ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast50f01 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK109420.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-305-D07, full insert sequence Length = 1257 Score = 127 bits (64), Expect = 3e-26 Identities = 235/292 (80%) Strand = Plus / Plus Query: 122 cgcagccgcttgtgccaggggtcttcacgttcggcgactcgacggtcgacataggcaaca 181 |||||||||| ||||| | ||| | |||||||| ||||| |||| ||| |||| |||| Sbjct: 138 cgcagccgctcgtgccggccgtcatgacgttcggtgactcatcggtggacgtaggtaaca 197 Query: 182 acgactacctccacaccctcatcaaggcggacttccctccctacggcagggacttcccca 241 | ||||||||| | ||| |||||||||| |||||||||||||||| ||||||||| | Sbjct: 198 atgactacctcaaaaccatcatcaaggcaaacttccctccctacggaagggacttcaaga 257 Query: 242 atcgcgtggccaccgggaggttttgcaacggcaagctggccaccgacatcactgctgata 301 | | || |||| |||||||| ||||||||||||||||| || || |||||||| || | Sbjct: 258 accaggtacccacggggaggttctgcaacggcaagctggctactgatatcactgccgaga 317 Query: 302 cacttgggttcacaagctacccgccggcatatctcagcccgcaggcgtcggggaagaacc 361 | | ||||| ||||||| | || || ||||||||||| | ||||| |||||||||| Sbjct: 318 cgttggggtttgaaagctacgcacctgcgtatctcagcccagatgcgtcagggaagaacc 377 Query: 362 ttctgatcggtgccaacttcgcgtcggctggatccggctactacgatcacac 413 ||||||| || |||||||| || || || ||||| |||||||| || ||||| Sbjct: 378 ttctgattggagccaactttgcatctgcaggatctggctactatgaccacac 429
>dbj|AK073593.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046C23, full insert sequence Length = 1246 Score = 127 bits (64), Expect = 3e-26 Identities = 235/292 (80%) Strand = Plus / Plus Query: 122 cgcagccgcttgtgccaggggtcttcacgttcggcgactcgacggtcgacataggcaaca 181 |||||||||| ||||| | ||| | |||||||| ||||| |||| ||| |||| |||| Sbjct: 124 cgcagccgctcgtgccggccgtcatgacgttcggtgactcatcggtggacgtaggtaaca 183 Query: 182 acgactacctccacaccctcatcaaggcggacttccctccctacggcagggacttcccca 241 | ||||||||| | ||| |||||||||| |||||||||||||||| ||||||||| | Sbjct: 184 atgactacctcaaaaccatcatcaaggcaaacttccctccctacggaagggacttcaaga 243 Query: 242 atcgcgtggccaccgggaggttttgcaacggcaagctggccaccgacatcactgctgata 301 | | || |||| |||||||| ||||||||||||||||| || || |||||||| || | Sbjct: 244 accaggtacccacggggaggttctgcaacggcaagctggctactgatatcactgccgaga 303 Query: 302 cacttgggttcacaagctacccgccggcatatctcagcccgcaggcgtcggggaagaacc 361 | | ||||| ||||||| | || || ||||||||||| | ||||| |||||||||| Sbjct: 304 cgttggggtttgaaagctacgcacctgcgtatctcagcccagatgcgtcagggaagaacc 363 Query: 362 ttctgatcggtgccaacttcgcgtcggctggatccggctactacgatcacac 413 ||||||| || |||||||| || || || ||||| |||||||| || ||||| Sbjct: 364 ttctgattggagccaactttgcatctgcaggatctggctactatgaccacac 415
>dbj|AK060175.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-312-A01, full insert sequence Length = 1353 Score = 127 bits (64), Expect = 3e-26 Identities = 235/292 (80%) Strand = Plus / Plus Query: 122 cgcagccgcttgtgccaggggtcttcacgttcggcgactcgacggtcgacataggcaaca 181 |||||||||| ||||| | ||| | |||||||| ||||| |||| ||| |||| |||| Sbjct: 119 cgcagccgctcgtgccggccgtcatgacgttcggtgactcatcggtggacgtaggtaaca 178 Query: 182 acgactacctccacaccctcatcaaggcggacttccctccctacggcagggacttcccca 241 | ||||||||| | ||| |||||||||| |||||||||||||||| ||||||||| | Sbjct: 179 