ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bast50e10 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 507 bits (256), Expect = e-141 Identities = 292/304 (96%) Strand = Plus / Plus Query: 131 gcgccgagcggggcgaagctgctgcagatcctgaacgtgcgggtggtgggcaccggcgag 190 |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct: 5390834 gcgccgagcggggcgaagctgctgcagatcctgaacgtgcgggtggtggggagcggcgag 5390893 Query: 191 cgcgtggtggtgctgtcgcacggcttcggcacggaccagtccgcgtggagccgcgtgctg 250 || ||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||| Sbjct: 5390894 cgggtggtggtgctgtcgcatggcttcgggacggaccagtcggcgtggagccgcgtgctg 5390953 Query: 251 ccgtacctgacccgcgaccaccgcgtggtgctctacgacctcgtctgcgccggcagcgtc 310 |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 5390954 ccgtacctcacccgcgaccaccgcgtcgtgctctacgacctcgtctgcgccggcagcgtc 5391013 Query: 311 aacccggaccacttcgacttccgccgctacaacaacctggacgcctacgtggacgacctg 370 |||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||| Sbjct: 5391014 aacccggaccacttcgacttccgccgctacgacaacctcgacgcctacgtcgacgacctg 5391073 Query: 371 ctctccatcctcgacgcgctccgcatcccgcgctgcgccttcgtcggccactccgtctcc 430 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5391074 ctcgccatcctcgacgcgctccgcatcccgcgctgcgccttcgtcggccactccgtctcc 5391133 Query: 431 gcca 434 |||| Sbjct: 5391134 gcca 5391137 Score = 48.1 bits (24), Expect = 0.024 Identities = 99/124 (79%) Strand = Plus / Minus Query: 310 caacccggaccacttcgacttccgccgctacaacaacctggacgcctacgtggacgacct 369 |||||||||| ||||||||||| ||||||| || ||| || | ||||| | |||||| Sbjct: 18267977 caacccggactacttcgacttctcccgctacgccaccctcgagggctacgcgctcgacct 18267918 Query: 370 gctctccatcctcgacgcgctccgcatcccgcgctgcgccttcgtcggccactccgtctc 429 ||| |||||||| | | ||||||| || | |||| || |||||||||||||||||| Sbjct: 18267917 cctcgccatcctccaggagctccgcgtcgcctcctgcatctacgtcggccactccgtctc 18267858 Query: 430 cgcc 433 |||| Sbjct: 18267857 cgcc 18267854 Score = 40.1 bits (20), Expect = 5.8 Identities = 29/32 (90%) Strand = Plus / Minus Query: 200 gtgctgtcgcacggcttcggcacggaccagtc 231 |||||| ||||||| ||||| ||||||||||| Sbjct: 18268087 gtgctggcgcacgggttcgggacggaccagtc 18268056
>gb|AC146702.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0009J13, from chromosome 3, complete sequence Length = 147205 Score = 507 bits (256), Expect = e-141 Identities = 292/304 (96%) Strand = Plus / Plus Query: 131 gcgccgagcggggcgaagctgctgcagatcctgaacgtgcgggtggtgggcaccggcgag 190 |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct: 97002 gcgccgagcggggcgaagctgctgcagatcctgaacgtgcgggtggtggggagcggcgag 97061 Query: 191 cgcgtggtggtgctgtcgcacggcttcggcacggaccagtccgcgtggagccgcgtgctg 250 || ||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||| Sbjct: 97062 cgggtggtggtgctgtcgcatggcttcgggacggaccagtcggcgtggagccgcgtgctg 97121 Query: 251 ccgtacctgacccgcgaccaccgcgtggtgctctacgacctcgtctgcgccggcagcgtc 310 |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 97122 ccgtacctcacccgcgaccaccgcgtcgtgctctacgacctcgtctgcgccggcagcgtc 97181 Query: 311 aacccggaccacttcgacttccgccgctacaacaacctggacgcctacgtggacgacctg 370 |||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||| Sbjct: 97182 aacccggaccacttcgacttccgccgctacgacaacctcgacgcctacgtcgacgacctg 97241 Query: 371 ctctccatcctcgacgcgctccgcatcccgcgctgcgccttcgtcggccactccgtctcc 430 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 97242 ctcgccatcctcgacgcgctccgcatcccgcgctgcgccttcgtcggccactccgtctcc 97301 Query: 431 gcca 434 |||| Sbjct: 97302 gcca 97305
