ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast50g03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC122816.4| Mus musculus BAC clone RP23-235N10 from chromosom... 40 0.21
2gb|AC163724.4| Mus musculus BAC clone RP23-464C19 from chromosom... 40 0.21
3dbj|AK052081.1| Mus musculus 12 days embryo eyeball cDNA, RIKEN ... 40 0.21
4emb|BX901889.4| Zebrafish DNA sequence from clone CH211-96I7 in ... 38 0.84
5gb|AC015821.9| Homo sapiens chromosome 17, clone RP11-160O5, com... 38 0.84
6gb|AC060771.8| Homo sapiens chromosome 17, clone RP11-169I9, com... 38 0.84
7emb|AL591517.8| Zebrafish DNA sequence from clone XX-204C9, comp... 38 0.84
8dbj|AK113344.1| Ciona intestinalis cDNA, clone:ciad040a04, full ... 36 3.3
9gb|AC154128.3| Tribolium castaneum BAC T.cast_C36A24 (Clemson U... 36 3.3

>gb|AC122816.4| Mus musculus BAC clone RP23-235N10 from chromosome 6, complete
            sequence
          Length = 177967

 Score = 40.1 bits (20), Expect = 0.21
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 9    gcaagaagttgttgcttcgtgttc 32
            |||||||||||||||||| |||||
Sbjct: 6284 gcaagaagttgttgcttcctgttc 6261



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>gb|AC163724.4| Mus musculus BAC clone RP23-464C19 from chromosome 6, complete sequence
          Length = 177662

 Score = 40.1 bits (20), Expect = 0.21
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 9     gcaagaagttgttgcttcgtgttc 32
             |||||||||||||||||| |||||
Sbjct: 49271 gcaagaagttgttgcttcctgttc 49294



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>dbj|AK052081.1| Mus musculus 12 days embryo eyeball cDNA, RIKEN full-length
           enriched library, clone:D230044H03
           product:unclassifiable, full insert sequence
          Length = 1179

 Score = 40.1 bits (20), Expect = 0.21
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 9   gcaagaagttgttgcttcgtgttc 32
           |||||||||||||||||| |||||
Sbjct: 778 gcaagaagttgttgcttcctgttc 801



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>emb|BX901889.4| Zebrafish DNA sequence from clone CH211-96I7 in linkage group 2, complete
              sequence
          Length = 172284

 Score = 38.2 bits (19), Expect = 0.84
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 10     caagaagttgttgcttcgt 28
              |||||||||||||||||||
Sbjct: 121206 caagaagttgttgcttcgt 121224



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>gb|AC015821.9| Homo sapiens chromosome 17, clone RP11-160O5, complete sequence
          Length = 160184

 Score = 38.2 bits (19), Expect = 0.84
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 8     ggcaagaagttgttgcttc 26
             |||||||||||||||||||
Sbjct: 39804 ggcaagaagttgttgcttc 39822



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>gb|AC060771.8| Homo sapiens chromosome 17, clone RP11-169I9, complete sequence
          Length = 138969

 Score = 38.2 bits (19), Expect = 0.84
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 8      ggcaagaagttgttgcttc 26
              |||||||||||||||||||
Sbjct: 132371 ggcaagaagttgttgcttc 132389



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>emb|AL591517.8| Zebrafish DNA sequence from clone XX-204C9, complete sequence
          Length = 110834

 Score = 38.2 bits (19), Expect = 0.84
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 10    caagaagttgttgcttcgt 28
             |||||||||||||||||||
Sbjct: 83253 caagaagttgttgcttcgt 83271



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>dbj|AK113344.1| Ciona intestinalis cDNA, clone:ciad040a04, full insert sequence
          Length = 1683

 Score = 36.2 bits (18), Expect = 3.3
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 11  aagaagttgttgcttcgt 28
           ||||||||||||||||||
Sbjct: 398 aagaagttgttgcttcgt 415



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>gb|AC154128.3| Tribolium castaneum  BAC T.cast_C36A24 (Clemson University Genomics
              Institute Tribolium castaneum BAC Library (Red Flour
              Beetle)) complete sequence
          Length = 154107

 Score = 36.2 bits (18), Expect = 3.3
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 14     aagttgttgcttcgtgtt 31
              ||||||||||||||||||
Sbjct: 111816 aagttgttgcttcgtgtt 111799


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 159,920
Number of Sequences: 3902068
Number of extensions: 159920
Number of successful extensions: 41324
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 41315
Number of HSP's gapped (non-prelim): 9
length of query: 35
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 15
effective length of database: 17,155,003,908
effective search space: 257325058620
effective search space used: 257325058620
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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