ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast52a04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY489191.1| Triticum aestivum N-myristoyl transferase mRNA, c... 299 2e-78
2ref|NM_191679.1| Oryza sativa (japonica cultivar-group), predic... 244 1e-61
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 244 1e-61
4dbj|AP003273.3| Oryza sativa (japonica cultivar-group) genomic D... 244 1e-61
5dbj|AK101457.1| Oryza sativa (japonica cultivar-group) cDNA clon... 244 1e-61
6ref|XM_614899.2| PREDICTED: Bos taurus similar to zinc finger pr... 46 0.046
7gb|AE016814.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 46 0.046
8ref|NM_207971.1| Eremothecium gossypii AAR077Cp (AAR077C), mRNA 46 0.046
9ref|XM_367304.1| Magnaporthe grisea 70-15 hypothetical protein (... 44 0.18
10ref|XM_957160.1| Neurospora crassa OR74A hypothetical protein (N... 44 0.18
11ref|XM_326400.1| Neurospora crassa OR74A hypothetical protein (N... 44 0.18
12ref|NM_193361.1| Oryza sativa (japonica cultivar-group), predic... 42 0.72
13gb|AY725469.1| Pleurostoma ootheca internal transcribed spacer 1... 42 0.72
14gb|AC119943.12| Mus musculus chromosome 10, clone RP24-271F24, c... 42 0.72
15gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete ... 42 0.72
16gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 42 0.72
17dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, c... 42 0.72
18gb|AE011677.1| Xanthomonas axonopodis pv. citri str. 306, secti... 42 0.72
19gb|AC160403.5| Mus musculus 10 BAC RP24-286J14 (Roswell Park Can... 42 0.72
20dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.72
21dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.72
22dbj|AP004614.4| Oryza sativa (japonica cultivar-group) genomic D... 42 0.72
23dbj|AP004231.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.72
24dbj|AP003863.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.72
25dbj|AP003487.2| Oryza sativa (japonica cultivar-group) genomic D... 42 0.72
26dbj|AP003811.2| Oryza sativa (japonica cultivar-group) genomic D... 42 0.72
27dbj|AK110461.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.72
28gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete... 42 0.72
29gb|AC145325.3| Oryza sativa (japonica cultivar-group) chromosome... 40 2.8
30gb|AY260564.1| Umbraulva olivascens internal transcribed spacer ... 40 2.8
31emb|BX640444.1| Bordetella bronchiseptica strain RB50, complete ... 40 2.8
32emb|BX640432.1| Bordetella parapertussis strain 12822, complete ... 40 2.8
33emb|BX640426.1| Bordetella parapertussis strain 12822, complete ... 40 2.8
34emb|BX640414.1| Bordetella pertussis strain Tohama I, complete g... 40 2.8
35gb|AE012232.1| Xanthomonas campestris pv. campestris str. ATCC 3... 40 2.8
36gb|CP000264.1| Jannaschia sp. CCS1, complete genome 40 2.8
37gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, comple... 40 2.8
38gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 40 2.8
39gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete g... 40 2.8
40dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.8
41gb|AF180355.1|AF180355 Brassica oleracea isolate B265 ABI1 prote... 40 2.8
42gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 2.8
43dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 40 2.8
44dbj|AP005619.3| Oryza sativa (japonica cultivar-group) genomic D... 40 2.8
45dbj|AB097640.1| Umbraulva amamiensis genes for ITS1, 5.8S riboso... 40 2.8
46emb|AJ234322.1|UOL234322 Ulva olivascens 5.8S rRNA gene and inte... 40 2.8
47gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 2.8 
>gb|AY489191.1| Triticum aestivum N-myristoyl transferase mRNA, complete cds
          Length = 1724

 Score =  299 bits (151), Expect = 2e-78
 Identities = 190/203 (93%)
 Strand = Plus / Plus

                                                                       
Query: 17  gcgccagcgcttccaccagcgacggcgcccccgcggcgccggaggacacctccatcgagg 76
           |||||||||| ||||||||||||| ||||| ||| ||||||||||||||||| |||||||
Sbjct: 153 gcgccagcgcctccaccagcgacgccgccctcgccgcgccggaggacacctcgatcgagg 212