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 507 bits (256), Expect = e-141 Identities = 292/304 (96%) Strand = Plus / Plus Query: 131 gcgccgagcggggcgaagctgctgcagatcctgaacgtgcgggtggtgggcaccggcgag 190 |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct: 5390049 gcgccgagcggggcgaagctgctgcagatcctgaacgtgcgggtggtggggagcggcgag 5390108 Query: 191 cgcgtggtggtgctgtcgcacggcttcggcacggaccagtccgcgtggagccgcgtgctg 250 || ||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||| Sbjct: 5390109 cgggtggtggtgctgtcgcatggcttcgggacggaccagtcggcgtggagccgcgtgctg 5390168 Query: 251 ccgtacctgacccgcgaccaccgcgtggtgctctacgacctcgtctgcgccggcagcgtc 310 |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 5390169 ccgtacctcacccgcgaccaccgcgtcgtgctctacgacctcgtctgcgccggcagcgtc 5390228 Query: 311 aacccggaccacttcgacttccgccgctacaacaacctggacgcctacgtggacgacctg 370 |||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||| Sbjct: 5390229 aacccggaccacttcgacttccgccgctacgacaacctcgacgcctacgtcgacgacctg 5390288 Query: 371 ctctccatcctcgacgcgctccgcatcccgcgctgcgccttcgtcggccactccgtctcc 430 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5390289 ctcgccatcctcgacgcgctccgcatcccgcgctgcgccttcgtcggccactccgtctcc 5390348 Query: 431 gcca 434 |||| Sbjct: 5390349 gcca 5390352 Score = 48.1 bits (24), Expect = 0.024 Identities = 99/124 (79%) Strand = Plus / Minus Query: 310 caacccggaccacttcgacttccgccgctacaacaacctggacgcctacgtggacgacct 369 |||||||||| ||||||||||| ||||||| || ||| || | ||||| | |||||| Sbjct: 18261518 caacccggactacttcgacttctcccgctacgccaccctcgagggctacgcgctcgacct 18261459 Query: 370 gctctccatcctcgacgcgctccgcatcccgcgctgcgccttcgtcggccactccgtctc 429 ||| |||||||| | | ||||||| || | |||| || |||||||||||||||||| Sbjct: 18261458 cctcgccatcctccaggagctccgcgtcgcctcctgcatctacgtcggccactccgtctc 18261399 Query: 430 cgcc 433 |||| Sbjct: 18261398 cgcc 18261395 Score = 40.1 bits (20), Expect = 5.8 Identities = 29/32 (90%) Strand = Plus / Minus Query: 200 gtgctgtcgcacggcttcggcacggaccagtc 231 |||||| ||||||| ||||| ||||||||||| Sbjct: 18261628 gtgctggcgcacgggttcgggacggaccagtc 18261597
>gb|AC104429.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0006P09, complete sequence Length = 153950 Score = 507 bits (256), Expect = e-141 Identities = 292/304 (96%) Strand = Plus / Plus Query: 131 gcgccgagcggggcgaagctgctgcagatcctgaacgtgcgggtggtgggcaccggcgag 190 |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct: 120725 gcgccgagcggggcgaagctgctgcagatcctgaacgtgcgggtggtggggagcggcgag 120784 Query: 191 cgcgtggtggtgctgtcgcacggcttcggcacggaccagtccgcgtggagccgcgtgctg 250 || ||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||| Sbjct: 120785 cgggtggtggtgctgtcgcatggcttcgggacggaccagtcggcgtggagccgcgtgctg 120844 Query: 251 ccgtacctgacccgcgaccaccgcgtggtgctctacgacctcgtctgcgccggcagcgtc 310 |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 120845 ccgtacctcacccgcgaccaccgcgtcgtgctctacgacctcgtctgcgccggcagcgtc 120904 Query: 311 aacccggaccacttcgacttccgccgctacaacaacctggacgcctacgtggacgacctg 370 |||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||| Sbjct: 120905 aacccggaccacttcgacttccgccgctacgacaacctcgacgcctacgtcgacgacctg 120964 Query: 371 ctctccatcctcgacgcgctccgcatcccgcgctgcgccttcgtcggccactccgtctcc 430 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 120965 ctcgccatcctcgacgcgctccgcatcccgcgctgcgccttcgtcggccactccgtctcc 121024 Query: 431 gcca 434 |||| Sbjct: 121025 gcca 121028