atgactacctcaaaaccatcatcaaggcaaacttccctccctacggaagggacttcaaga 238 Query: 242 atcgcgtggccaccgggaggttttgcaacggcaagctggccaccgacatcactgctgata 301 | | || |||| |||||||| ||||||||||||||||| || || |||||||| || | Sbjct: 239 accaggtacccacggggaggttctgcaacggcaagctggctactgatatcactgccgaga 298 Query: 302 cacttgggttcacaagctacccgccggcatatctcagcccgcaggcgtcggggaagaacc 361 | | ||||| ||||||| | || || ||||||||||| | ||||| |||||||||| Sbjct: 299 cgttggggtttgaaagctacgcacctgcgtatctcagcccagatgcgtcagggaagaacc 358 Query: 362 ttctgatcggtgccaacttcgcgtcggctggatccggctactacgatcacac 413 ||||||| || |||||||| || || || ||||| |||||||| || ||||| Sbjct: 359 ttctgattggagccaactttgcatctgcaggatctggctactatgaccacac 410
>gb|AY194234.1| Oryza sativa (japonica cultivar-group) putative lipase (LIP1) gene, complete cds Length = 2664 Score = 91.7 bits (46), Expect = 2e-15 Identities = 142/174 (81%) Strand = Plus / Plus Query: 122 cgcagccgcttgtgccaggggtcttcacgttcggcgactcgacggtcgacataggcaaca 181 |||||||||| ||||| | ||| | |||||||| ||||| |||| ||| |||| |||| Sbjct: 832 cgcagccgctcgtgccggccgtcatgacgttcggtgactcatcggtggacgtaggtaaca 891 Query: 182 acgactacctccacaccctcatcaaggcggacttccctccctacggcagggacttcccca 241 | ||||||||| | ||| |||||||||| |||||||||||||||| ||||||||| | Sbjct: 892 atgactacctcaaaaccatcatcaaggcaaacttccctccctacggaagggacttcaaga 951 Query: 242 atcgcgtggccaccgggaggttttgcaacggcaagctggccaccgacatcactg 295 | | || |||| |||||||| ||||||||||||||||| || || ||||||| Sbjct: 952 accaggtacccacggggaggttctgcaacggcaagctggctactgatatcactg 1005 Score = 61.9 bits (31), Expect = 2e-06 Identities = 70/83 (84%) Strand = Plus / Plus Query: 331 tatctcagcccgcaggcgtcggggaagaaccttctgatcggtgccaacttcgcgtcggct 390 ||||||||||| | ||||| ||||||||||||||||| || |||||||| || || || Sbjct: 1146 tatctcagcccagatgcgtcagggaagaaccttctgattggagccaactttgcatctgca 1205 Query: 391 ggatccggctactacgatcacac 413 ||||| |||||||| || ||||| Sbjct: 1206 ggatctggctactatgaccacac 1228
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 91.7 bits (46), Expect = 2e-15 Identities = 142/174 (81%) Strand = Plus / Plus Query: 122 cgcagccgcttgtgccaggggtcttcacgttcggcgactcgacggtcgacataggcaaca 181 |||||||||| ||||| | ||| | |||||||| ||||| |||| ||| |||| |||| Sbjct: 2514895 cgcagccgctcgtgccggccgtcatgacgttcggtgactcatcggtggacgtaggtaaca 2514954 Query: 182 acgactacctccacaccctcatcaaggcggacttccctccctacggcagggacttcccca 241 | ||||||||| | ||| |||||||||| |||||||||||||||| ||||||||| | Sbjct: 2514955 atgactacctcaaaaccatcatcaaggcaaacttccctccctacggaagggacttcaaga 2515014 Query: 242 atcgcgtggccaccgggaggttttgcaacggcaagctggccaccgacatcactg 295 | | || |||| |||||||| ||||||||||||||||| || || ||||||| Sbjct: 2515015 accaggtacccacggggaggttctgcaacggcaagctggctactgatatcactg 2515068 Score = 61.9 bits (31), Expect = 2e-06 Identities = 70/83 (84%) Strand = Plus / Plus Query: 331 tatctcagcccgcaggcgtcggggaagaaccttctgatcggtgccaacttcgcgtcggct 390 ||||||||||| | ||||| ||||||||||||||||| || |||||||| || || || Sbjct: 2515209 tatctcagcccagatgcgtcagggaagaaccttctgattggagccaactttgcatctgca 2515268 Query: 391 ggatccggctactacgatcacac 413 ||||| |||||||| || ||||| Sbjct: 2515269 ggatctggctactatgaccacac 2515291
