcttcgacgccgacttcgagccgcacctgtcggacttcggcctggagccgatg 1037 Query: 410 gtggtgactgcgggt 424 |||||||| |||||| Sbjct: 1038 gtggtgaccgcgggt 1052
>gb|AY111420.1| Zea mays CL53654_1 mRNA sequence Length = 843 Score = 329 bits (166), Expect = 5e-87 Identities = 335/390 (85%), Gaps = 1/390 (0%) Strand = Plus / Plus Query: 29 cggcttccttcaacctcagctgatggcgccgtggtggtcgaggagggctctttcaggaaa 88 |||||||| || || || |||||||| ||||||||| | || || || || ||||||||| Sbjct: 245 cggcttccgtccacgtctgctgatggtgccgtggtgattgatgaagggtcgttcaggaaa 304 Query: 89 gaggccgagtctctaggcagggtgaagcacagaaacctcaccgttctccgtggctactac 148 ||||| || ||||| || | ||||||||||| |||||||| || ||||||||||||||| Sbjct: 305 gaggctgaatctctcgggaaagtgaagcacaggaacctcactgtgctccgtggctactac 364 Query: 149 gccgggccgccgccggatgttcgtctgctggtatatgactacatgcccaatggcaacctc 208 ||||| || ||||||||||| || |||||||| || |||||||||||||| ||||||||| Sbjct: 365 gccggtcctccgccggatgtccggctgctggtctacgactacatgcccaacggcaacctc 424 Query: 209 gccacattgctccaggaagcgtctcaccaagacggccacatcctcaactggccaatgagg 268 ||||| ||||| ||||||||||| ||||| ||||| |||||||||||||||||||||||| Sbjct: 425 gccacgttgctgcaggaagcgtcacaccaggacgggcacatcctcaactggccaatgagg 484 Query: 269 cacctcatcgccctcggcgtctcccgcggcctcgcgttcctccaccagtccggcgtgatc 328 ||||||||||| || |||||||| |||||||| |||||||| || ||||||||||| | Sbjct: 485 cacctcatcgcgctgggcgtctcgcgcggccttgcgttcctgcatcagtccggcgtcgtg 544 Query: 329 cacggagatgtcaagccacagaacatactctttgatgccgactttgagccacacctgtct 388 ||||| || || ||||| |||||||| ||||| || |||||||| ||||| |||||||| Sbjct: 545 cacggcgacgtgaagccgcagaacatcctcttcgacgccgacttcgagccgcacctgtcc 604 Query: 389 ga-ttttgggcttgagccgatggtggtgac 417 || ||| || || ||||||||||||||||| Sbjct: 605 gactttcggcctggagccgatggtggtgac 634
>ref|NM_119785.3| Arabidopsis thaliana ATP binding / kinase/ protein serine/threonine kinase AT4G36180 mRNA, complete cds Length = 3678 Score = 77.8 bits (39), Expect = 3e-11 Identities = 159/199 (79%) Strand = Plus / Plus Query: 177 tggtatatgactacatgcccaatggcaacctcgccacattgctccaggaagcgtctcacc 236 ||||||||||||||||||||||||| ||| | | || ||||||| ||||| || |||| Sbjct: 2881 tggtatatgactacatgcccaatgggaacttatctaccctgctccaagaagcttcccacc 2940 Query: 237 aagacggccacatcctcaactggccaatgaggcacctcatcgccctcggcgtctcccgcg 296 |||| ||||| |||| |||||||||||| | |||||||| || ||||| || | |||| Sbjct: 2941 aagatggccatgtcctaaactggccaatgcgccacctcatagctctcgggatcgcgcgcg 3000 Query: 297 gcctcgcgttcctccaccagtccggcgtgatccacggagatgtcaagccacagaacatac 356 | |||| |||||||| || ||| | || | || || ||| ||||||||||||| ||| Sbjct: 3001 gactcggattcctccatcaatccaacatggttcatggtgatatcaagccacagaatgtac 3060 Query: 357 tctttgatgccgactttga 375 |||| || || |||||||| Sbjct: 3061 tcttcgacgctgactttga 3079
>gb|AY080606.1| Arabidopsis thaliana putative receptor protein kinase (At4g36180) mRNA, partial cds Length = 1343 Score = 77.8 bits (39), Expect = 3e-11 Identities = 159/199 (79%) Strand = Plus / Plus Query: 177 tggtatatgactacatgcccaatggcaacctcgccacattgctccaggaagcgtctcacc 236 ||||||||||||||||||||||||| ||| | | || ||||||| ||||| || |||| Sbjct: 551 tggtatatgactacatgcccaatgggaacttatctaccctgctccaagaagcttcccacc 610 Query: 237 aagacggccacatcctcaactggccaatgaggcacctcatcgccctcggcgtctcccgcg 296 |||| ||||| |||| |||||||||||| | |||||||| || ||||| || | |||| Sbjct: 611 aagatggccatgtcctaaactggccaatgcgccacctcatagctctcgggatcgcgcgcg 670 Query: 297 gcctcgcgttcctccaccagtccggcgtgatccacggagatgtcaagccacagaacatac 356 | |||| |||||||| || ||| | || | || || ||| ||||||||||||| ||| Sbjct: 671 gactcggattcctccatcaatccaacatggttcatggtgatatcaagccacagaatgtac 730 Query: 357 tctttgatgccgactttga 375 |||| || || |||||||| Sbjct: 731 tcttcgacgctgactttga 749