>dbj|AK070827.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023064N24, full insert sequence Length = 1487 Score = 507 bits (256), Expect = e-141 Identities = 292/304 (96%) Strand = Plus / Plus Query: 131 gcgccgagcggggcgaagctgctgcagatcctgaacgtgcgggtggtgggcaccggcgag 190 |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct: 350 gcgccgagcggggcgaagctgctgcagatcctgaacgtgcgggtggtggggagcggcgag 409 Query: 191 cgcgtggtggtgctgtcgcacggcttcggcacggaccagtccgcgtggagccgcgtgctg 250 || ||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||| Sbjct: 410 cgggtggtggtgctgtcgcatggcttcgggacggaccagtcggcgtggagccgcgtgctg 469 Query: 251 ccgtacctgacccgcgaccaccgcgtggtgctctacgacctcgtctgcgccggcagcgtc 310 |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 470 ccgtacctcacccgcgaccaccgcgtcgtgctctacgacctcgtctgcgccggcagcgtc 529 Query: 311 aacccggaccacttcgacttccgccgctacaacaacctggacgcctacgtggacgacctg 370 |||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||| Sbjct: 530 aacccggaccacttcgacttccgccgctacgacaacctcgacgcctacgtcgacgacctg 589 Query: 371 ctctccatcctcgacgcgctccgcatcccgcgctgcgccttcgtcggccactccgtctcc 430 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 590 ctcgccatcctcgacgcgctccgcatcccgcgctgcgccttcgtcggccactccgtctcc 649 Query: 431 gcca 434 |||| Sbjct: 650 gcca 653
>gb|AY389613.1| Hyacinthus orientalis esterase/lipase/thioesterase mRNA, partial cds Length = 485 Score = 167 bits (84), Expect = 4e-38 Identities = 150/172 (87%) Strand = Plus / Plus Query: 263 cgcgaccaccgcgtggtgctctacgacctcgtctgcgccggcagcgtcaacccggaccac 322 |||||||||||| | || ||||||||||||| ||||||||||||||||||||| |||||| Sbjct: 159 cgcgaccaccgcatcgtcctctacgacctcgcctgcgccggcagcgtcaaccccgaccac 218 Query: 323 ttcgacttccgccgctacaacaacctggacgcctacgtggacgacctgctctccatcctc 382 ||||||||| |||||||| | ||| ||||||||||| |||||||| ||||||||| || Sbjct: 219 ttcgacttcgcccgctacacctccctcgacgcctacgtcgacgacctcctctccatcatc 278 Query: 383 gacgcgctccgcatcccgcgctgcgccttcgtcggccactccgtctccgcca 434 ||||| ||||||||| |||||| || |||||| ||||||| ||||||||| Sbjct: 279 gacgccctccgcatcgaccgctgctccctcgtcgcccactccttctccgcca 330 Score = 65.9 bits (33), Expect = 1e-07 Identities = 83/97 (85%), Gaps = 2/97 (2%) Strand = Plus / Plus Query: 146 aagctgctgcagatcctgaacgtgcgggtggtgggcaccggcgagc-gcgtggtggtgct 204 ||||||||| |||| ||||||||| ||||||||||| ||||| ||| |||||||| || Sbjct: 42 aagctgctggagatactgaacgtgagggtggtgggctccggc-agcaaggtggtggttct 100 Query: 205 gtcgcacggcttcggcacggaccagtccgcgtggagc 241 || |||||||||||||| |||||||| | ||||||| Sbjct: 101 ctcccacggcttcggcaccgaccagtctgtgtggagc 137
>gb|AY109150.1| Zea mays PCO113685 mRNA sequence Length = 645 Score = 79.8 bits (40), Expect = 7e-12 Identities = 43/44 (97%) Strand = Plus / Plus Query: 391 ccgcatcccgcgctgcgccttcgtcggccactccgtctccgcca 434 ||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 178 ccgcatcgcgcgctgcgccttcgtcggccactccgtctccgcca 221