>dbj|AP003767.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0036F10 Length = 149415 Score = 91.7 bits (46), Expect = 2e-15 Identities = 142/174 (81%) Strand = Plus / Plus Query: 122 cgcagccgcttgtgccaggggtcttcacgttcggcgactcgacggtcgacataggcaaca 181 |||||||||| ||||| | ||| | |||||||| ||||| |||| ||| |||| |||| Sbjct: 146353 cgcagccgctcgtgccggccgtcatgacgttcggtgactcatcggtggacgtaggtaaca 146412 Query: 182 acgactacctccacaccctcatcaaggcggacttccctccctacggcagggacttcccca 241 | ||||||||| | ||| |||||||||| |||||||||||||||| ||||||||| | Sbjct: 146413 atgactacctcaaaaccatcatcaaggcaaacttccctccctacggaagggacttcaaga 146472 Query: 242 atcgcgtggccaccgggaggttttgcaacggcaagctggccaccgacatcactg 295 | | || |||| |||||||| ||||||||||||||||| || || ||||||| Sbjct: 146473 accaggtacccacggggaggttctgcaacggcaagctggctactgatatcactg 146526 Score = 61.9 bits (31), Expect = 2e-06 Identities = 70/83 (84%) Strand = Plus / Plus Query: 331 tatctcagcccgcaggcgtcggggaagaaccttctgatcggtgccaacttcgcgtcggct 390 ||||||||||| | ||||| ||||||||||||||||| || |||||||| || || || Sbjct: 146667 tatctcagcccagatgcgtcagggaagaaccttctgattggagccaactttgcatctgca 146726 Query: 391 ggatccggctactacgatcacac 413 ||||| |||||||| || ||||| Sbjct: 146727 ggatctggctactatgaccacac 146749
>dbj|AP003632.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0624B04 Length = 72745 Score = 91.7 bits (46), Expect = 2e-15 Identities = 142/174 (81%) Strand = Plus / Plus Query: 122 cgcagccgcttgtgccaggggtcttcacgttcggcgactcgacggtcgacataggcaaca 181 |||||||||| ||||| | ||| | |||||||| ||||| |||| ||| |||| |||| Sbjct: 14097 cgcagccgctcgtgccggccgtcatgacgttcggtgactcatcggtggacgtaggtaaca 14156 Query: 182 acgactacctccacaccctcatcaaggcggacttccctccctacggcagggacttcccca 241 | ||||||||| | ||| |||||||||| |||||||||||||||| ||||||||| | Sbjct: 14157 atgactacctcaaaaccatcatcaaggcaaacttccctccctacggaagggacttcaaga 14216 Query: 242 atcgcgtggccaccgggaggttttgcaacggcaagctggccaccgacatcactg 295 | | || |||| |||||||| ||||||||||||||||| || || ||||||| Sbjct: 14217 accaggtacccacggggaggttctgcaacggcaagctggctactgatatcactg 14270 Score = 61.9 bits (31), Expect = 2e-06 Identities = 70/83 (84%) Strand = Plus / Plus Query: 331 tatctcagcccgcaggcgtcggggaagaaccttctgatcggtgccaacttcgcgtcggct 390 ||||||||||| | ||||| ||||||||||||||||| || |||||||| || || || Sbjct: 14411 tatctcagcccagatgcgtcagggaagaaccttctgattggagccaactttgcatctgca 14470 Query: 391 ggatccggctactacgatcacac 413 ||||| |||||||| || ||||| Sbjct: 14471 ggatctggctactatgaccacac 14493
>ref|XM_464399.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1134 Score = 54.0 bits (27), Expect = 4e-04 Identities = 66/79 (83%) Strand = Plus / Plus Query: 150 gttcggcgactcgacggtcgacataggcaacaacgactacctccacaccctcatcaaggc 209 |||||||||||| |||||||||| ||||||||| |||||||| ||| ||| ||| | Sbjct: 123 gttcggcgactccacggtcgacacgggcaacaacaactacctctccacgctcgtcaggag 182 Query: 210 ggacttccctccctacggc 228 |||||| ||||||||||| Sbjct: 183 cgacttcgctccctacggc 201
