ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast52a02 |
|---|---|
| Clone Library Name | barley_pub |
>GLT4_WHEAT (P08489) Glutenin, high molecular weight subunit PW212 precursor| Length = 838 Score = 33.9 bits (76), Expect = 0.10 Identities = 15/45 (33%), Positives = 27/45 (60%) Frame = -3 Query: 321 APARPTRWQRPPASRPSYH*GPTSLSQYGELREGARNRRLSMSPQ 187 +P +P +WQ+P +P Y+ PTS Q G+L++ A+ ++ Q Sbjct: 156 SPQQPGQWQQPEQGQPGYY--PTSPQQPGQLQQPAQGQQPGQGQQ 198
>YBOX1_RAT (P62961) Nuclease sensitive element-binding protein 1| (Y-box-binding protein 1) (Y-box transcription factor) (YB-1) (CCAAT-binding transcription factor I subunit A) (CBF-A) (Enhancer factor I subunit A) (EFI-A) (DNA-binding protein B) (DBPB) Length = 321 Score = 32.0 bits (71), Expect = 0.39 Identities = 22/64 (34%), Positives = 30/64 (46%) Frame = -3 Query: 309 PTRWQRPPASRPSYH*GPTSLSQYGELREGARNRRLSMSPQDATQRLPVRRRRWQGWSRP 130 P +RP A RP Y P GE+ EGA N+ Q PVR+ ++G+ Sbjct: 192 PYYMRRPYARRPQYSNPPVQ----GEVMEGADNQGAG------EQGRPVRQNMYRGYRPR 241 Query: 129 YRRG 118 +RRG Sbjct: 242 FRRG 245
>YBOX1_MOUSE (P62960) Nuclease sensitive element-binding protein 1| (Y-box-binding protein 1) (Y-box transcription factor) (YB-1) (CCAAT-binding transcription factor I subunit A) (CBF-A) (Enhancer factor I subunit A) (EFI-A) (DNA-binding protein B) (DBPB) Length = 321 Score = 32.0 bits (71), Expect = 0.39 Identities = 22/64 (34%), Positives = 30/64 (46%) Frame = -3 Query: 309 PTRWQRPPASRPSYH*GPTSLSQYGELREGARNRRLSMSPQDATQRLPVRRRRWQGWSRP 130 P +RP A RP Y P GE+ EGA N+ Q PVR+ ++G+ Sbjct: 192 PYYMRRPYARRPQYSNPPVQ----GEVMEGADNQGAG------EQGRPVRQNMYRGYRPR 241 Query: 129 YRRG 118 +RRG Sbjct: 242 FRRG 245
>XDH_EMENI (Q12553) Xanthine dehydrogenase (EC 1.17.1.4) (Purine hydroxylase| I) Length = 1363 Score = 31.2 bits (69), Expect = 0.67 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = -1 Query: 272 PTTEGQQAFLSTVSCGKARETGGCRC 195 P + Q+F S + CGKAR GG C Sbjct: 184 PILDAAQSFTSPIGCGKARANGGSGC 209
>YBOX1_RABIT (Q28618) Nuclease sensitive element-binding protein 1| (Y-box-binding protein 1) (Y-box transcription factor) (YB-1) (CCAAT-binding transcription factor I subunit A) (CBF-A) (Enhancer factor I subunit A) (EFI-A) (p50) Length = 323 Score = 30.4 bits (67), Expect = 1.1 Identities = 21/64 (32%), Positives = 29/64 (45%) Frame = -3 Query: 309 PTRWQRPPASRPSYH*GPTSLSQYGELREGARNRRLSMSPQDATQRLPVRRRRWQGWSRP 130 P +RP RP Y P GE+ EGA N+ Q PVR+ ++G+ Sbjct: 194 PYYMRRPYGRRPQYSNPPVQ----GEVMEGADNQGAG------EQGRPVRQNMYRGYRPR 243 Query: 129 YRRG 118 +RRG Sbjct: 244 FRRG 247
>YBOX1_HUMAN (P67809) Nuclease sensitive element-binding protein 1| (Y-box-binding protein 1) (Y-box transcription factor) (YB-1) (CCAAT-binding transcription factor I subunit A) (CBF-A) (Enhancer factor I subunit A) (EFI-A) (DNA-binding protein B) (DBPB) Length = 323 Score = 30.4 bits (67), Expect = 1.1 Identities = 21/64 (32%), Positives = 29/64 (45%) Frame = -3 Query: 309 PTRWQRPPASRPSYH*GPTSLSQYGELREGARNRRLSMSPQDATQRLPVRRRRWQGWSRP 130 P +RP RP Y P GE+ EGA N+ Q PVR+ ++G+ Sbjct: 194 PYYMRRPYGRRPQYSNPPVQ----GEVMEGADNQGAG------EQGRPVRQNMYRGYRPR 243 Query: 129 YRRG 118 +RRG Sbjct: 244 FRRG 247