                                                                       
Query: 77  cgcaggcgcggcgcgtgcaggagcacatgaccctcgcctccaaccccaccacccgccgcc 136
           ||| ||||||||||||||||||||||||||||||||||  |||||||||| |||||||||
Sbjct: 213 cgctggcgcggcgcgtgcaggagcacatgaccctcgccaacaaccccaccgcccgccgcc 272

                                                                       
Query: 137 acaagttctgggagacgcagcccgtgggtcagttcggcgacgtcgccgacgtctccctcc 196
           ||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||
Sbjct: 273 acaagttctgggagacgcagcccgtcggccagtttggcgacgtcgccgacgtctccctcc 332

                                  
Query: 197 ccgacggcgccatcgagccgccc 219
           ||||||| |||||||||||||||
Sbjct: 333 ccgacggtgccatcgagccgccc 355
to top
>ref|NM_191679.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1314

 Score =  244 bits (123), Expect = 1e-61
 Identities = 159/171 (92%)
 Strand = Plus / Plus

                                                                       
Query: 52  gcgccggaggacacctccatcgaggcgcaggcgcggcgcgtgcaggagcacatgaccctc 111
           ||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||| 
Sbjct: 67  gcgccggaggatacctcgatcgaggcgctggcgcggcgcgtgcaggagcacatgaccctg 126

                                                                       
Query: 112 gcctccaaccccaccacccgccgccacaagttctgggagacgcagcccgtgggtcagttc 171
           ||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 127 gcctccaaccccaccgcccgccgccacaagttctgggagacgcagccggtgggccagttc 186

                                                              
Query: 172 ggcgacgtcgccgacgtctccctccccgacggcgccatcgagccgcccacc 222
            |||||| ||||||   ||||||||||||||||||||||||||||||||||
Sbjct: 187 cgcgacgccgccgattcctccctccccgacggcgccatcgagccgcccacc 237
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  244 bits (123), Expect = 1e-61
 Identities = 159/171 (92%)
 Strand = Plus / Plus

                                                                            
Query: 52       gcgccggaggacacctccatcgaggcgcaggcgcggcgcgtgcaggagcacatgaccctc 111
                ||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||| 
Sbjct: 29405611 gcgccggaggatacctcgatcgaggcgctggcgcggcgcgtgcaggagcacatgaccctg 29405670

                                                                            
Query: 112      gcctccaaccccaccacccgccgccacaagttctgggagacgcagcccgtgggtcagttc 171
                ||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 29405671 gcctccaaccccaccgcccgccgccacaagttctgggagacgcagccggtgggccagttc 29405730

                                                                   
Query: 172      ggcgacgtcgccgacgtctccctccccgacggcgccatcgagccgcccacc 222
                 |||||| ||||||   ||||||||||||||||||||||||||||||||||
Sbjct: 29405731 cgcgacgccgccgattcctccctccccgacggcgccatcgagccgcccacc 29405781



 Score = 42.1 bits (21), Expect = 0.72
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 32       ccagcgacggcgcccccgcggcgcc 56
                |||||||||||||| ||||||||||
Sbjct: 20383406 ccagcgacggcgcctccgcggcgcc 20383430
to top
>dbj|AP003273.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0510F09
          Length = 138277

 Score =  244 bits (123), Expect = 1e-61
 Identities = 159/171 (92%)
 Strand = Plus / Plus

                                                                          
Query: 52     gcgccggaggacacctccatcgaggcgcaggcgcggcgcgtgcaggagcacatgaccctc 111
              ||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||| 
Sbjct: 100673 gcgccggaggatacctcgatcgaggcgctggcgcggcgcgtgcaggagcacatgaccctg 100732

                                                                          
Query: 112    gcctccaaccccaccacccgccgccacaagttctgggagacgcagcccgtgggtcagttc 171
              ||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 100733 gcctccaaccccaccgcccgccgccacaagttctgggagacgcagccggtgggccagttc 100792

                                                                 
Query: 172    ggcgacgtcgccgacgtctccctccccgacggcgccatcgagccgcccacc 222
               |||||| ||||||   ||||||||||||||||||||||||||||||||||
Sbjct: 100793 cgcgacgccgccgattcctccctccccgacggcgccatcgagccgcccacc 100843
to top
>dbj|AK101457.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033040C05, full
           insert sequence
          Length = 1760

 Score =  244 bits (123), Expect = 1e-61
 Identities = 159/171 (92%)
 Strand = Plus / Plus

