| Clone Name | bast50f11 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 81.8 bits (41), Expect = 2e-12 Identities = 123/149 (82%), Gaps = 6/149 (4%) Strand = Plus / Plus Query: 281 tcatcttccaatcccagaagaaagaagagaagcctggcctctgtcataagagatagtgat 340 |||||| ||||| | |||| |||||| || |||||||| ||||||||||| || | |||| Sbjct: 26728932 tcatctaccaatgcaagaaaaaagaaaaggagcctggcatctgtcataagcgacactgat 26728991 Query: 341 gaagaatatt---tcacgctgattgttgagccaccgctactactt---gatcagaagcac 394 || || ||| |||||||| |||| |||||||||||||| || ||||| ||| || Sbjct: 26728992 gaccaacattgtatcacgctgtttgtcgagccaccgctactcctgctcgatcataaggac 26729051 Query: 395 tggctagcagagagtgagctcatcctccc 423 |||||||||||||||||||| |||||||| Sbjct: 26729052 tggctagcagagagtgagcttatcctccc 26729080 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Plus Query: 181 agagtggctctccatctatttagaggactgcttgtctaaccctgcatcct 230 |||||||||||| ||||| |||||||||||||||| | | ||||||||| Sbjct: 26728802 agagtggctctctgtctatgtagaggactgcttgtcaacctctgcatcct 26728851
>dbj|AK101421.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033038C04, full insert sequence Length = 1452 Score = 81.8 bits (41), Expect = 2e-12 Identities = 123/149 (82%), Gaps = 6/149 (4%) Strand = Plus / Plus Query: 281 tcatcttccaatcccagaagaaagaagagaagcctggcctctgtcataagagatagtgat 340 |||||| ||||| | |||| |||||| || |||||||| ||||||||||| || | |||| Sbjct: 324 tcatctaccaatgcaagaaaaaagaaaaggagcctggcatctgtcataagcgacactgat 383 Query: 341 gaagaatatt---tcacgctgattgttgagccaccgctactactt---gatcagaagcac 394 || || ||| |||||||| |||| |||||||||||||| || ||||| ||| || Sbjct: 384 gaccaacattgtatcacgctgtttgtcgagccaccgctactcctgctcgatcataaggac 443 Query: 395 tggctagcagagagtgagctcatcctccc 423 |||||||||||||||||||| |||||||| Sbjct: 444 tggctagcagagagtgagcttatcctccc 472 Score = 67.9 bits (34), Expect = 3e-08 Identities = 81/94 (86%), Gaps = 2/94 (2%) Strand = Plus / Plus Query: 138 tgttcccccacgagcccgccacggaaagtga-agacagcagcacagagtggctctccatc 196 ||||||| ||| ||||||||||||||||||| ||| || ||| |||||||||||| || Sbjct: 151 tgttcccgcaccagcccgccacggaaagtgataga-agtggcatagagtggctctctgtc 209 Query: 197 tatttagaggactgcttgtctaaccctgcatcct 230 ||| |||||||||||||||| | | ||||||||| Sbjct: 210 tatgtagaggactgcttgtcaacctctgcatcct 243
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 81.8 bits (41), Expect = 2e-12 Identities = 123/149 (82%), Gaps = 6/149 (4%) Strand = Plus / Plus Query: 281 tcatcttccaatcccagaagaaagaagagaagcctggcctctgtcataagagatagtgat 340 |||||| ||||| | |||| |||||| || |||||||| ||||||||||| || | |||| Sbjct: 26657102 tcatctaccaatgcaagaaaaaagaaaaggagcctggcatctgtcataagcgacactgat 26657161 Query: 341 gaagaatatt---tcacgctgattgttgagccaccgctactactt---gatcagaagcac 394 || || ||| |||||||| |||| |||||||||||||| || ||||| ||| || Sbjct: 26657162 gaccaacattgtatcacgctgtttgtcgagccaccgctactcctgctcgatcataaggac 26657221 Query: 395 tggctagcagagagtgagctcatcctccc 423 |||||||||||||||||||| |||||||| Sbjct: 26657222 tggctagcagagagtgagcttatcctccc 26657250 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Plus Query: 181 agagtggctctccatctatttagaggactgcttgtctaaccctgcatcct 230 |||||||||||| ||||| |||||||||||||||| | | ||||||||| Sbjct: 26656972 agagtggctctctgtctatgtagaggactgcttgtcaacctctgcatcct 26657021