>YBOX1_BOVIN (P67808) Nuclease sensitive element-binding protein 1| (Y-box-binding protein 1) (Y-box transcription factor) (YB-1) (CCAAT-binding transcription factor I subunit A) (CBF-A) (Enhancer factor I subunit A) (EFI-A) (DNA-binding protein B) (DBPB) Length = 323 Score = 30.4 bits (67), Expect = 1.1 Identities = 21/64 (32%), Positives = 29/64 (45%) Frame = -3 Query: 309 PTRWQRPPASRPSYH*GPTSLSQYGELREGARNRRLSMSPQDATQRLPVRRRRWQGWSRP 130 P +RP RP Y P GE+ EGA N+ Q PVR+ ++G+ Sbjct: 194 PYYMRRPYGRRPQYSNPPVQ----GEVMEGADNQGAG------EQGRPVRQNMYRGYRPR 243 Query: 129 YRRG 118 +RRG Sbjct: 244 FRRG 247
>YBOX1_CHICK (Q06066) Nuclease sensitive element-binding protein 1 (Y-box| binding protein 1) (Y-box transcription factor) Length = 321 Score = 30.0 bits (66), Expect = 1.5 Identities = 21/64 (32%), Positives = 29/64 (45%) Frame = -3 Query: 309 PTRWQRPPASRPSYH*GPTSLSQYGELREGARNRRLSMSPQDATQRLPVRRRRWQGWSRP 130 P +RP RP Y P GE+ EGA N+ Q PVR+ ++G+ Sbjct: 192 PYYMRRPYGRRPQYSNPPVQ----GEIVEGADNQGAG------EQGRPVRQNMYRGYRPR 241 Query: 129 YRRG 118 +RRG Sbjct: 242 FRRG 245
>NKX25_CHICK (Q90788) Homeobox protein Nkx-2.5 (Homeobox protein NK-2 homolog E)| (cNKX-2.5) Length = 294 Score = 28.5 bits (62), Expect = 4.3 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 1/71 (1%) Frame = -3 Query: 318 PARPTRWQRPPASRPSYH*GPTSLSQYGELREGARNRRLSMSPQDATQR-LPVRRRRWQG 142 PA P + PPA P+ GP + YGE+ + A++ + A + L +R + Sbjct: 52 PALPELPEPPPAKPPAAFPGPYYVKSYGEM-DTAKDSKADKKELCALHKSLEQEKRELED 110 Query: 141 WSRPYRRGGRK 109 RP +R RK Sbjct: 111 PERPRQRKRRK 121
>DGC14_MOUSE (O70279) DGCR14 protein (DiGeorge syndrome critical region 14| homolog) (ES2 protein) (Expressed sequence 2 embryonic lethal) Length = 479 Score = 28.5 bits (62), Expect = 4.3 Identities = 10/26 (38%), Positives = 15/26 (57%) Frame = +2 Query: 185 SWGDIDNRRFRAPSRNSPY*ERLVGP 262 +WG+++N R SPY +R GP Sbjct: 320 TWGEVENTPLRVEGSESPYVDRTPGP 345
>YB3_XENLA (Q00436) B box-binding protein (Protein YB3)| Length = 305 Score = 28.1 bits (61), Expect = 5.7 Identities = 23/73 (31%), Positives = 31/73 (42%), Gaps = 4/73 (5%) Frame = -3 Query: 324 PAPAR----PTRWQRPPASRPSYH*GPTSLSQYGELREGARNRRLSMSPQDATQRLPVRR 157 P P R P +RP RP Y P GE EGA ++ Q PVR+ Sbjct: 166 PCPRRRYPPPFYSRRPYGRRPQYSNVPVQ----GESAEGAESQGAG------EQGRPVRQ 215 Query: 156 RRWQGWSRPYRRG 118 ++G+ +RRG Sbjct: 216 NMYRGFRPQFRRG 228
>POLR_ASGVP (P36309) Genome polyprotein (241 kDa polyprotein) (ORF1 polyprotein)| [Contains: Putative RNA-directed RNA polymerase/Helicase (EC 2.7.7.48) (EC 3.6.1.-); Coat protein] Length = 2105 Score = 27.7 bits (60), Expect = 7.4 Identities = 14/34 (41%), Positives = 18/34 (52%) Frame = +1 Query: 190 GRHRQPPVSRAFPQLTVLRKACWPSVVGGP*SWW 291 G HRQ S A L +RK+ WPS + P +W Sbjct: 1785 GLHRQ---SAAVKHLNSMRKSRWPSWIADPRCFW 1815
