ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast50f09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC116949.11| Oryza sativa (japonica cultivar-group) chromosom... 60 6e-06
2dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 60 6e-06
3gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 60 6e-06
4dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 50 0.006
5dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.37
6dbj|AP004160.2| Oryza sativa (japonica cultivar-group) genomic D... 44 0.37
7dbj|AP004188.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.37
8gb|AC136004.10| Mus musculus chromosome 7, clone RP23-235M8, com... 42 1.5
9gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 compl... 42 1.5
10gb|AC126247.3| Mus musculus BAC clone RP24-370C15 from chromosom... 42 1.5
11gb|AC162361.7| Mus musculus chromosome 7, clone RP23-177P20, com... 42 1.5
12gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, compl... 42 1.5
13dbj|AK133252.1| Mus musculus adult male testis cDNA, RIKEN full-... 42 1.5
14gb|AC101922.12| Mus musculus chromosome 3, clone RP24-182A8, com... 42 1.5
15gb|AF232004.3| Pseudomonas syringae pv. tomato strain DC3000 Hrp... 42 1.5
16gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 42 1.5
17gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chr... 42 1.5
18gb|AC099584.8| Mus musculus chromosome 3, clone RP23-1A12, compl... 42 1.5
19gb|L27277.1|MLURHO Micrococcus luteus Rho factor (rho) gene, com... 42 1.5
20gb|CP000148.1| Geobacter metallireducens GS-15, complete genome 40 5.8
21gb|AC163612.3| Mus musculus BAC clone RP23-89N5 from chromosome ... 40 5.8
22gb|AC114679.10| Mus musculus chromosome 3, clone RP24-235E22, co... 40 5.8
23gb|AC092473.4| Homo sapiens chromosome X clone RP11-126D17 map p... 40 5.8
24ref|XM_322802.1| Neurospora crassa OR74A hypothetical protein (N... 40 5.8
25ref|XM_951731.1| Neurospora crassa OR74A hypothetical protein (N... 40 5.8
26ref|XM_957347.1| Neurospora crassa OR74A hypothetical protein (N... 40 5.8
27ref|XM_328629.1| Neurospora crassa OR74A hypothetical protein (N... 40 5.8
28gb|AC145557.3| Mus musculus BAC clone RP23-313I19 from chromosom... 40 5.8
29gb|AC165344.3| Mus musculus BAC clone RP23-390P7 from chromosome... 40 5.8
30gb|AC137967.14| Mus musculus chromosome 10, clone RP24-323I24, c... 40 5.8
31gb|AC138093.7| Mus musculus chromosome 16, clone RP24-559J21, co... 40 5.8
32ref|XM_389748.1| Gibberella zeae PH-1 chromosome 4 hypothetical ... 40 5.8
33gb|AC126024.3| Mus musculus BAC clone RP24-423I20 from chromosom... 40 5.8
34gb|AC129182.4| Mus musculus BAC clone RP23-340P24 from chromosom... 40 5.8
35gb|AC098712.3| Mus musculus BAC clone RP23-2A21 from 10, complet... 40 5.8
36gb|AC162930.5| Mus musculus BAC clone RP23-221B16 from chromosom... 40 5.8
37emb|AL139085.13| Human DNA sequence from clone RP11-431O22 on ch... 40 5.8
38emb|AL669986.1|NCB7N14 Neurospora crassa DNA linkage group II BA... 40 5.8
39emb|AL606659.3|OSJN00108 Oryza sativa genomic DNA, chromosome 4,... 40 5.8
40gb|AC100789.2| Homo sapiens chromosome X, clone RP11-907I17, com... 40 5.8
41gb|AC087886.11| Homo sapiens 12 BAC RP11-578A9 (Roswell Park Can... 40 5.8
42gb|AC092420.2| Homo sapiens chromosome 3 clone RP11-435M24, comp... 40 5.8
43dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
44gb|AC154312.2| Mus musculus BAC clone RP23-354D20 from chromosom... 40 5.8
45gb|AC016683.7| Homo sapiens BAC clone RP11-65I12 from 2, complet... 40 5.8
46gb|AC010442.7| Homo sapiens chromosome 5 clone CTD-2228K2, compl... 40 5.8
47gb|AC018359.7|AC018359 Homo sapiens 3 BAC RP11-35C18 (Roswell Pa... 40 5.8
48dbj|BS000023.1| Pan troglodytes chromosome 22 clone:PTB-018G23, ... 40 5.8
49dbj|AP001666.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 5.8
50gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, co... 40 5.8
51gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete... 40 5.8
52gb|L76606.1|SCABLAC Schistocerca americana blackjack mRNA, compl... 40 5.8
53gb|U01876.1|DRU01876 Deinococcus radiodurans R1 RecA protein (re... 40 5.8
54emb|AL731630.2|OSJN00273 Oryza sativa genomic DNA, chromosome 4,... 40 5.8
55emb|AL845542.9| Mouse DNA sequence from clone RP23-288I12 on chr... 40 5.8
56dbj|AP001346.1| Homo sapiens genomic DNA, chromosome 21q21.1-q21... 40 5.8
57dbj|AB005471.1| Deinococcus radiodurans DNA for CinA and RecA, c... 40 5.8 
>gb|AC116949.11| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0040B10 map R2918, complete sequence
          Length = 149132