                                                                       
Query: 52  gcgccggaggacacctccatcgaggcgcaggcgcggcgcgtgcaggagcacatgaccctc 111
           ||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||| 
Sbjct: 160 gcgccggaggatacctcgatcgaggcgctggcgcggcgcgtgcaggagcacatgaccctg 219

                                                                       
Query: 112 gcctccaaccccaccacccgccgccacaagttctgggagacgcagcccgtgggtcagttc 171
           ||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 220 gcctccaaccccaccgcccgccgccacaagttctgggagacgcagccggtgggccagttc 279

                                                              
Query: 172 ggcgacgtcgccgacgtctccctccccgacggcgccatcgagccgcccacc 222
            |||||| ||||||   ||||||||||||||||||||||||||||||||||
Sbjct: 280 cgcgacgccgccgattcctccctccccgacggcgccatcgagccgcccacc 330
to top
>ref|XM_614899.2| PREDICTED: Bos taurus similar to zinc finger protein 651 (LOC534952),
            mRNA
          Length = 2046

 Score = 46.1 bits (23), Expect = 0.046
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                       
Query: 32   ccagcgacggcgcccccgcggcgccgg 58
            |||||||||||||||||||||| ||||
Sbjct: 1874 ccagcgacggcgcccccgcggccccgg 1900
to top
>gb|AE016814.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome I,
              complete sequence
          Length = 691920

 Score = 46.1 bits (23), Expect = 0.046
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                         
Query: 137    acaagttctgggagacgcagcccgtgg 163
              ||||||||||| |||||||||||||||
Sbjct: 483532 acaagttctggaagacgcagcccgtgg 483506
to top
>ref|NM_207971.1| Eremothecium gossypii AAR077Cp (AAR077C), mRNA
          Length = 1359

 Score = 46.1 bits (23), Expect = 0.046
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 137 acaagttctgggagacgcagcccgtgg 163
           ||||||||||| |||||||||||||||
Sbjct: 113 acaagttctggaagacgcagcccgtgg 139
to top
>ref|XM_367304.1| Magnaporthe grisea 70-15 hypothetical protein (MG07229.4) partial
           mRNA
          Length = 1692

 Score = 44.1 bits (22), Expect = 0.18
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 137 acaagttctgggagacgcagcccgtg 162
           ||||||||||| ||||||||||||||
Sbjct: 446 acaagttctggcagacgcagcccgtg 471
to top
>ref|XM_957160.1| Neurospora crassa OR74A hypothetical protein (NCU06546.1) partial
           mRNA
          Length = 1662

 Score = 44.1 bits (22), Expect = 0.18
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 20  ccagcgcttccaccagcgacggcgcc 45
           |||||||||||||||||||| |||||
Sbjct: 407 ccagcgcttccaccagcgacagcgcc 432
to top
>ref|XM_326400.1| Neurospora crassa OR74A hypothetical protein (NCU06546.1) partial
           mRNA
          Length = 1662

 Score = 44.1 bits (22), Expect = 0.18
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 20  ccagcgcttccaccagcgacggcgcc 45
           |||||||||||||||||||| |||||
Sbjct: 407 ccagcgcttccaccagcgacagcgcc 432
to top
>ref|NM_193361.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1449

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 32   ccagcgacggcgcccccgcggcgcc 56
            |||||||||||||| ||||||||||
Sbjct: 1099 ccagcgacggcgcctccgcggcgcc 1075
to top
>gb|AY725469.1| Pleurostoma ootheca internal transcribed spacer 1, partial
           sequence; 5.8S ribosomal RNA gene, complete sequence;
           and internal transcribed spacer 2, partial sequence
          Length = 576

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 40  ggcgcccccgcggcgccggag 60
           |||||||||||||||||||||
Sbjct: 146 ggcgcccccgcggcgccggag 126
to top
>gb|AC119943.12| Mus musculus chromosome 10, clone RP24-271F24, complete sequence
          Length = 174009

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 106   accctcgcctccaaccccaccaccc 130
             ||||||||| |||||||||||||||
Sbjct: 10016 accctcgcccccaaccccaccaccc 10040
to top
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence
          Length = 2726152

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 159     cgtgggtcagttcggcgacgt 179
               |||||||||||||||||||||
Sbjct: 1208698 cgtgggtcagttcggcgacgt 1208678
to top
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 10      gcgccatgcgccagcgcttcc 30
               |||||||||||||||||||||
Sbjct: 6459287 gcgccatgcgccagcgcttcc 6459267
to top
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome
          Length = 4940217

