ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast50h05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1KLEG1_ECOLI (Q52282) Putative protein kleG 30 1.8
2PAX1_HUMAN (P15863) Paired box protein Pax-1 (HUP48) 28 7.0
3DPEP3_HUMAN (Q9H4B8) Dipeptidase 3 precursor (EC 3.4.13.19) 28 9.1

>KLEG1_ECOLI (Q52282) Putative protein kleG|
          Length = 87

 Score = 30.0 bits (66), Expect = 1.8
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 144 AAAPWPGARRGWPLLPRQ 91
           +A PWP +R GW  LPR+
Sbjct: 16  SAPPWPSSRTGWACLPRR 33



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>PAX1_HUMAN (P15863) Paired box protein Pax-1 (HUP48)|
          Length = 440

 Score = 28.1 bits (61), Expect = 7.0
 Identities = 14/26 (53%), Positives = 14/26 (53%)
 Frame = +2

Query: 65  LAPGPS*LPWRGNNGQPLLAPGHGAA 142
           LAPGP   PW    G PL  PG G A
Sbjct: 293 LAPGP---PWPPAQGPPLAPPGAGVA 315



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>DPEP3_HUMAN (Q9H4B8) Dipeptidase 3 precursor (EC 3.4.13.19)|
          Length = 488

 Score = 27.7 bits (60), Expect = 9.1
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 86  LPWRGNNGQPLLAPGHGAAA 145
           +PWR +N  P L PG  AAA
Sbjct: 459 VPWRSSNASPYLVPGLVAAA 478


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,734,215
Number of Sequences: 219361
Number of extensions: 316712
Number of successful extensions: 560
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 80,573,946
effective HSP length: 23
effective length of database: 75,528,643
effective search space used: 1812687432
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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