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                   
Query: 4     aatgccatccccagcctacctatctcctcccttcctcc 41
             ||||||| |||||||||||||||||||| |||||||||
Sbjct: 61738 aatgccaaccccagcctacctatctccttccttcctcc 61701
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                     
Query: 4       aatgccatccccagcctacctatctcctcccttcctcc 41
               ||||||| |||||||||||||||||||| |||||||||
Sbjct: 2409641 aatgccaaccccagcctacctatctccttccttcctcc 2409604
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                     
Query: 4       aatgccatccccagcctacctatctcctcccttcctcc 41
               ||||||| |||||||||||||||||||| |||||||||
Sbjct: 2417377 aatgccaaccccagcctacctatctccttccttcctcc 2417340
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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                        
Query: 41      cccatccaccagcaggagcacgagc 65
               |||||||||||||||||||||||||
Sbjct: 4542723 cccatccaccagcaggagcacgagc 4542699
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 50       cagcaggagcacgagcacgagc 71
                ||||||||||||||||||||||
Sbjct: 27367179 cagcaggagcacgagcacgagc 27367158
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>dbj|AP004160.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1197_E09
          Length = 67368

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 50    cagcaggagcacgagcacgagc 71
             ||||||||||||||||||||||
Sbjct: 13117 cagcaggagcacgagcacgagc 13096
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>dbj|AP004188.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1493_H11
          Length = 106693

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 50    cagcaggagcacgagcacgagc 71
             ||||||||||||||||||||||
Sbjct: 82112 cagcaggagcacgagcacgagc 82091
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>gb|AC136004.10| Mus musculus chromosome 7, clone RP23-235M8, complete sequence
          Length = 185174

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 30    ctcccttcctccccatccacc 50
             |||||||||||||||||||||
Sbjct: 48727 ctcccttcctccccatccacc 48747
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>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome
          Length = 6397126

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 51      agcaggagcacgagcacgagc 71
               |||||||||||||||||||||
Sbjct: 1535234 agcaggagcacgagcacgagc 1535214
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>gb|AC126247.3| Mus musculus BAC clone RP24-370C15 from chromosome 13, complete
             sequence
          Length = 143813

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 27    ctcctcccttcctccccatcc 47
             |||||||||||||||||||||
Sbjct: 83220 ctcctcccttcctccccatcc 83240
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>gb|AC162361.7| Mus musculus chromosome 7, clone RP23-177P20, complete sequence
          Length = 230870

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 30     ctcccttcctccccatccacc 50
              |||||||||||||||||||||
Sbjct: 133167 ctcccttcctccccatccacc 133187
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>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence
          Length = 3363523

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 287    cgtcgcggccggtagcgtcct 307
              |||||||||||||||||||||
Sbjct: 712156 cgtcgcggccggtagcgtcct 712136
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>dbj|AK133252.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
           library, clone:4932423K20 product:hypothetical protein,
           full insert sequence
          Length = 2698

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 30  ctcccttcctccccatccacc 50
           |||||||||||||||||||||
Sbjct: 831 ctcccttcctccccatccacc 851
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>gb|AC101922.12| Mus musculus chromosome 3, clone RP24-182A8, complete sequence
          Length = 173400

