>L_VSVJH (P13615) Large structural protein (L protein) (Transcriptase)|
            (Replicase) [Includes: RNA-directed RNA polymerase (EC
            2.7.7.48); mRNA (guanine-N(7)-)-methyltransferase (EC
            2.1.1.56); mRNA guanylyltransferase (EC 2.7.7.-)]
          Length = 2109

 Score = 32.3 bits (72), Expect = 0.59
 Identities = 32/122 (26%), Positives = 47/122 (38%), Gaps = 3/122 (2%)
 Frame = -1

Query: 414  HPIPWHGSPKQPSHPTYLKXENRSRTLRPQCL*SLALPDRTRNGLQLS*GKLRRESAT-- 241
            HP+  HGSP +  +P  L   +    +   C   +      R  L    G    ES +  
Sbjct: 1105 HPLEMHGSPSKKENPCQLCNSSGLTYISVHCPKGITDVFNRRGPLPAYLGSNTSESTSIL 1164

Query: 240  -RWFD*SFAPIPKSDERFARQYRFEPPPEFPLASPRSGIVHHLSGPDRRAPTRTLHRRSG 64
              W   S  PI K   R      +  PPE PL++     +  L+G D  +      +R+G
Sbjct: 1165 QPWEKESKIPIIKRATRLRDAISWFIPPESPLSTCILNNIRALTGEDWSSKQHGF-KRTG 1223

Query: 63   SA 58
            SA
Sbjct: 1224 SA 1225

>WDR43_HUMAN (Q15061) WD-repeat protein 43|
          Length = 720

 Score = 32.3 bits (72), Expect = 0.59
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = -3

Query: 184 SVSLRASTRVSSGFAPLRHSSPSFGSRQACSNSNPSQKIRVGQRCGP*GPPARQLPCA 11
           ++ LR    V  G AP R  +P+ G  + CS +  +     G  C P  P    +PCA
Sbjct: 8   ALQLRDCACVGEGAAPPRAGAPAHGRTRGCSGARAAMAAGGGGSCDPLAPAG--VPCA 63

>TTC15_HUMAN (Q8WVT3) Tetratricopeptide repeat protein 15 (TPR repeat protein|
           15)
          Length = 735

 Score = 32.0 bits (71), Expect = 0.78
 Identities = 16/43 (37%), Positives = 19/43 (44%)
 Frame = -3

Query: 193 ICTSVSLRASTRVSSGFAPLRHSSPSFGSRQACSNSNPSQKIR 65
           +CT  S RA      GF P    SPSFG     S   P Q ++
Sbjct: 159 VCTIFSQRAPPASGDGFEPQMVKSPSFGGASEASARTPPQVVQ 201

>GLI4_XENLA (Q91661) Zinc finger protein GLI4 (Neural-specific DNA-binding|
           protein xGLI4) (xGLI-4)
          Length = 1361

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
 Frame = -3

Query: 196 TICTSVSLRASTRVSSGFAPLRHSSPSFGSRQ--ACSNSNPS 77
           ++  ++S + S   S G  PL H SP+F SRQ  A +++NP+
Sbjct: 172 SLSAALSQQRSLSSSFGHTPLLHPSPTFASRQQGALTSANPA 213

>L_VSVJO (P16379) Large structural protein (L protein) (Transcriptase)|
            (Replicase) [Includes: RNA-directed RNA polymerase (EC
            2.7.7.48); mRNA (guanine-N(7)-)-methyltransferase (EC
            2.1.1.56); mRNA guanylyltransferase (EC 2.7.7.-)]
          Length = 2109

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 31/122 (25%), Positives = 45/122 (36%), Gaps = 3/122 (2%)
 Frame = -1

Query: 414  HPIPWHGSPKQPSHPTYLKXENRSRTLRPQCL*SLALPDRTRNGLQLS*GKLRRESAT-- 241
            HP+  HG P +   P  L   +    +   C   +      R  L    G    ES +  
Sbjct: 1105 HPLEMHGPPSKKERPCQLCNSSGLTYISVHCPKGIIDVFNRRGPLPAYLGSNTSESTSIL 1164

Query: 240  -RWFD*SFAPIPKSDERFARQYRFEPPPEFPLASPRSGIVHHLSGPDRRAPTRTLHRRSG 64
              W   S  PI K   R      +  PPE PL++     +  L+G D  +      +R+G
Sbjct: 1165 QPWEKESKIPIIKRATRLRDAISWFIPPESPLSTCILNNIQALTGEDWSSKQHGF-KRTG 1223

Query: 63   SA 58
            SA
Sbjct: 1224 SA 1225

>Y309_HALSA (Q9HSB8) Putative aldolase Vng0309c (EC 4.2.1.-)|
          Length = 265

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -1

Query: 135 SGIVHHLSGPDRRAPTRTLHRRSGSASGAAREGLPLVSF 19
           +G + HL+      P +T  RR+G+   A R G   VSF
Sbjct: 71  AGYIVHLNASTTLGPDQTDKRRTGTVEDAVRAGADAVSF 109

>MED4_MOUSE (Q9CQA5) Mediator complex subunit 4 (Mediator of RNA polymerase II|
           transcription subunit 4)
          Length = 270

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = -2

Query: 266 GNFGGNQLLDGSIS--LSPLYPSQTNDLHVSIASSLHQSFLWLRP 138
           G+  G+ L  G +   L+P YP Q+ND+ V++    H S   L P
Sbjct: 200 GHLPGDALAAGRLPDVLAPQYPWQSNDMSVNMLPPNHSSDFLLEP 244

>INSM1_MOUSE (Q63ZV0) Insulinoma-associated protein 1 (Zinc finger protein IA-1)|
          Length = 521

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 18/52 (34%), Positives = 22/52 (42%)
 Frame = -1

Query: 189 ARQYRFEPPPEFPLASPRSGIVHHLSGPDRRAPTRTLHRRSGSASGAAREGL 34
           A Q +  PPP  P   P   I+   +GPD +AP       SG    A   GL
Sbjct: 398 ALQAKGAPPPPPPPPPPAEDILAFYAGPDEKAP----QEASGDGEAAGVLGL 445

>BRE1_YEAST (Q07457) Ubiquitin-protein ligase BRE1 (EC 6.3.2.-) (Brefeldin|
           A-sensitivity protein 1)
          Length = 700

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = +3

Query: 90  LEHACRDPKDGELCLSGAKPEETLVEARSDTDVQIV 197
           +E  C D  + +LC   A+ +ETL+  RSD+ ++++
Sbjct: 80  IETFCTDANEKQLCREIAQGDETLIVQRSDSFMKLL 115


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,805,511
Number of Sequences: 219361
Number of extensions: 1537175
Number of successful extensions: 4209
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4043
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4207
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2909956200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)