>DNMT1_HUMAN (P26358) DNA (cytosine-5)-methyltransferase 1 (EC 2.1.1.37) (Dnmt1)|
           (DNA methyltransferase HsaI) (DNA MTase HsaI) (MCMT)
           (M.HsaI)
          Length = 1616

 Score = 33.9 bits (76), Expect = 0.11
 Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = -3

Query: 257 EEP-RVPDGRCQDGRERRRAPREENFAGDGRRHAPEEVVGGSLDRDRKCCMGSDEEEGGD 81
           EEP R   G   +  E R    E+      +   P++ +    DR+ +  + +DE+E GD
Sbjct: 220 EEPERAKSGTRTEKEEERDEKEEKRLRSQTKEPTPKQKLKEEPDREARAGVQADEDEDGD 279

Query: 80  EQHCERHGSR 51
           E+  ++H S+
Sbjct: 280 EKDEKKHRSQ 289

>CR1ID_BACTU (Q9XDL1) Pesticidal crystal protein cry1Id (Insecticidal|
           delta-endotoxin CryII(d)) (Crystaline entomocidal
           protoxin) (81 kDa crystal protein)
          Length = 719

 Score = 31.2 bits (69), Expect = 0.71
 Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
 Frame = +3

Query: 54  RTMALAMLLVSALFFVASHAAFPIPVQAAAD-----DFLRCM--SASVPGKVLFPRSSPS 212
           R M L +L + ALF       +PIP  A        D +  +  +AS      +  ++PS
Sbjct: 262 RDMTLMVLDLVALFPSYDTRMYPIPTSAQLTREVYTDAIGTVHPNASFASTTWYNNNAPS 321

Query: 213 FASVLAASVRNPRFL 257
           F+++ AA VRNP  L
Sbjct: 322 FSTIEAAVVRNPHLL 336

>YL_DROME (P98163) Putative vitellogenin receptor precursor (Protein yolkless)|
            (YL)
          Length = 1984

 Score = 30.8 bits (68), Expect = 0.93
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = -3

Query: 215  ERRRAPREENFAGDGRRHAPEEVVGGSLDRDRKCCMGSDEEEGGDEQHCER 63
            E RR P+          H+ E+ V    D++R+C    D  +  DEQHCE+
Sbjct: 1065 EHRRKPKVLCSPNQFACHSGEQCV----DKERRCDNRKDCHDHSDEQHCEK 1111

>RS3_RALEJ (Q46WF0) 30S ribosomal protein S3|
          Length = 264

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 18/48 (37%), Positives = 22/48 (45%)
 Frame = -3

Query: 281 ERPHHGRPEEPRVPDGRCQDGRERRRAPREENFAGDGRRHAPEEVVGG 138
           E P   R   P  P+GR ++G E R        AG GRR AP +   G
Sbjct: 217 EEPQDDRRRRPGRPEGRRREG-EGRPGGNRRGGAGAGRRAAPGDAKSG 263

>CWC25_GIBZE (Q4IRI9) Pre-mRNA-splicing factor CWC25|
          Length = 393

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 21/71 (29%), Positives = 30/71 (42%)
 Frame = -3

Query: 278 RPHHGRPEEPRVPDGRCQDGRERRRAPREENFAGDGRRHAPEEVVGGSLDRDRKCCMGSD 99
           R  + R + PR  DG  +D   RRR    +  +   R  + EE   G  DRD +   G  
Sbjct: 203 RRSYSRSQSPRRRDGSREDRHRRRRDDSRDRHSRRRRDGSDEE---GRRDRDNR-SGGDR 258

Query: 98  EEEGGDEQHCE 66
               GD +H +
Sbjct: 259 HRHDGDRRHSD 269

>GTSE1_HUMAN (Q9NYZ3) G2 and S phase expressed protein 1 (B99 homolog)|
          Length = 720