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 54.0 bits (27), Expect = 4e-04 Identities = 45/51 (88%) Strand = Plus / Minus Query: 141 ggtcttcacgttcggcgactcgacggtcgacataggcaacaacgactacct 191 ||||||| |||||||||||||||||| ||| | ||||||||| ||||||| Sbjct: 27176391 ggtcttcgtgttcggcgactcgacggttgacgtgggcaacaacaactacct 27176341 Score = 54.0 bits (27), Expect = 4e-04 Identities = 66/79 (83%) Strand = Plus / Plus Query: 150 gttcggcgactcgacggtcgacataggcaacaacgactacctccacaccctcatcaaggc 209 |||||||||||| |||||||||| ||||||||| |||||||| ||| ||| ||| | Sbjct: 4942894 gttcggcgactccacggtcgacacgggcaacaacaactacctctccacgctcgtcaggag 4942953 Query: 210 ggacttccctccctacggc 228 |||||| ||||||||||| Sbjct: 4942954 cgacttcgctccctacggc 4942972 Score = 46.1 bits (23), Expect = 0.096 Identities = 32/35 (91%) Strand = Plus / Plus Query: 194 acaccctcatcaaggcggacttccctccctacggc 228 ||||| |||||||||| ||||||||||||||||| Sbjct: 78386 acaccatcatcaaggccaacttccctccctacggc 78420 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 150 gttcggcgactcgacggtcgac 171 |||||||||||||||||||||| Sbjct: 1046363 gttcggcgactcgacggtcgac 1046384
>dbj|AP005849.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0031B09 Length = 132729 Score = 54.0 bits (27), Expect = 4e-04 Identities = 66/79 (83%) Strand = Plus / Plus Query: 150 gttcggcgactcgacggtcgacataggcaacaacgactacctccacaccctcatcaaggc 209 |||||||||||| |||||||||| ||||||||| |||||||| ||| ||| ||| | Sbjct: 14020 gttcggcgactccacggtcgacacgggcaacaacaactacctctccacgctcgtcaggag 14079 Query: 210 ggacttccctccctacggc 228 |||||| ||||||||||| Sbjct: 14080 cgacttcgctccctacggc 14098
>dbj|AP004858.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1725_H08 Length = 155431 Score = 54.0 bits (27), Expect = 4e-04 Identities = 45/51 (88%) Strand = Plus / Minus Query: 141 ggtcttcacgttcggcgactcgacggtcgacataggcaacaacgactacct 191 ||||||| |||||||||||||||||| ||| | ||||||||| ||||||| Sbjct: 72840 ggtcttcgtgttcggcgactcgacggttgacgtgggcaacaacaactacct 72790
>dbj|AP005055.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0684A08 Length = 137841 Score = 54.0 bits (27), Expect = 4e-04 Identities = 45/51 (88%) Strand = Plus / Minus Query: 141 ggtcttcacgttcggcgactcgacggtcgacataggcaacaacgactacct 191 ||||||| |||||||||||||||||| ||| | ||||||||| ||||||| Sbjct: 27062 ggtcttcgtgttcggcgactcgacggttgacgtgggcaacaacaactacct 27012
>dbj|AP004046.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1145_F01 Length = 113755 Score = 54.0 bits (27), Expect = 4e-04 Identities = 66/79 (83%) Strand = Plus / Plus Query: 150 gttcggcgactcgacggtcgacataggcaacaacgactacctccacaccctcatcaaggc 209 |||||||||||| |||||||||| ||||||||| |||||||| ||| ||| ||| | Sbjct: 87633 gttcggcgactccacggtcgacacgggcaacaacaactacctctccacgctcgtcaggag 87692 Query: 210 ggacttccctccctacggc 228 |||||| ||||||||||| Sbjct: 87693 cgacttcgctccctacggc 87711
>dbj|AK108567.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-145-C12, full insert sequence Length = 1426 Score = 54.0 bits (27), Expect = 4e-04 Identities = 66/79 (83%) Strand = Plus / Plus Query: 150 gttcggcgactcgacggtcgacataggcaacaacgactacctccacaccctcatcaaggc 209 |||||||||||| |||||||||| ||||||||| |||||||| ||| ||| ||| | Sbjct: 136 gttcggcgactccacggtcgacacgggcaacaacaactacctctccacgctcgtcaggag 195 Query: 210 ggacttccctccctacggc 228 |||||| ||||||||||| Sbjct: 196 cgacttcgctccctacggc 214