>emb|BX826731.1|CNS0A4AM Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB58ZF05 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 3540 Score = 77.8 bits (39), Expect = 3e-11 Identities = 159/199 (79%) Strand = Plus / Plus Query: 177 tggtatatgactacatgcccaatggcaacctcgccacattgctccaggaagcgtctcacc 236 ||||||||||||||||||||||||| ||| | | || ||||||| ||||| || |||| Sbjct: 2743 tggtatatgactacatgcccaatgggaacttatctaccctgctccaagaagcttcccacc 2802 Query: 237 aagacggccacatcctcaactggccaatgaggcacctcatcgccctcggcgtctcccgcg 296 |||| ||||| |||| |||||||||||| | |||||||| || ||||| || | |||| Sbjct: 2803 aagatggccatgtcctaaactggccaatgcgccacctcatagctctcgggatcgcgcgcg 2862 Query: 297 gcctcgcgttcctccaccagtccggcgtgatccacggagatgtcaagccacagaacatac 356 | |||| |||||||| || ||| | || | || || ||| ||||||||||||| ||| Sbjct: 2863 gactcggattcctccatcaatccaacatggttcatggtgatatcaagccacagaatgtac 2922 Query: 357 tctttgatgccgactttga 375 |||| || || |||||||| Sbjct: 2923 tcttcgacgctgactttga 2941
>emb|AL161589.2|ATCHRIV85 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 85 Length = 198750 Score = 73.8 bits (37), Expect = 5e-10 Identities = 91/109 (83%) Strand = Plus / Minus Query: 177 tggtatatgactacatgcccaatggcaacctcgccacattgctccaggaagcgtctcacc 236 ||||||||||||||||||||||||| ||| | | || ||||||| ||||| || |||| Sbjct: 2269 tggtatatgactacatgcccaatgggaacttatctaccctgctccaagaagcttcccacc 2210 Query: 237 aagacggccacatcctcaactggccaatgaggcacctcatcgccctcgg 285 |||| ||||| |||| |||||||||||| | |||||||| || ||||| Sbjct: 2209 aagatggccatgtcctaaactggccaatgcgccacctcatagctctcgg 2161
>emb|AL161588.2|ATCHRIV84 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 84 Length = 195452 Score = 73.8 bits (37), Expect = 5e-10 Identities = 91/109 (83%) Strand = Plus / Minus Query: 177 tggtatatgactacatgcccaatggcaacctcgccacattgctccaggaagcgtctcacc 236 ||||||||||||||||||||||||| ||| | | || ||||||| ||||| || |||| Sbjct: 192721 tggtatatgactacatgcccaatgggaacttatctaccctgctccaagaagcttcccacc 192662 Query: 237 aagacggccacatcctcaactggccaatgaggcacctcatcgccctcgg 285 |||| ||||| |||| |||||||||||| | |||||||| || ||||| Sbjct: 192661 aagatggccatgtcctaaactggccaatgcgccacctcatagctctcgg 192613
>emb|AL022141.1|ATF23E13 Arabidopsis thaliana DNA chromosome 4, BAC clone F23E13 (ESSAII project) Length = 94695 Score = 73.8 bits (37), Expect = 5e-10 Identities = 91/109 (83%) Strand = Plus / Minus Query: 177 tggtatatgactacatgcccaatggcaacctcgccacattgctccaggaagcgtctcacc 236 ||||||||||||||||||||||||| ||| | | || ||||||| ||||| || |||| Sbjct: 25548 tggtatatgactacatgcccaatgggaacttatctaccctgctccaagaagcttcccacc 25489 Query: 237 aagacggccacatcctcaactggccaatgaggcacctcatcgccctcgg 285 |||| ||||| |||| |||||||||||| | |||||||| || ||||| Sbjct: 25488 aagatggccatgtcctaaactggccaatgcgccacctcatagctctcgg 25440
>dbj|AP006109.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT39G11, TM0195a, complete sequence Length = 73192 Score = 61.9 bits (31), Expect = 2e-06 Identities = 88/107 (82%) Strand = Plus / Minus Query: 170 cgtctgctggtatatgactacatgcccaatggcaacctcgccacattgctccaggaagcg 229 ||||| ||||| |||||||||||||| ||||| ||||||| || | || |||||||| Sbjct: 3785 cgtcttctggtgtatgactacatgccgaatggaaacctcggaacgcttctgcaggaagct 3726 Query: 230 tctcaccaagacggccacatcctcaactggccaatgaggcacctcat 276 || || ||||| ||||| |||| |||||||||||| |||| ||||| Sbjct: 3725 tcacagcaagatggccatgtcctgaactggccaatgcggcatctcat 3679
>ref|XM_473511.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1428 Score = 48.1 bits (24), Expect = 0.027 Identities = 33/36 (91%) Strand = Plus / Plus Query: 274 catcgccctcggcgtctcccgcggcctcgcgttcct 309 ||||||| |||||| | ||||||||||||||||||| Sbjct: 741 catcgccatcggcgccgcccgcggcctcgcgttcct 776
>emb|AL606628.3|OSJN00055 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0017B10, complete sequence Length = 150957 Score = 48.1 bits (24), Expect = 0.027 Identities = 33/36 (91%) Strand = Plus / Minus Query: 274 catcgccctcggcgtctcccgcggcctcgcgttcct 309 ||||||| |||||| | ||||||||||||||||||| Sbjct: 29456 catcgccatcggcgccgcccgcggcctcgcgttcct 29421