>emb|AM260506.1| Platanus acerifolia partial mRNA for hydrolase (hyd2 gene) Length = 828 Score = 65.9 bits (33), Expect = 1e-07 Identities = 48/53 (90%) Strand = Plus / Plus Query: 281 ctctacgacctcgtctgcgccggcagcgtcaacccggaccacttcgacttccg 333 ||||||||||||||||||||||| ||||| ||||| || ||||| |||||||| Sbjct: 294 ctctacgacctcgtctgcgccggtagcgtaaaccccgatcactttgacttccg 346
>gb|AY105548.1| Zea mays PCO095526 mRNA sequence Length = 852 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 200 gtgctgtcgcacggcttcggcacggaccagtccgcgtgga 239 |||||| |||||||||||||||| |||||||||| ||||| Sbjct: 293 gtgctggcgcacggcttcggcaccgaccagtccgtgtgga 332 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 412 cgtcggccactccgtctccgc 432 ||||||||||||||||||||| Sbjct: 505 cgtcggccactccgtctccgc 525
>ref|XM_468840.1| Oryza sativa (japonica cultivar-group), mRNA Length = 942 Score = 48.1 bits (24), Expect = 0.024 Identities = 99/124 (79%) Strand = Plus / Plus Query: 310 caacccggaccacttcgacttccgccgctacaacaacctggacgcctacgtggacgacct 369 |||||||||| ||||||||||| ||||||| || ||| || | ||||| | |||||| Sbjct: 174 caacccggactacttcgacttctcccgctacgccaccctcgagggctacgcgctcgacct 233 Query: 370 gctctccatcctcgacgcgctccgcatcccgcgctgcgccttcgtcggccactccgtctc 429 ||| |||||||| | | ||||||| || | |||| || |||||||||||||||||| Sbjct: 234 cctcgccatcctccaggagctccgcgtcgcctcctgcatctacgtcggccactccgtctc 293 Query: 430 cgcc 433 |||| Sbjct: 294 cgcc 297 Score = 40.1 bits (20), Expect = 5.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 200 gtgctgtcgcacggcttcggcacggaccagtc 231 |||||| ||||||| ||||| ||||||||||| Sbjct: 64 gtgctggcgcacgggttcgggacggaccagtc 95
>gb|AC106887.3| Oryza sativa chromosome 3 BAC OSJNBa0054H04 genomic sequence, complete sequence Length = 159579 Score = 48.1 bits (24), Expect = 0.024 Identities = 99/124 (79%) Strand = Plus / Minus Query: 310 caacccggaccacttcgacttccgccgctacaacaacctggacgcctacgtggacgacct 369 |||||||||| ||||||||||| ||||||| || ||| || | ||||| | |||||| Sbjct: 34408 caacccggactacttcgacttctcccgctacgccaccctcgagggctacgcgctcgacct 34349 Query: 370 gctctccatcctcgacgcgctccgcatcccgcgctgcgccttcgtcggccactccgtctc 429 ||| |||||||| | | ||||||| || | |||| || |||||||||||||||||| Sbjct: 34348 cctcgccatcctccaggagctccgcgtcgcctcctgcatctacgtcggccactccgtctc 34289 Query: 430 cgcc 433 |||| Sbjct: 34288 cgcc 34285 Score = 40.1 bits (20), Expect = 5.8 Identities = 29/32 (90%) Strand = Plus / Minus Query: 200 gtgctgtcgcacggcttcggcacggaccagtc 231 |||||| ||||||| ||||| ||||||||||| Sbjct: 34518 gtgctggcgcacgggttcgggacggaccagtc 34487
>emb|BX248354.1| Corynebacterium diphtheriae gravis NCTC13129, complete genome; segment 1/8 Length = 348517 Score = 48.1 bits (24), Expect = 0.024 Identities = 24/24 (100%) Strand = Plus / Minus Query: 350 gacgcctacgtggacgacctgctc 373 |||||||||||||||||||||||| Sbjct: 85343 gacgcctacgtggacgacctgctc 85320