>ref|XM_463778.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1074 Score = 46.1 bits (23), Expect = 0.096 Identities = 32/35 (91%) Strand = Plus / Plus Query: 194 acaccctcatcaaggcggacttccctccctacggc 228 ||||| |||||||||| ||||||||||||||||| Sbjct: 149 acaccatcatcaaggccaacttccctccctacggc 183
>dbj|AP005873.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1370C05 Length = 148271 Score = 46.1 bits (23), Expect = 0.096 Identities = 32/35 (91%) Strand = Plus / Plus Query: 194 acaccctcatcaaggcggacttccctccctacggc 228 ||||| |||||||||| ||||||||||||||||| Sbjct: 72995 acaccatcatcaaggccaacttccctccctacggc 73029
>dbj|AP004187.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1435_F07 Length = 139041 Score = 46.1 bits (23), Expect = 0.096 Identities = 32/35 (91%) Strand = Plus / Plus Query: 194 acaccctcatcaaggcggacttccctccctacggc 228 ||||| |||||||||| ||||||||||||||||| Sbjct: 27413 acaccatcatcaaggccaacttccctccctacggc 27447
>ref|XM_463902.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1137 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 150 gttcggcgactcgacggtcgac 171 |||||||||||||||||||||| Sbjct: 117 gttcggcgactcgacggtcgac 138
>ref|XM_469323.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1438 Score = 44.1 bits (22), Expect = 0.38 Identities = 34/38 (89%) Strand = Plus / Plus Query: 251 ccaccgggaggttttgcaacggcaagctggccaccgac 288 |||| ||| |||| |||||||| ||||||||||||||| Sbjct: 275 ccacggggcggttctgcaacgggaagctggccaccgac 312
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 44.1 bits (22), Expect = 0.38 Identities = 34/38 (89%) Strand = Plus / Plus Query: 251 ccaccgggaggttttgcaacggcaagctggccaccgac 288 |||| ||| |||| |||||||| ||||||||||||||| Sbjct: 26960864 ccacggggcggttctgcaacgggaagctggccaccgac 26960901
>gb|AC087412.14| Oryza sativa chromosome 3 BAC OSJNBb0070O09 genomic sequence, complete sequence Length = 149303 Score = 44.1 bits (22), Expect = 0.38 Identities = 34/38 (89%) Strand = Plus / Plus Query: 251 ccaccgggaggttttgcaacggcaagctggccaccgac 288 |||| ||| |||| |||||||| ||||||||||||||| Sbjct: 139864 ccacggggcggttctgcaacgggaagctggccaccgac 139901
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 44.1 bits (22), Expect = 0.38 Identities = 34/38 (89%) Strand = Plus / Plus Query: 251 ccaccgggaggttttgcaacggcaagctggccaccgac 288 |||| ||| |||| |||||||| ||||||||||||||| Sbjct: 27052187 ccacggggcggttctgcaacgggaagctggccaccgac 27052224
>gb|AC087851.4|AC087851 Oryza sativa chromosome 3 BAC OSJNBb0072E24 genomic sequence, complete sequence Length = 111882 Score = 44.1 bits (22), Expect = 0.38 Identities = 34/38 (89%) Strand = Plus / Minus Query: 251 ccaccgggaggttttgcaacggcaagctggccaccgac 288 |||| ||| |||| |||||||| ||||||||||||||| Sbjct: 98535 ccacggggcggttctgcaacgggaagctggccaccgac 98498
>dbj|AP005851.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0088N06 Length = 123454 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 150 gttcggcgactcgacggtcgac 171 |||||||||||||||||||||| Sbjct: 35071 gttcggcgactcgacggtcgac 35092
>dbj|AP004084.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1217_F02 Length = 118822 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 150 gttcggcgactcgacggtcgac 171 |||||||||||||||||||||| Sbjct: 117782 gttcggcgactcgacggtcgac 117803