>emb|AL731889.5|CNS08C8T Oryza sativa chromosome 12, . BAC OJ1122_G07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 83015 Score = 81.8 bits (41), Expect = 2e-12 Identities = 123/149 (82%), Gaps = 6/149 (4%) Strand = Plus / Minus Query: 281 tcatcttccaatcccagaagaaagaagagaagcctggcctctgtcataagagatagtgat 340 |||||| ||||| | |||| |||||| || |||||||| ||||||||||| || | |||| Sbjct: 42190 tcatctaccaatgcaagaaaaaagaaaaggagcctggcatctgtcataagcgacactgat 42131 Query: 341 gaagaatatt---tcacgctgattgttgagccaccgctactactt---gatcagaagcac 394 || || ||| |||||||| |||| |||||||||||||| || ||||| ||| || Sbjct: 42130 gaccaacattgtatcacgctgtttgtcgagccaccgctactcctgctcgatcataaggac 42071 Query: 395 tggctagcagagagtgagctcatcctccc 423 |||||||||||||||||||| |||||||| Sbjct: 42070 tggctagcagagagtgagcttatcctccc 42042 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Minus Query: 181 agagtggctctccatctatttagaggactgcttgtctaaccctgcatcct 230 |||||||||||| ||||| |||||||||||||||| | | ||||||||| Sbjct: 42320 agagtggctctctgtctatgtagaggactgcttgtcaacctctgcatcct 42271
>emb|BX000561.2|CNS08CE7 Oryza sativa chromosome 12, . BAC OJ1014_F06 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 104849 Score = 81.8 bits (41), Expect = 2e-12 Identities = 123/149 (82%), Gaps = 6/149 (4%) Strand = Plus / Minus Query: 281 tcatcttccaatcccagaagaaagaagagaagcctggcctctgtcataagagatagtgat 340 |||||| ||||| | |||| |||||| || |||||||| ||||||||||| || | |||| Sbjct: 70046 tcatctaccaatgcaagaaaaaagaaaaggagcctggcatctgtcataagcgacactgat 69987 Query: 341 gaagaatatt---tcacgctgattgttgagccaccgctactactt---gatcagaagcac 394 || || ||| |||||||| |||| |||||||||||||| || ||||| ||| || Sbjct: 69986 gaccaacattgtatcacgctgtttgtcgagccaccgctactcctgctcgatcataaggac 69927 Query: 395 tggctagcagagagtgagctcatcctccc 423 |||||||||||||||||||| |||||||| Sbjct: 69926 tggctagcagagagtgagcttatcctccc 69898 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Minus Query: 181 agagtggctctccatctatttagaggactgcttgtctaaccctgcatcct 230 |||||||||||| ||||| |||||||||||||||| | | ||||||||| Sbjct: 70176 agagtggctctctgtctatgtagaggactgcttgtcaacctctgcatcct 70127
>gb|AC116138.21| Mus musculus chromosome 10, clone RP23-123D17, complete sequence Length = 219004 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 218 aaccctgcatcctactctgtct 239 |||||||||||||||||||||| Sbjct: 184854 aaccctgcatcctactctgtct 184875
>gb|AC158806.4| Mus musculus 10 BAC RP24-89F13 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 227508 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 218 aaccctgcatcctactctgtct 239 |||||||||||||||||||||| Sbjct: 207944 aaccctgcatcctactctgtct 207923
>dbj|BA000031.2| Vibrio parahaemolyticus RIMD 2210633 DNA, chromosome 1, complete sequence Length = 3288558 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 352 cacgctgattgttgagccaccg 373 |||||||||||||||||||||| Sbjct: 1200143 cacgctgattgttgagccaccg 1200164
>ref|XM_630285.1| Dictyostelium discoideum hypothetical protein (DDB0189292), partial mRNA Length = 882 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 334 tagtgatgaagaatatttcac 354 ||||||||||||||||||||| Sbjct: 57 tagtgatgaagaatatttcac 77
>gb|AY104292.1| Zea mays PCO099333 mRNA sequence Length = 1025 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 348 atttcacgctgattgttgagccaccgcta 376 ||||||||||| || |||||||||||||| Sbjct: 664 atttcacgctgttttttgagccaccgcta 636
>gb|AC010577.5| Drosophila melanogaster clone BACR22J20, complete sequence Length = 152661 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 155 gccacggaaagtgaagacagcagcacag 182 ||||||||||||| ||||||||||||| Sbjct: 81724 gccacggaaagtgttgacagcagcacag 81697
>gb|AC011705.11| Drosophila melanogaster clone BACR10C18, complete sequence Length = 170975 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 259 aaacccgaagctgccacatc 278 |||||||||||||||||||| Sbjct: 158424 aaacccgaagctgccacatc 158405
>gb|CP000114.1| Streptococcus agalactiae A909, complete genome Length = 2127839 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 gaagaaagaagagaagcctg 316 |||||||||||||||||||| Sbjct: 846734 gaagaaagaagagaagcctg 846715