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 180    ctccttctcctggcatcgcgg 200
              |||||||||||||||||||||
Sbjct: 118633 ctccttctcctggcatcgcgg 118613
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>gb|AF232004.3| Pseudomonas syringae pv. tomato strain DC3000 Hrp pathogenicity island,
             complete sequence
          Length = 52498

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 51    agcaggagcacgagcacgagc 71
             |||||||||||||||||||||
Sbjct: 18721 agcaggagcacgagcacgagc 18741
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 382     gcagcgtcaccggcaccttct 402
               |||||||||||||||||||||
Sbjct: 2976411 gcagcgtcaccggcaccttct 2976391
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>gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chromosome I, complete
              sequence
          Length = 4332241

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 263    gtcgctcatccgcgttctata 283
              |||||||||||||||||||||
Sbjct: 954967 gtcgctcatccgcgttctata 954947
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>gb|AC099584.8| Mus musculus chromosome 3, clone RP23-1A12, complete sequence
          Length = 217366

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 180    ctccttctcctggcatcgcgg 200
              |||||||||||||||||||||
Sbjct: 196725 ctccttctcctggcatcgcgg 196745
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>gb|L27277.1|MLURHO Micrococcus luteus Rho factor (rho) gene, complete cds
          Length = 2402

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 87   ggcggccgcaaccgtcgcagccgcc 111
            ||||||||||||||||||| |||||
Sbjct: 1098 ggcggccgcaaccgtcgcaaccgcc 1122
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>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome
          Length = 3997420

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 46     ccaccagcaggagcacgagc 65
              ||||||||||||||||||||
Sbjct: 121692 ccaccagcaggagcacgagc 121711
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>gb|AC163612.3| Mus musculus BAC clone RP23-89N5 from chromosome 16, complete sequence
          Length = 207953

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 22    cctatctcctcccttcctcc 41
             ||||||||||||||||||||
Sbjct: 82095 cctatctcctcccttcctcc 82076
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>gb|AC114679.10| Mus musculus chromosome 3, clone RP24-235E22, complete sequence
          Length = 157152

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 19     ctacctatctcctcccttcctccc 42
              ||||||||||||||||| ||||||
Sbjct: 145964 ctacctatctcctccctccctccc 145941
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>gb|AC092473.4| Homo sapiens chromosome X clone RP11-126D17 map p11.4, complete
             sequence
          Length = 138039

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 28    tcctcccttcctccccatcc 47
             ||||||||||||||||||||
Sbjct: 77668 tcctcccttcctccccatcc 77649
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>ref|XM_322802.1| Neurospora crassa OR74A hypothetical protein (NCU03545.1) partial
            mRNA
          Length = 6930

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 52   gcaggagcacgagcacgagc 71
            ||||||||||||||||||||
Sbjct: 3549 gcaggagcacgagcacgagc 3568
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>ref|XM_951731.1| Neurospora crassa OR74A hypothetical protein (NCU03545.1) partial
            mRNA
          Length = 6930

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 52   gcaggagcacgagcacgagc 71
            ||||||||||||||||||||
Sbjct: 3549 gcaggagcacgagcacgagc 3568
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>ref|XM_957347.1| Neurospora crassa OR74A hypothetical protein (NCU07924.1) partial
            mRNA
          Length = 4308

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 46   ccaccagcaggagcacgagc 65
            ||||||||||||||||||||
Sbjct: 2897 ccaccagcaggagcacgagc 2878
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>ref|XM_328629.1| Neurospora crassa OR74A hypothetical protein (NCU07924.1) partial
            mRNA
          Length = 4308

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 46   ccaccagcaggagcacgagc 65
            ||||||||||||||||||||
Sbjct: 2897 ccaccagcaggagcacgagc 2878
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>gb|AC145557.3| Mus musculus BAC clone RP23-313I19 from chromosome 19, complete sequence
          Length = 226099

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 27     ctcctcccttcctccccatc 46
              ||||||||||||||||||||
Sbjct: 173353 ctcctcccttcctccccatc 173334
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>gb|AC165344.3| Mus musculus BAC clone RP23-390P7 from chromosome 16, complete sequence
          Length = 193532