>LTBP4_MOUSE (Q8K4G1) Latent transforming growth factor beta-binding protein 4| precursor (LTBP-4) Length = 1666 Score = 27.7 bits (60), Expect = 7.4 Identities = 18/59 (30%), Positives = 23/59 (38%) Frame = -3 Query: 321 APARPTRWQRPPASRPSYH*GPTSLSQYGELREGARNRRLSMSPQDATQRLPVRRRRWQ 145 APA P+ RPPA P P + G + G R + DA + R WQ Sbjct: 1191 APASPSLPARPPAPPPPRRPSP---PRQGPVSSGRRECYFDTAAPDACDNILARNVTWQ 1246
>YPT53_YEAST (P36019) GTP-binding protein YPT53| Length = 220 Score = 27.7 bits (60), Expect = 7.4 Identities = 11/29 (37%), Positives = 15/29 (51%) Frame = -1 Query: 281 HGPPTTEGQQAFLSTVSCGKARETGGCRC 195 H T+ Q+ L + + RETGGC C Sbjct: 192 HDRTITDNQRIDLESTTVESTRETGGCNC 220
>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1| Length = 917 Score = 27.3 bits (59), Expect = 9.7 Identities = 22/66 (33%), Positives = 27/66 (40%), Gaps = 6/66 (9%) Frame = -3 Query: 330 RTPAPARPTRWQRP------PASRPSYH*GPTSLSQYGELREGARNRRLSMSPQDATQRL 169 R+P+ RP R R P RPS P+ R RR+ P+ R Sbjct: 291 RSPSHTRPRRRHRSRSRSYSPRRRPSPRRRPSP-------RRRTPPRRMPPPPRHRRSRS 343 Query: 168 PVRRRR 151 PVRRRR Sbjct: 344 PVRRRR 349
>PRT1_ESOLU (P02325) Protamine-1 (Protamine-I)| Length = 32 Score = 27.3 bits (59), Expect = 9.7 Identities = 14/25 (56%), Positives = 16/25 (64%) Frame = -3 Query: 183 ATQRLPVRRRRWQGWSRPYRRGGRK 109 A+ PVRRRR SR RRGGR+ Sbjct: 6 ASSGRPVRRRRRPKMSRRRRRGGRR 30
>KIF1C_HUMAN (O43896) Kinesin-like protein KIF1C| Length = 1103 Score = 27.3 bits (59), Expect = 9.7 Identities = 16/34 (47%), Positives = 18/34 (52%) Frame = -3 Query: 327 TPAPARPTRWQRPPASRPSYH*GPTSLSQYGELR 226 TP PA P R RPP+ R S+H SL G R Sbjct: 1010 TPHPATPAR--RPPSPRRSHHPRRNSLDGGGRSR 1041
>DGC14_HUMAN (Q96DF8) DGCR14 protein (DiGeorge syndrome critical region 14) (ES2| protein) Length = 476 Score = 27.3 bits (59), Expect = 9.7 Identities = 9/26 (34%), Positives = 15/26 (57%) Frame = +2 Query: 185 SWGDIDNRRFRAPSRNSPY*ERLVGP 262 +WG+++N R +PY +R GP Sbjct: 317 TWGEVENTPLRVEGSETPYVDRTPGP 342
>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1| (Ser/Arg-related nuclear matrix protein) (SR-related nuclear matrix protein of 160 kDa) (SRm160) Length = 904 Score = 27.3 bits (59), Expect = 9.7 Identities = 22/66 (33%), Positives = 27/66 (40%), Gaps = 6/66 (9%) Frame = -3 Query: 330 RTPAPARPTRWQRP------PASRPSYH*GPTSLSQYGELREGARNRRLSMSPQDATQRL 169 R+P+ RP R R P RPS P+ R RR+ P+ R Sbjct: 291 RSPSHTRPRRRHRSRSRSYSPRRRPSPRRRPSP-------RRRTPPRRMPPPPRHRRSRS 343 Query: 168 PVRRRR 151 PVRRRR Sbjct: 344 PVRRRR 349 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 37,775,394 Number of Sequences: 219361 Number of extensions: 601524 Number of successful extensions: 2046 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 1946 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2043 length of database: 80,573,946 effective HSP length: 87 effective length of database: 61,489,539 effective search space used: 1475748936 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