>dbj|AK099266.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023013F22, full insert sequence Length = 1508 Score = 44.1 bits (22), Expect = 0.38 Identities = 34/38 (89%) Strand = Plus / Plus Query: 251 ccaccgggaggttttgcaacggcaagctggccaccgac 288 |||| ||| |||| |||||||| ||||||||||||||| Sbjct: 288 ccacggggcggttctgcaacgggaagctggccaccgac 325
>dbj|AK060516.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-020-A02, full insert sequence Length = 1482 Score = 44.1 bits (22), Expect = 0.38 Identities = 34/38 (89%) Strand = Plus / Plus Query: 251 ccaccgggaggttttgcaacggcaagctggccaccgac 288 |||| ||| |||| |||||||| ||||||||||||||| Sbjct: 287 ccacggggcggttctgcaacgggaagctggccaccgac 324
>ref|NM_194799.1| Oryza sativa (japonica cultivar-group) putative proline-rich protein (OSJNBa0029P06.17), mRNA Length = 351 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 212 acttccctccctacggcagggacttcccc 240 ||||||||||||||||| | ||||||||| Sbjct: 188 acttccctccctacggccgagacttcccc 216 Score = 42.1 bits (21), Expect = 1.5 Identities = 39/45 (86%) Strand = Plus / Plus Query: 149 cgttcggcgactcgacggtcgacataggcaacaacgactacctcc 193 ||||||||||||||| || |||| ||||||||| ||||||||| Sbjct: 125 cgttcggcgactcgatcgtggacacgggcaacaacaactacctcc 169
>gb|AC112513.1| Oryza sativa chromosome 10 clone OSJNAa0029P06, complete sequence Length = 122319 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 212 acttccctccctacggcagggacttcccc 240 ||||||||||||||||| | ||||||||| Sbjct: 37014 acttccctccctacggccgagacttcccc 37042 Score = 42.1 bits (21), Expect = 1.5 Identities = 39/45 (86%) Strand = Plus / Plus Query: 149 cgttcggcgactcgacggtcgacataggcaacaacgactacctcc 193 ||||||||||||||| || |||| ||||||||| ||||||||| Sbjct: 36951 cgttcggcgactcgatcgtggacacgggcaacaacaactacctcc 36995
>gb|AC090873.4| Oryza sativa chromosome 10 clone OSJNBa0029P06, complete sequence Length = 151533 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 212 acttccctccctacggcagggacttcccc 240 ||||||||||||||||| | ||||||||| Sbjct: 128547 acttccctccctacggccgagacttcccc 128575 Score = 42.1 bits (21), Expect = 1.5 Identities = 39/45 (86%) Strand = Plus / Plus Query: 149 cgttcggcgactcgacggtcgacataggcaacaacgactacctcc 193 ||||||||||||||| || |||| ||||||||| ||||||||| Sbjct: 128484 cgttcggcgactcgatcgtggacacgggcaacaacaactacctcc 128528
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 212 acttccctccctacggcagggacttcccc 240 ||||||||||||||||| | ||||||||| Sbjct: 2471815 acttccctccctacggccgagacttcccc 2471843 Score = 42.1 bits (21), Expect = 1.5 Identities = 39/45 (86%) Strand = Plus / Plus Query: 149 cgttcggcgactcgacggtcgacataggcaacaacgactacctcc 193 ||||||||||||||| || |||| ||||||||| ||||||||| Sbjct: 2471752 cgttcggcgactcgatcgtggacacgggcaacaacaactacctcc 2471796
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 42.1 bits (21), Expect = 1.5 Identities = 42/49 (85%) Strand = Plus / Plus Query: 150 gttcggcgactcgacggtcgacataggcaacaacgactacctccacacc 198 |||||| ||||||||||||||| ||||||||| ||||| ||| |||| Sbjct: 2405757 gttcggggactcgacggtcgacgccggcaacaacaactacatcctcacc 2405805