>emb|AL357034.18| Human DNA sequence from clone RP11-560I21 on chromosome 6 Contains the 3' end of the STX7 gene for syntaxin 7, the 5' end of the MOXD1 gene for monooxygenase DBH-like 1 and two CpG islands, complete sequence Length = 127703 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 293 cccagaagaaagaagagaag 312 |||||||||||||||||||| Sbjct: 45513 cccagaagaaagaagagaag 45494
>emb|AL121929.17|HSBA416N2 Human DNA sequence from clone RP11-416N2 on chromosome 10 Contains the 3' end of the NEURL gene for neuralized-like (Drosophila), the 3' end of the SH3MD1 gene for SH3 multiple domains 1 and seven CpG islands, complete sequence Length = 203262 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 222 ctgcatcctactctgtctcc 241 |||||||||||||||||||| Sbjct: 191173 ctgcatcctactctgtctcc 191154
>gb|AE014227.1| Streptococcus agalactiae 2603V/R section 37 of 100 of the complete genome Length = 25313 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 gaagaaagaagagaagcctg 316 |||||||||||||||||||| Sbjct: 2547 gaagaaagaagagaagcctg 2528
>emb|AL766847.1|SAG766847 Streptococcus agalactiae NEM316 complete genome, segment 5 Length = 167050 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 gaagaaagaagagaagcctg 316 |||||||||||||||||||| Sbjct: 29466 gaagaaagaagagaagcctg 29447
>emb|AJ427478.2|SSC427478 Sus scrofa ASIP gene for agouti signalling protein and AHCY gene for S-adenosylhomocysteine hydrolase Length = 204138 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 258 taaacccgaagctgccacatccttcatc 285 |||||| |||||||||||||| |||||| Sbjct: 47813 taaacctgaagctgccacatctttcatc 47840
>emb|AL928857.15| Mouse DNA sequence from clone RP24-499A8 on chromosome 11 Contains the 5' end of the Gemin5 gene for gem (nuclear organelle) associated protein 5, a novel gene, a interferon gamma inducible protein (Ifi47) pseudogene, the Igtp gene for interferon gamma induced GTPase, the Gtpi-pending gene for interferon-g induced GTPase, a novel gene and one CpG island, complete sequence Length = 133633 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 300 gaaagaagagaagcctggcctctg 323 |||||||||||||||||| ||||| Sbjct: 40513 gaaagaagagaagcctggtctctg 40490
>emb|CR394564.8| Zebrafish DNA sequence from clone DKEY-1K1 in linkage group 8, complete sequence Length = 227475 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 156 ccacggaaagtgaagacagc 175 |||||||||||||||||||| Sbjct: 35420 ccacggaaagtgaagacagc 35401
>emb|BX323082.7| Zebrafish DNA sequence from clone RP71-24N4 in linkage group 8, complete sequence Length = 99221 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 ccacggaaagtgaagacagc 175 |||||||||||||||||||| Sbjct: 36630 ccacggaaagtgaagacagc 36649
>ref|NM_166822.3| Drosophila melanogaster shaven CG11049-RC, transcript variant C (sv), mRNA Length = 4082 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 155 gccacggaaagtgaagacagcagcacag 182 ||||||||||||| ||||||||||||| Sbjct: 1251 gccacggaaagtgttgacagcagcacag 1278
>ref|NM_079894.3| Drosophila melanogaster shaven CG11049-RA, transcript variant A (sv), mRNA Length = 4673 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 155 gccacggaaagtgaagacagcagcacag 182 ||||||||||||| ||||||||||||| Sbjct: 1251 gccacggaaagtgttgacagcagcacag 1278
>ref|NM_001014701.1| Drosophila melanogaster shaven CG11049-RD, transcript variant D (sv), mRNA Length = 4181 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 155 gccacggaaagtgaagacagcagcacag 182 ||||||||||||| ||||||||||||| Sbjct: 1251 gccacggaaagtgttgacagcagcacag 1278
>ref|NM_001014700.1| Drosophila melanogaster shaven CG11049-RE, transcript variant E (sv), mRNA Length = 4690 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 155 gccacggaaagtgaagacagcagcacag 182 ||||||||||||| ||||||||||||| Sbjct: 1251 gccacggaaagtgttgacagcagcacag 1278