>ref|NM_106216.1| Arabidopsis thaliana ATP binding / kinase/ protein serine/threonine kinase AT1G75640 mRNA, complete cds Length = 3423 Score = 42.1 bits (21), Expect = 1.7 Identities = 66/81 (81%) Strand = Plus / Plus Query: 185 gactacatgcccaatggcaacctcgccacattgctccaggaagcgtctcaccaagacggc 244 |||||||||||||| || |||||||| || | | || ||||| |||||||||||||| Sbjct: 2740 gactacatgcccaacggaaacctcgctacgcttttgcaagaagcctctcaccaagacgga 2799 Query: 245 cacatcctcaactggccaatg 265 || || | |||||||||||| Sbjct: 2800 catgtcttgaactggccaatg 2820
>ref|XM_957528.1| Neurospora crassa OR74A hypothetical protein (NCU06981.1) partial mRNA Length = 1215 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 233 caccaagacggccacatcctcaact 257 |||||||||| |||||||||||||| Sbjct: 432 caccaagacgaccacatcctcaact 456
>ref|XM_327266.1| Neurospora crassa OR74A hypothetical protein (NCU06981.1) partial mRNA Length = 1215 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 233 caccaagacggccacatcctcaact 257 |||||||||| |||||||||||||| Sbjct: 432 caccaagacgaccacatcctcaact 456
>ref|XM_860254.1| PREDICTED: Canis familiaris hypothetical protein LOC609820 (LOC609820), mRNA Length = 501 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 280 cctcggcgtctcccgcggcct 300 ||||||||||||||||||||| Sbjct: 130 cctcggcgtctcccgcggcct 150
>gb|AY427142.1| Vitis amurensis isolate stkVa102 resistance protein candidate gene, partial cds Length = 496 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 177 tggtatatgactacatgcccaatgg 201 |||| |||||||||||||||||||| Sbjct: 199 tggtctatgactacatgcccaatgg 223
>emb|BX950851.1| Erwinia carotovora subsp. atroseptica SCRI1043, complete genome Length = 5064019 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 269 cacctcatcgccctcggcgtc 289 ||||||||||||||||||||| Sbjct: 1712861 cacctcatcgccctcggcgtc 1712841
>gb|AF445779.1|AF445779 Triticum aestivum clone KSUK955 kinase R-like protein gene, partial sequence Length = 515 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 177 tggtatatgactacatgcccaatgg 201 |||||||||| |||||||||||||| Sbjct: 353 tggtatatgagtacatgcccaatgg 329
>gb|AC006434.5|AC006434 Genomic sequence for Arabidopsis thaliana BAC F10A5, complete sequence Length = 129547 Score = 42.1 bits (21), Expect = 1.7 Identities = 66/81 (81%) Strand = Plus / Plus Query: 185 gactacatgcccaatggcaacctcgccacattgctccaggaagcgtctcaccaagacggc 244 |||||||||||||| || |||||||| || | | || ||||| |||||||||||||| Sbjct: 55032 gactacatgcccaacggaaacctcgctacgcttttgcaagaagcctctcaccaagacgga 55091 Query: 245 cacatcctcaactggccaatg 265 || || | |||||||||||| Sbjct: 55092 catgtcttgaactggccaatg 55112
>ref|NM_194082.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3510 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 174 tgctggtatatgactacatgcccaatgg 201 ||||||| ||||| |||||||||||||| Sbjct: 2303 tgctggtttatgaatacatgcccaatgg 2330
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 174 tgctggtatatgactacatgcccaatgg 201 ||||||| ||||| |||||||||||||| Sbjct: 31777125 tgctggtttatgaatacatgcccaatgg 31777152
>gb|AC106017.11| Homo sapiens chromosome 17, clone RP11-744A16, complete sequence Length = 178625 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 377 ccacacctgtctgattttgg 396 |||||||||||||||||||| Sbjct: 134976 ccacacctgtctgattttgg 134995
>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome Length = 2462499 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 274 catcgccctcggcgtctcccgcgg 297 ||||||||||||||| |||||||| Sbjct: 234945 catcgccctcggcgtttcccgcgg 234922