>dbj|AP005894.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0095O23 Length = 159792 Score = 42.1 bits (21), Expect = 1.5 Identities = 42/49 (85%) Strand = Plus / Plus Query: 150 gttcggcgactcgacggtcgacataggcaacaacgactacctccacacc 198 |||||| ||||||||||||||| ||||||||| ||||| ||| |||| Sbjct: 84167 gttcggggactcgacggtcgacgccggcaacaacaactacatcctcacc 84215
>dbj|AK100609.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023107L07, full insert sequence Length = 1299 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 212 acttccctccctacggcagggacttcccc 240 ||||||||||||||||| | ||||||||| Sbjct: 219 acttccctccctacggccgagacttcccc 247 Score = 42.1 bits (21), Expect = 1.5 Identities = 39/45 (86%) Strand = Plus / Plus Query: 149 cgttcggcgactcgacggtcgacataggcaacaacgactacctcc 193 ||||||||||||||| || |||| ||||||||| ||||||||| Sbjct: 156 cgttcggcgactcgatcgtggacacgggcaacaacaactacctcc 200
>dbj|AK061026.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-204-F09, full insert sequence Length = 1248 Score = 42.1 bits (21), Expect = 1.5 Identities = 42/49 (85%) Strand = Plus / Plus Query: 150 gttcggcgactcgacggtcgacataggcaacaacgactacctccacacc 198 |||||| ||||||||||||||| ||||||||| ||||| ||| |||| Sbjct: 126 gttcggggactcgacggtcgacgccggcaacaacaactacatcctcacc 174
>dbj|AK060124.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-H03, full insert sequence Length = 1077 Score = 42.1 bits (21), Expect = 1.5 Identities = 42/49 (85%) Strand = Plus / Plus Query: 150 gttcggcgactcgacggtcgacataggcaacaacgactacctccacacc 198 |||||| ||||||||||||||| ||||||||| ||||| ||| |||| Sbjct: 126 gttcggggactcgacggtcgacgccggcaacaacaactacatcctcacc 174
>gb|AE000666.1| Methanothermobacter thermautotrophicus str. Delta H, complete genome Length = 1751377 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 129 gcttgtgccaggggtcttcac 149 ||||||||||||||||||||| Sbjct: 113031 gcttgtgccaggggtcttcac 113011
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 212 acttccctccctacggcagggacttcccc 240 ||||||||||||||||| | ||||||||| Sbjct: 2471766 acttccctccctacggccgagacttcccc 2471794 Score = 42.1 bits (21), Expect = 1.5 Identities = 39/45 (86%) Strand = Plus / Plus Query: 149 cgttcggcgactcgacggtcgacataggcaacaacgactacctcc 193 ||||||||||||||| || |||| ||||||||| ||||||||| Sbjct: 2471703 cgttcggcgactcgatcgtggacacgggcaacaacaactacctcc 2471747
>gb|BT023958.1| Drosophila melanogaster AT09939 full insert cDNA Length = 2380 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 ggtgcctgttgctcctggct 87 |||||||||||||||||||| Sbjct: 1532 ggtgcctgttgctcctggct 1513
>gb|AC016792.5| Drosophila melanogaster clone BACR26A02, complete sequence Length = 164971 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 ggtgcctgttgctcctggct 87 |||||||||||||||||||| Sbjct: 108245 ggtgcctgttgctcctggct 108226
>gb|AC147099.2| Pan troglodytes BAC clone RP43-50K9 from 7, complete sequence Length = 170612 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 atcaagagcttgtcttgatt 49 |||||||||||||||||||| Sbjct: 33385 atcaagagcttgtcttgatt 33404
>gb|AC119420.12| Mus musculus strain 129S6/SvEvTac clone rp22-121i21 map 11, complete sequence Length = 168186 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 ctcctccaaagataatcaga 23 |||||||||||||||||||| Sbjct: 43667 ctcctccaaagataatcaga 43648