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 24     cgcttccaccagcgacggcgc 44
              |||||||||||||||||||||
Sbjct: 538423 cgcttccaccagcgacggcgc 538403
to top
>gb|AE011677.1| Xanthomonas axonopodis pv. citri str. 306,  section 55 of 469 of the
            complete genome
          Length = 11565

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 24   cgcttccaccagcgacggcgc 44
            |||||||||||||||||||||
Sbjct: 2904 cgcttccaccagcgacggcgc 2884
to top
>gb|AC160403.5| Mus musculus 10 BAC RP24-286J14 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 180869

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 106   accctcgcctccaaccccaccaccc 130
             ||||||||| |||||||||||||||
Sbjct: 89061 accctcgcccccaaccccaccaccc 89085
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 40       ggcgcccccgcggcgccggaggaca 64
                |||||| ||||||||||||||||||
Sbjct: 20991841 ggcgccgccgcggcgccggaggaca 20991865
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 74      aggcgcaggcgcggcgcgtgcagga 98
               |||||| ||||||||||||||||||
Sbjct: 2297874 aggcgcgggcgcggcgcgtgcagga 2297898



 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 199     gacggcgccatcgagccgcc 218
               ||||||||||||||||||||
Sbjct: 8179839 gacggcgccatcgagccgcc 8179820
to top
>dbj|AP004614.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0042P21
          Length = 141230

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 32    ccagcgacggcgcccccgcggcgcc 56
             |||||||||||||| ||||||||||
Sbjct: 39521 ccagcgacggcgcctccgcggcgcc 39545
to top
>dbj|AP004231.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBa0026J14
          Length = 163496

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 32     ccagcgacggcgcccccgcggcgcc 56
              |||||||||||||| ||||||||||
Sbjct: 149439 ccagcgacggcgcctccgcggcgcc 149463
to top
>dbj|AP003863.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1058_A12
          Length = 152269

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 40    ggcgcccccgcggcgccggaggaca 64
             |||||| ||||||||||||||||||
Sbjct: 35140 ggcgccgccgcggcgccggaggaca 35164
to top
>dbj|AP003487.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0007O20
          Length = 147363

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 74    aggcgcaggcgcggcgcgtgcagga 98
             |||||| ||||||||||||||||||
Sbjct: 19675 aggcgcgggcgcggcgcgtgcagga 19699
to top
>dbj|AP003811.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1131_E05
          Length = 122216

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 40     ggcgcccccgcggcgccggaggaca 64
              |||||| ||||||||||||||||||
Sbjct: 119756 ggcgccgccgcggcgccggaggaca 119780
to top
>dbj|AK110461.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-166-F11, full
           insert sequence
          Length = 2096

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 40  ggcgcccccgcggcgccggaggaca 64
           |||||| ||||||||||||||||||
Sbjct: 400 ggcgccgccgcggcgccggaggaca 424
to top
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome
          Length = 4941439

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 24     cgcttccaccagcgacggcgc 44
              |||||||||||||||||||||
Sbjct: 550541 cgcttccaccagcgacggcgc 550521
to top
>gb|AC145325.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0034E03 map near 50283S, complete sequence
          Length = 134074

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 111   cgcctccaaccccaccaccc 130
             ||||||||||||||||||||
Sbjct: 86720 cgcctccaaccccaccaccc 86739
to top
>gb|AY260564.1| Umbraulva olivascens internal transcribed spacer 1, partial
           sequence; 5.8S ribosomal RNA gene, complete sequence;
           and internal transcribed spacer 2, partial sequence
          Length = 510

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 39  cggcgcccccgcggcgccgg 58
           ||||||||||||||||||||
Sbjct: 370 cggcgcccccgcggcgccgg 389
to top
>emb|BX640444.1| Bordetella bronchiseptica strain RB50, complete genome; segment 8/16
          Length = 349008

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 8    cagcgccatgcgccagcgct 27
            ||||||||||||||||||||
Sbjct: 5672 cagcgccatgcgccagcgct 5653
to top
>emb|BX640432.1| Bordetella parapertussis strain 12822, complete genome; segment 10/14
          Length = 346301