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
 Frame = -1

Query: 193 KRTL---PGTDADMHRRKSSAAAWTGIGNAAWEATKKRAETSSIAS 65
           K+TL   PG+ +++ R+ SS   W+G  +A       +A++S  AS
Sbjct: 294 KKTLLKAPGSTSNLARKSSSGPVWSGASSACTSPAVGKAKSSEFAS 339

>IF3A_HUMAN (Q14152) Eukaryotic translation initiation factor 3 subunit 10 (eIF-3|
            theta) (eIF3 p167) (eIF3 p180) (eIF3 p185) (eIF3a)
          Length = 1382

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = -3

Query: 263  RPEEPRVPDGRCQDGRERRRAPREENFAGDGRRHAPEEVVG-GSLDRDRKCCMGSDEEEG 87
            RP++ RVP     D R  RR P E+ F+   RR A ++     + D DR     +DE+ G
Sbjct: 951  RPDDDRVPRRGMDDDRGPRRGPEEDRFS---RRGADDDRPSWRNTDDDRPPRRIADEDRG 1007

>IF3A_MOUSE (P23116) Eukaryotic translation initiation factor 3 subunit 10 (eIF-3|
            theta) (eIF3 p167) (eIF3 p180) (eIF3 p185) (eIF3a) (p162
            protein) (Centrosomin)
          Length = 1344

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 5/79 (6%)
 Frame = -3

Query: 281  ERPHHGRPEEPRVPDGRCQDGRERRRAPREENFAGDGRRHAPEEVVGGSLDRDRKCCMGS 102
            ER    RP++ R+P     D R  RR P E+ F+  G             D DR     +
Sbjct: 945  ERESSLRPDDDRIPRRGLDDDRGPRRGPDEDRFSRRG------------TDDDRPSWRNA 992

Query: 101  DEEE-----GGDEQHCERH 60
            D++      G D++   RH
Sbjct: 993  DDDRPPRRIGDDDRGSWRH 1011

>SORL_MOUSE (O88307) Sortilin-related receptor precursor (Sorting protein-related|
            receptor containing LDLR class A repeats) (mSorLA)
            (SorLA-1) (Low-density lipoprotein receptor relative with
            11 ligand-binding repeats) (LDLR relative with 11
            ligand-binding
          Length = 2215

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 19/58 (32%), Positives = 24/58 (41%)
 Frame = -3

Query: 239  DGRCQDGRERRRAPREENFAGDGRRHAPEEVVGGSLDRDRKCCMGSDEEEGGDEQHCE 66
            D  CQDG +      E+   G    H P    G  +   + C    D  +G DEQHCE
Sbjct: 1221 DADCQDGSDEDPVSCEKKCNGF---HCPN---GTCIPSSKHCDGLRDCPDGSDEQHCE 1272

>DRS1_ASPFU (Q4WRV2) ATP-dependent RNA helicase drs1 (EC 3.6.1.-)|
          Length = 830

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -3

Query: 176 DGRRHAPEEVVGGSLDRDRKCCMGSDEEEGGDE 78
           DG   + ++V  GS D D     GS++EE GDE
Sbjct: 216 DGADESDDDVENGSNDSDDSEGKGSEDEESGDE 248

>PGKC_LEIMA (P50312) Phosphoglycerate kinase, glycosomal (EC 2.7.2.3)|
           (Phosphoglycerate kinase C) (gPGK)
          Length = 479

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
 Frame = -1

Query: 205 ELRGKRTLPG----TDADMHRRKSSAAAWTGIGNAAWEATKKRAETSSIASAMVRELQGI 38
           EL   +TLPG    TD D+  R +S     G+G+ + EA   R       +++VRE+  I
Sbjct: 400 ELLEGKTLPGVAILTDKDVKERGASCKFAFGVGSPSREACPLRCGHIFGGASIVREIVKI 459

Query: 37  ELCML 23
            + +L
Sbjct: 460 VVALL 464

>PAIRB_RAT (Q6AXS5) Plasminogen activator inhibitor 1 RNA-binding protein|
           (PAI1 RNA-binding protein 1) (PAI-RBP1) (SERPINE1
           mRNA-binding protein 1) (RDA288)
          Length = 407