>ref|NM_001014699.1| Drosophila melanogaster shaven CG11049-RF, transcript variant F (sv), mRNA Length = 2730 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 155 gccacggaaagtgaagacagcagcacag 182 ||||||||||||| ||||||||||||| Sbjct: 1251 gccacggaaagtgttgacagcagcacag 1278
>ref|NM_001014698.1| Drosophila melanogaster shaven CG11049-RG, transcript variant G (sv), mRNA Length = 2238 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 155 gccacggaaagtgaagacagcagcacag 182 ||||||||||||| ||||||||||||| Sbjct: 1251 gccacggaaagtgttgacagcagcacag 1278
>ref|NM_001014697.1| Drosophila melanogaster shaven CG11049-RH, transcript variant H (sv), mRNA Length = 4667 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 155 gccacggaaagtgaagacagcagcacag 182 ||||||||||||| ||||||||||||| Sbjct: 1251 gccacggaaagtgttgacagcagcacag 1278
>gb|AF016888.1|AF016888 Drosophila melanogaster paired box protein (dPax258) mRNA, partial cds Length = 2652 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 155 gccacggaaagtgaagacagcagcacag 182 ||||||||||||| ||||||||||||| Sbjct: 456 gccacggaaagtgttgacagcagcacag 483
>gb|AC008338.7|AC008338 Drosophila melanogaster, chromosome X, region 19C-19E, BAC clone BACR30J04, complete sequence Length = 177277 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 259 aaacccgaagctgccacatc 278 |||||||||||||||||||| Sbjct: 70358 aaacccgaagctgccacatc 70339
>gb|AC084684.1|CBRMM06C2 Caenorhabditis briggsae cosmid MM06C2, complete sequence Length = 27000 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 294 ccagaagaaagaagagaagc 313 |||||||||||||||||||| Sbjct: 25494 ccagaagaaagaagagaagc 25513 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 294 ccagaagaaagaagagaagc 313 |||||||||||||||||||| Sbjct: 25149 ccagaagaaagaagagaagc 25168
>gb|AE003571.4| Drosophila melanogaster chromosome X, section 68 of 74 of the complete sequence Length = 302538 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 259 aaacccgaagctgccacatc 278 |||||||||||||||||||| Sbjct: 35655 aaacccgaagctgccacatc 35636
>gb|AE003846.5| Drosophila melanogaster chromosome 4, section 5 of 5 of the complete sequence Length = 356494 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 155 gccacggaaagtgaagacagcagcacag 182 ||||||||||||| ||||||||||||| Sbjct: 201347 gccacggaaagtgttgacagcagcacag 201374
>gb|AF010256.1|AF010256 Drosophila melanogaster sparkling protein (spa) mRNA, complete cds Length = 4672 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 155 gccacggaaagtgaagacagcagcacag 182 ||||||||||||| ||||||||||||| Sbjct: 1251 gccacggaaagtgttgacagcagcacag 1278
>emb|AL806528.14| Mouse DNA sequence from clone RP23-190C17 on chromosome 2, complete sequence Length = 214642 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 220 ccctgcatcctactctgtct 239 |||||||||||||||||||| Sbjct: 30476 ccctgcatcctactctgtct 30495
>emb|AL732403.9| Mouse DNA sequence from clone RP23-119L20 on chromosome 2, complete sequence Length = 211892 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 247 acaagcatctgtaaacccga 266 |||||||||||||||||||| Sbjct: 150915 acaagcatctgtaaacccga 150934 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,517,300 Number of Sequences: 3902068 Number of extensions: 3517300 Number of successful extensions: 79198 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 36 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 79079 Number of HSP's gapped (non-prelim): 108 length of query: 423 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 401 effective length of database: 17,147,199,772 effective search space: 6876027108572 effective search space used: 6876027108572 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)