>emb|AL611937.6| Mouse DNA sequence from clone RP23-221M24 on chromosome 11 Contains the genes for olfactory receptors MOR255-2, -1 and -6, a novel KRAB box containing protein, a high mobility group box 1 (Hmgb1) pseudogene and a olfactory receptor MOR255 pseudogene, complete sequence Length = 109397 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 ctcctccaaagataatcaga 23 |||||||||||||||||||| Sbjct: 62204 ctcctccaaagataatcaga 62223
>ref|NM_169580.1| Drosophila melanogaster NK7.1 CG8524-RB, transcript variant B (NK7.1), mRNA Length = 2379 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 ggtgcctgttgctcctggct 87 |||||||||||||||||||| Sbjct: 1535 ggtgcctgttgctcctggct 1516
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 271 ggcaagctggccaccgacat 290 |||||||||||||||||||| Sbjct: 1696239 ggcaagctggccaccgacat 1696220
>ref|NM_142100.2| Drosophila melanogaster NK7.1 CG8524-RA, transcript variant A (NK7.1), mRNA Length = 2685 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 ggtgcctgttgctcctggct 87 |||||||||||||||||||| Sbjct: 1841 ggtgcctgttgctcctggct 1822
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 279 ggccaccgacatcactgctg 298 |||||||||||||||||||| Sbjct: 2847167 ggccaccgacatcactgctg 2847148
>dbj|AP005740.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0015A04 Length = 152058 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 279 ggccaccgacatcactgctg 298 |||||||||||||||||||| Sbjct: 110316 ggccaccgacatcactgctg 110297
>dbj|AP004461.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0443G08 Length = 162139 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 279 ggccaccgacatcactgctg 298 |||||||||||||||||||| Sbjct: 20229 ggccaccgacatcactgctg 20210
>gb|AE003704.3| Drosophila melanogaster chromosome 3R, section 42 of 118 of the complete sequence Length = 220679 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 ggtgcctgttgctcctggct 87 |||||||||||||||||||| Sbjct: 70875 ggtgcctgttgctcctggct 70894
>emb|CR855318.9| Zebrafish DNA sequence from clone DKEY-239I15 in linkage group 16, complete sequence Length = 150812 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 ctcctccaaagataatcaga 23 |||||||||||||||||||| Sbjct: 10486 ctcctccaaagataatcaga 10505
>gb|AF054614.1|AF054614 Drosophila melanogaster homeobox protein NK7.1 (NK7.1) mRNA, complete cds Length = 2686 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 ggtgcctgttgctcctggct 87 |||||||||||||||||||| Sbjct: 1842 ggtgcctgttgctcctggct 1823 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,521,537 Number of Sequences: 3902068 Number of extensions: 2521537 Number of successful extensions: 41718 Number of sequences better than 10.0: 52 Number of HSP's better than 10.0 without gapping: 53 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 41491 Number of HSP's gapped (non-prelim): 224 length of query: 441 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 419 effective length of database: 17,147,199,772 effective search space: 7184676704468 effective search space used: 7184676704468 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