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = -3

Query: 263 RPEEPRVPDGRCQDGRERRRAPREENFAGDGRRHAPEEVVGGSLDRDR 120
           RP++    DG+  D R  RR PRE  F     +   E+  GG    DR
Sbjct: 112 RPDQQLQGDGKIIDRRPERRPPRERRF----EKPLEEKGEGGEFSVDR 155

>PAIRB_MOUSE (Q9CY58) Plasminogen activator inhibitor 1 RNA-binding protein|
           (PAI1 RNA-binding protein 1) (PAI-RBP1) (SERPINE1
           mRNA-binding protein 1)
          Length = 407

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = -3

Query: 263 RPEEPRVPDGRCQDGRERRRAPREENFAGDGRRHAPEEVVGGSLDRDR 120
           RP++    DG+  D R  RR PRE  F     +   E+  GG    DR
Sbjct: 112 RPDQQLQGDGKLIDRRAERRPPRERRF----EKPLEEKGEGGEFSVDR 155

>TRM6_YEAST (P41814) tRNA (adenine-N(1)-)-methyltransferase non-catalytic|
           subunit TRM6 (tRNA(m1A58)-methyltransferase subunit
           TRM6) (tRNA(m1A58)MTase subunit TRM6) (General control
           nonderepressible protein 10) (Protein GCD10)
          Length = 478

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +2

Query: 5   VAVHELKHAELDALQFANH 61
           + +HE +HA LD L+FAN+
Sbjct: 269 IVIHENEHANLDLLKFANY 287

>CHRD_XENLA (Q91713) Chordin precursor (Organizer-specific secreted dorsalizing|
           factor)
          Length = 941

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
 Frame = -3

Query: 260 PEEPRVP-----DGRCQDGRERRRAPREENFAGDGRRHAPEEVVGGSLDRDRKCCMGS 102
           PEEP        +GR +D  + R+ PR  +F G  R H        + D DRKC + S
Sbjct: 665 PEEPEYEYEIYEEGRQRDPDDLRKDPRACSFEGQLRAHGSR----WAPDYDRKCSVCS 718

>NOTC3_RAT (Q9R172) Neurogenic locus notch homolog protein 3 precursor (Notch 3)|
            [Contains: Notch 3 extracellular truncation; Notch 3
            intracellular domain]
          Length = 2319

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = -3

Query: 260  PEEPRVPDGRCQDGRERRRAPREENFAGDG 171
            PEEPR P   CQ  R  +   RE N  G G
Sbjct: 1384 PEEPRCPRAACQAKRGDQNCDRECNSPGCG 1413

>HIG_DROME (Q09101) Locomotion-related protein Hikaru genki precursor|
          Length = 958

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 22/65 (33%), Positives = 26/65 (40%), Gaps = 11/65 (16%)
 Frame = -3

Query: 281 ERPHHGRPEEPRVPDGRCQDGR------ERRRAPREENFAGDGR-----RHAPEEVVGGS 135
           +  HHG PE+ R+   R Q  R       RRR   E    G GR     RHA       S
Sbjct: 137 DEDHHGDPEDKRLNANRKQGKRRRAGSGRRRRIENENGQTGRGRGSRYKRHAILHDTEAS 196

Query: 134 LDRDR 120
            + DR
Sbjct: 197 PETDR 201

>SMTA_ASTBI (P56707) Selenocysteine methyltransferase (EC 2.1.1.-)|
           (SECYS-methyltransferase) (SECYS-MT)
          Length = 338

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 18/65 (27%), Positives = 27/65 (41%)
 Frame = -1

Query: 244 FRTDAARTDANDGELRGKRTLPGTDADMHRRKSSAAAWTGIGNAAWEATKKRAETSSIAS 65
           +  D +    N G+     TL     D HRRK    A +G+   A+EA   + E  + A 
Sbjct: 141 YLADGSEFSGNYGDAIKSETLK----DFHRRKVQILADSGVDLLAFEAVPNKLEAQAYAD 196