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 28     tcctcccttcctccccatcc 47
              ||||||||||||||||||||
Sbjct: 123238 tcctcccttcctccccatcc 123219
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>gb|AC137967.14| Mus musculus chromosome 10, clone RP24-323I24, complete sequence
          Length = 199669

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 131    cgtgcttcttaaagccaagg 150
              ||||||||||||||||||||
Sbjct: 119468 cgtgcttcttaaagccaagg 119487
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>gb|AC138093.7| Mus musculus chromosome 16, clone RP24-559J21, complete sequence
          Length = 123569

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 28    tcctcccttcctccccatcc 47
             ||||||||||||||||||||
Sbjct: 70756 tcctcccttcctccccatcc 70775
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>ref|XM_389748.1| Gibberella zeae PH-1 chromosome 4 hypothetical protein (FG09572.1)
           partial mRNA
          Length = 1866

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 321 gtcctcttcgcggcggccaa 340
           ||||||||||||||||||||
Sbjct: 957 gtcctcttcgcggcggccaa 938
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>gb|AC126024.3| Mus musculus BAC clone RP24-423I20 from chromosome 1, complete sequence
          Length = 177041

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 29     cctcccttcctccccatccaccag 52
              |||||| |||||||||||||||||
Sbjct: 128762 cctcccctcctccccatccaccag 128785
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>gb|AC129182.4| Mus musculus BAC clone RP23-340P24 from chromosome 19, complete
            sequence
          Length = 187601

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 27   ctcctcccttcctccccatc 46
            ||||||||||||||||||||
Sbjct: 3984 ctcctcccttcctccccatc 3965
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>gb|AC098712.3| Mus musculus BAC clone RP23-2A21 from 10, complete sequence
          Length = 205054

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 131   cgtgcttcttaaagccaagg 150
             ||||||||||||||||||||
Sbjct: 48141 cgtgcttcttaaagccaagg 48160
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>gb|AC162930.5| Mus musculus BAC clone RP23-221B16 from chromosome 8, complete sequence
          Length = 222939

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 132    gtgcttcttaaagccaaggccggc 155
              |||||||||| |||||||||||||
Sbjct: 142291 gtgcttcttatagccaaggccggc 142314
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>emb|AL139085.13| Human DNA sequence from clone RP11-431O22 on chromosome 13 Contains the
             5' end of the gene for chondromodulin I precursor (CHM-I),
             a novel gene, the PCDH8 gene for protocadherin 8 and 4 CpG
             islands, complete sequence
          Length = 173292

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 25    atctcctcccttcctcccca 44
             ||||||||||||||||||||
Sbjct: 84800 atctcctcccttcctcccca 84781
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>emb|AL669986.1|NCB7N14 Neurospora crassa DNA linkage group II BAC clone B7N14
          Length = 107947

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 52    gcaggagcacgagcacgagc 71
             ||||||||||||||||||||
Sbjct: 90605 gcaggagcacgagcacgagc 90586
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>emb|AL606659.3|OSJN00108 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0070J16,
              complete sequence
          Length = 130718

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 48     accagcaggagcacgagcacgagc 71
              ||||||| ||||||||||||||||
Sbjct: 110448 accagcacgagcacgagcacgagc 110425
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>gb|AC100789.2| Homo sapiens chromosome X, clone RP11-907I17, complete sequence
          Length = 183453

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 28     tcctcccttcctccccatcc 47
              ||||||||||||||||||||
Sbjct: 150114 tcctcccttcctccccatcc 150095
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>gb|AC087886.11| Homo sapiens 12 BAC RP11-578A9 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 191923

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 23     ctatctcctcccttcctccc 42
              ||||||||||||||||||||
Sbjct: 153450 ctatctcctcccttcctccc 153469
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>gb|AC092420.2| Homo sapiens chromosome 3 clone RP11-435M24, complete sequence
          Length = 183774

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 26     tctcctcccttcctccccat 45
              ||||||||||||||||||||
Sbjct: 135141 tctcctcccttcctccccat 135160
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 48       accagcaggagcacgagcacgagc 71
                ||||||| ||||||||||||||||
Sbjct: 25730721 accagcacgagcacgagcacgagc 25730698
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>gb|AC154312.2| Mus musculus BAC clone RP23-354D20 from chromosome 16, complete sequence
          Length = 197884