>gb|AC127412.4| Mus musculus BAC clone RP23-234O14 from chromosome 16, complete sequence Length = 225685 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 401 gagccgatggtggtgactgc 420 |||||||||||||||||||| Sbjct: 159039 gagccgatggtggtgactgc 159020
>emb|AL035397.4|HS45P1 Human DNA sequence from clone RP6-45P1 on chromosome 22q11.22-12.3, complete sequence Length = 77601 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 83 aggaaagaggccgagtctctaggc 106 ||||||||||| |||||||||||| Sbjct: 39028 aggaaagaggctgagtctctaggc 39005
>gb|AY230443.1| Gibberella moniliformis kinesin (KLP7) gene, complete cds Length = 2048 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 271 cctcatcgccctcggcgtct 290 |||||||||||||||||||| Sbjct: 236 cctcatcgccctcggcgtct 255
>gb|AC092781.6| Oryza sativa chromosome 3 BAC OSJNBb0094O03 genomic sequence, complete sequence Length = 134496 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 174 tgctggtatatgactacatgcccaatgg 201 ||||||| ||||| |||||||||||||| Sbjct: 102351 tgctggtttatgaatacatgcccaatgg 102378
>gb|AC124066.6| Homo sapiens chromosome 17, clone RP11-135L13, complete sequence Length = 160380 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 377 ccacacctgtctgattttgg 396 |||||||||||||||||||| Sbjct: 151578 ccacacctgtctgattttgg 151559
>emb|AL645771.1|SCSCP2 Streptomyces coelicolor A3(2) plasmid SCP2 Length = 31317 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 cgccgtggtggtcgaggagg 74 |||||||||||||||||||| Sbjct: 20222 cgccgtggtggtcgaggagg 20241
>gb|AC022150.6| Homo sapiens chromosome 19 clone CTD-3099C6, complete sequence Length = 228156 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 375 agccacacctgtctgatttt 394 |||||||||||||||||||| Sbjct: 48904 agccacacctgtctgatttt 48923
>gb|AC144506.1| Homo sapiens chromosome 17, clone XXfos-800635C12, complete sequence Length = 36963 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 377 ccacacctgtctgattttgg 396 |||||||||||||||||||| Sbjct: 265 ccacacctgtctgattttgg 246
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 174 tgctggtatatgactacatgcccaatgg 201 ||||||| ||||| |||||||||||||| Sbjct: 31867641 tgctggtttatgaatacatgcccaatgg 31867668
>dbj|AK102670.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033101P17, full insert sequence Length = 3031 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 174 tgctggtatatgactacatgcccaatgg 201 ||||||| ||||| |||||||||||||| Sbjct: 1873 tgctggtttatgaatacatgcccaatgg 1900
>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence Length = 3131724 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 291 cccgcggcctcgcgttcctc 310 |||||||||||||||||||| Sbjct: 37166 cccgcggcctcgcgttcctc 37147
>dbj|AP006094.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT39H01, TM0172, complete sequence Length = 127731 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 50 gatggcgccgtggtggtcga 69 |||||||||||||||||||| Sbjct: 11253 gatggcgccgtggtggtcga 11234
>dbj|AB028025.1| Vigna unguiculata Vu-YLD mRNA for regulatory protein for wall yield threshold (yieldin), complete cds Length = 1272 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 cctcgcgttcctccaccagt 317 |||||||||||||||||||| Sbjct: 192 cctcgcgttcctccaccagt 211 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,988,697 Number of Sequences: 3902068 Number of extensions: 2988697 Number of successful extensions: 54179 Number of sequences better than 10.0: 40 Number of HSP's better than 10.0 without gapping: 38 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 53939 Number of HSP's gapped (non-prelim): 229 length of query: 495 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 473 effective length of database: 17,147,199,772 effective search space: 8110625492156 effective search space used: 8110625492156 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