Query: 64  AMVRE 50
            +  E
Sbjct: 197 LLEEE 201

>NOTC3_MOUSE (Q61982) Neurogenic locus notch homolog protein 3 precursor (Notch 3)|
            [Contains: Notch 3 extracellular truncation; Notch 3
            intracellular domain]
          Length = 2318

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = -3

Query: 260  PEEPRVPDGRCQDGRERRRAPREENFAGDG 171
            PEEPR P   CQ  R  +   RE N  G G
Sbjct: 1383 PEEPRCPRAACQAKRGDQNCDRECNTPGCG 1412

>CNGB1_BOVIN (Q28181) 240 kDa protein of rod photoreceptor CNG-channel|
           [Contains: Glutamic acid-rich protein (GARP);
           Cyclic-nucleotide-gated cation channel 4 (CNG channel 4)
           (CNG-4) (Cyclic nucleotide-gated cation channel
           modulatory subunit)]
          Length = 1394

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 19/70 (27%), Positives = 30/70 (42%)
 Frame = -3

Query: 266 GRPEEPRVPDGRCQDGRERRRAPREENFAGDGRRHAPEEVVGGSLDRDRKCCMGSDEEEG 87
           GR +E    + + ++GRE+      E    +GR    EE              G +EEEG
Sbjct: 390 GREKEEEEGEKKEEEGREKEEEEGGEKEDEEGREKEEEEG------------RGKEEEEG 437

Query: 86  GDEQHCERHG 57
           G+++  E  G
Sbjct: 438 GEKEEEEGRG 447

>PSIP1_CHICK (Q5XXA9) Lens epithelium-derived growth factor|
          Length = 579

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = -3

Query: 266 GRPEEPRVPDGRCQDGRERRRAPREENFAGDGRRHA-PEEVVGGSLDRDRKCCMGSDEEE 90
           G  E+P+    + ++G++    P++E    DG++ A P+      L           E+E
Sbjct: 269 GPDEKPKKQGKKDEEGQKEEEKPKKEYDKKDGKKEAEPKRKNAAKLG---SASASDSEDE 325

Query: 89  GGDEQ 75
           GG+E+
Sbjct: 326 GGEEE 330

>RU17_MOUSE (Q62376) U1 small nuclear ribonucleoprotein 70 kDa (U1 SNRNP 70|
           kDa) (snRNP70)
          Length = 448

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 24/69 (34%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
 Frame = -3

Query: 275 PHHGRPEE--PRVPDGRCQDGRERRRAPREENFAGDGRRHAPEEVVGGSLDRDRKCCMGS 102
           P  G P E  P  PDG  + GR+R R  R  + +   RR   +       DRDR+   G 
Sbjct: 339 PDDGPPGELGPEGPDGPEEKGRDRDRERRRSHRSERERRRDRDR------DRDREHKRGE 392

Query: 101 -DEEEGGDE 78
              E G DE
Sbjct: 393 RGSERGRDE 401

>RHO_STRLI (P52157) Transcription termination factor rho (EC 3.6.1.-)|
           (ATP-dependent helicase rho)
          Length = 707

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = -3

Query: 233 RCQDGRERRRAPREENFAGDGRRHAPEEVVGGSLDRDRKCCMGSDEEEGGDEQHCERHGS 54
           R + GR+RR    ++   G GR+   ++  GG  DR +        ++G D+    R G 
Sbjct: 252 RGERGRDRRNKGDDQQNQGGGRQDRQQQGGGGRQDRQQ-------HDDGYDDDGSGRRGR 304

Query: 53  R 51
           R
Sbjct: 305 R 305


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,062,090
Number of Sequences: 219361
Number of extensions: 642255
Number of successful extensions: 2693
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 2583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2688
length of database: 80,573,946
effective HSP length: 69
effective length of database: 65,438,037
effective search space used: 1570512888
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)