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 22     cctatctcctcccttcctcc 41
              ||||||||||||||||||||
Sbjct: 149147 cctatctcctcccttcctcc 149128
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>gb|AC016683.7| Homo sapiens BAC clone RP11-65I12 from 2, complete sequence
          Length = 179937

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 8     ccatccccagcctacctatc 27
             ||||||||||||||||||||
Sbjct: 91565 ccatccccagcctacctatc 91546
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>gb|AC010442.7| Homo sapiens chromosome 5 clone CTD-2228K2, complete sequence
          Length = 153197

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 30     ctcccttcctccccatccac 49
              ||||||||||||||||||||
Sbjct: 128888 ctcccttcctccccatccac 128869
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>gb|AC018359.7|AC018359 Homo sapiens 3 BAC RP11-35C18 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 160307

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 26    tctcctcccttcctccccat 45
             ||||||||||||||||||||
Sbjct: 75646 tctcctcccttcctccccat 75665
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>dbj|BS000023.1| Pan troglodytes chromosome 22 clone:PTB-018G23, map 22, complete
              sequences
          Length = 135513

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 25     atctcctcccttcctccccatcca 48
              ||||||||||||||||| ||||||
Sbjct: 117385 atctcctcccttcctccacatcca 117408
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>dbj|AP001666.1| Homo sapiens genomic DNA, chromosome 21q, section 10/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 25     atctcctcccttcctccccatcca 48
              ||||||||||||||||| ||||||
Sbjct: 153979 atctcctcccttcctccacatcca 154002
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>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 360     atgagccaggcggcgctcgg 379
               ||||||||||||||||||||
Sbjct: 2179111 atgagccaggcggcgctcgg 2179130
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>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence
          Length = 2648638

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 243     gcggcattccgcgtggccgc 262
               ||||||||||||||||||||
Sbjct: 2337991 gcggcattccgcgtggccgc 2338010



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 368    ggcggcgctcgggcgcagcg 387
              ||||||||||||||||||||
Sbjct: 500940 ggcggcgctcgggcgcagcg 500959
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>gb|L76606.1|SCABLAC Schistocerca americana blackjack mRNA, complete cds
          Length = 6173

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 46  ccaccagcaggagcacgagcacga 69
           ||||||||| ||||||||||||||
Sbjct: 308 ccaccagcacgagcacgagcacga 331
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>gb|U01876.1|DRU01876 Deinococcus radiodurans R1 RecA protein (recA) gene, complete cds
          Length = 1728

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 243 gcggcattccgcgtggccgc 262
           ||||||||||||||||||||
Sbjct: 595 gcggcattccgcgtggccgc 614
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>emb|AL731630.2|OSJN00273 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0072M01,
             complete sequence
          Length = 127712

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 48    accagcaggagcacgagcacgagc 71
             ||||||| ||||||||||||||||
Sbjct: 53648 accagcacgagcacgagcacgagc 53625
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>emb|AL845542.9| Mouse DNA sequence from clone RP23-288I12 on chromosome 2, complete
            sequence
          Length = 178976

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 23   ctatctcctcccttcctccc 42
            ||||||||||||||||||||
Sbjct: 6116 ctatctcctcccttcctccc 6097
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>dbj|AP001346.1| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2 clone:B783C3,
             LL56-APP region, complete sequence
          Length = 124587

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 25    atctcctcccttcctccccatcca 48
             ||||||||||||||||| ||||||
Sbjct: 76256 atctcctcccttcctccacatcca 76279
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>dbj|AB005471.1| Deinococcus radiodurans DNA for CinA and RecA, complete cds
          Length = 4451

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 243  gcggcattccgcgtggccgc 262
            ||||||||||||||||||||
Sbjct: 2404 gcggcattccgcgtggccgc 2423


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,869,457
Number of Sequences: 3902068
Number of extensions: 2869457
Number of successful extensions: 91986
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 91250
Number of HSP's gapped (non-prelim): 733
length of query: 432
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 410
effective length of database: 17,147,199,772
effective search space: 7030351906520
effective search space used: 7030351906520
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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