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 74    aggcgcaggcgcggcgcgtg 93
             ||||||||||||||||||||
Sbjct: 33966 aggcgcaggcgcggcgcgtg 33947
to top
>emb|BX640426.1| Bordetella parapertussis strain 12822, complete genome; segment 4/14
          Length = 348866

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 8      cagcgccatgcgccagcgct 27
              ||||||||||||||||||||
Sbjct: 274443 cagcgccatgcgccagcgct 274424
to top
>emb|BX640414.1| Bordetella pertussis strain Tohama I, complete genome; segment 4/12
          Length = 343243

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 8      cagcgccatgcgccagcgct 27
              ||||||||||||||||||||
Sbjct: 125794 cagcgccatgcgccagcgct 125775
to top
>gb|AE012232.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 140
           of 460 of the complete genome
          Length = 10215

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 14  catgcgccagcgcttccaccagcg 37
           |||||||||||||| |||||||||
Sbjct: 164 catgcgccagcgctgccaccagcg 187
to top
>gb|CP000264.1| Jannaschia sp. CCS1, complete genome
          Length = 4317977

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 170     tcggcgacgtcgccgacgtctccc 193
               ||||||||||||| ||||||||||
Sbjct: 4162479 tcggcgacgtcgcggacgtctccc 4162502
to top
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome
          Length = 3561584

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 18      cgccagcgcttccaccagcgacgg 41
               |||||||||||||| |||||||||
Sbjct: 2390720 cgccagcgcttccatcagcgacgg 2390743
to top
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 14      catgcgccagcgcttccaccagcg 37
               |||||||||||||| |||||||||
Sbjct: 3499039 catgcgccagcgctgccaccagcg 3499016
to top
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 167    agttcggcgacgtcgccgac 186
              ||||||||||||||||||||
Sbjct: 240654 agttcggcgacgtcgccgac 240635
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 111      cgcctccaaccccaccaccc 130
                ||||||||||||||||||||
Sbjct: 14740340 cgcctccaaccccaccaccc 14740321
to top
>gb|AF180355.1|AF180355 Brassica oleracea isolate B265 ABI1 protein (ABI1) gene, partial cds;
            RPS2 protein (RPS2) and N-myristoyl transferase (N-MYR)
            genes, complete cds; and CK1a protein (CK1a) gene,
            partial cds
          Length = 11725

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                
Query: 136  cacaagttctgggagacgcagcccgtgggtcagttc 171
            ||||||||||||||||| || ||||| || ||||||
Sbjct: 9113 cacaagttctgggagactcaacccgttgggcagttc 9078
to top
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 183     cgacgtctccctccccgacggcgc 206
               |||||||||| |||||||||||||
Sbjct: 4100729 cgacgtctccatccccgacggcgc 4100752
to top
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 170     tcggcgacgtcgccgacgtc 189
               ||||||||||||||||||||
Sbjct: 2076044 tcggcgacgtcgccgacgtc 2076063
to top
>dbj|AP005619.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0624H09
          Length = 158719

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 199   gacggcgccatcgagccgcc 218
             ||||||||||||||||||||
Sbjct: 72202 gacggcgccatcgagccgcc 72183
to top
>dbj|AB097640.1| Umbraulva amamiensis genes for ITS1, 5.8S ribosomal RNA, ITS2,
           partial and complete sequence,
           specimen_voucher:Herbarium of Graduate School of
           Science, Hokkaido University, Sapporo (SAP):095052
          Length = 529

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 39  cggcgcccccgcggcgccgg 58
           ||||||||||||||||||||
Sbjct: 382 cggcgcccccgcggcgccgg 401
to top
>emb|AJ234322.1|UOL234322 Ulva olivascens 5.8S rRNA gene and internal transcribed spacers 1
           and 2 (ITS1, ITS2)
          Length = 557

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 39  cggcgcccccgcggcgccgg 58
           ||||||||||||||||||||
Sbjct: 375 cggcgcccccgcggcgccgg 394
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 111      cgcctccaaccccaccaccc 130
                ||||||||||||||||||||
Sbjct: 14820777 cgcctccaaccccaccaccc 14820758


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,548,402
Number of Sequences: 3902068
Number of extensions: 1548402
Number of successful extensions: 123793
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 119962
Number of HSP's gapped (non-prelim): 3830
length of query: 222
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 200
effective length of database: 17,147,199,772
effective search space: 3429439954400
effective search space used: 3429439954400
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top