>dbj|AK104400.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-202-E03, full insert sequence Length = 1175 Score = 48.1 bits (24), Expect = 0.024 Identities = 99/124 (79%) Strand = Plus / Plus Query: 310 caacccggaccacttcgacttccgccgctacaacaacctggacgcctacgtggacgacct 369 |||||||||| ||||||||||| ||||||| || ||| || | ||||| | |||||| Sbjct: 322 caacccggactacttcgacttctcccgctacgccaccctcgagggctacgcgctcgacct 381 Query: 370 gctctccatcctcgacgcgctccgcatcccgcgctgcgccttcgtcggccactccgtctc 429 ||| |||||||| | | ||||||| || | |||| || |||||||||||||||||| Sbjct: 382 cctcgccatcctccaggagctccgcgtcgcctcctgcatctacgtcggccactccgtctc 441 Query: 430 cgcc 433 |||| Sbjct: 442 cgcc 445 Score = 40.1 bits (20), Expect = 5.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 200 gtgctgtcgcacggcttcggcacggaccagtc 231 |||||| ||||||| ||||| ||||||||||| Sbjct: 212 gtgctggcgcacgggttcgggacggaccagtc 243
>dbj|AK104138.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-204-H10, full insert sequence Length = 1172 Score = 48.1 bits (24), Expect = 0.024 Identities = 99/124 (79%) Strand = Plus / Plus Query: 310 caacccggaccacttcgacttccgccgctacaacaacctggacgcctacgtggacgacct 369 |||||||||| ||||||||||| ||||||| || ||| || | ||||| | |||||| Sbjct: 319 caacccggactacttcgacttctcccgctacgccaccctcgagggctacgcgctcgacct 378 Query: 370 gctctccatcctcgacgcgctccgcatcccgcgctgcgccttcgtcggccactccgtctc 429 ||| |||||||| | | ||||||| || | |||| || |||||||||||||||||| Sbjct: 379 cctcgccatcctccaggagctccgcgtcgcctcctgcatctacgtcggccactccgtctc 438 Query: 430 cgcc 433 |||| Sbjct: 439 cgcc 442 Score = 40.1 bits (20), Expect = 5.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 200 gtgctgtcgcacggcttcggcacggaccagtc 231 |||||| ||||||| ||||| ||||||||||| Sbjct: 209 gtgctggcgcacgggttcgggacggaccagtc 240
>dbj|AK073355.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033030A08, full insert sequence Length = 1245 Score = 48.1 bits (24), Expect = 0.024 Identities = 99/124 (79%) Strand = Plus / Plus Query: 310 caacccggaccacttcgacttccgccgctacaacaacctggacgcctacgtggacgacct 369 |||||||||| ||||||||||| ||||||| || ||| || | ||||| | |||||| Sbjct: 321 caacccggactacttcgacttctcccgctacgccaccctcgagggctacgcgctcgacct 380 Query: 370 gctctccatcctcgacgcgctccgcatcccgcgctgcgccttcgtcggccactccgtctc 429 ||| |||||||| | | ||||||| || | |||| || |||||||||||||||||| Sbjct: 381 cctcgccatcctccaggagctccgcgtcgcctcctgcatctacgtcggccactccgtctc 440 Query: 430 cgcc 433 |||| Sbjct: 441 cgcc 444 Score = 40.1 bits (20), Expect = 5.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 200 gtgctgtcgcacggcttcggcacggaccagtc 231 |||||| ||||||| ||||| ||||||||||| Sbjct: 211 gtgctggcgcacgggttcgggacggaccagtc 242
>dbj|AK061303.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-G08, full insert sequence Length = 1070 Score = 48.1 bits (24), Expect = 0.024 Identities = 99/124 (79%) Strand = Plus / Plus Query: 310 caacccggaccacttcgacttccgccgctacaacaacctggacgcctacgtggacgacct 369 |||||||||| ||||||||||| ||||||| || ||| || | ||||| | |||||| Sbjct: 222 caacccggactacttcgacttctcccgctacgccaccctcgagggctacgcgctcgacct 281 Query: 370 gctctccatcctcgacgcgctccgcatcccgcgctgcgccttcgtcggccactccgtctc 429 ||| |||||||| | | ||||||| || | |||| || |||||||||||||||||| Sbjct: 282 cctcgccatcctccaggagctccgcgtcgcctcctgcatctacgtcggccactccgtctc 341 Query: 430 cgcc 433 |||| Sbjct: 342 cgcc 345 Score = 40.1 bits (20), Expect = 5.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 200 gtgctgtcgcacggcttcggcacggaccagtc 231 |||||| ||||||| ||||| ||||||||||| Sbjct: 112 gtgctggcgcacgggttcgggacggaccagtc 143
>ref|XM_482242.1| Oryza sativa (japonica cultivar-group), mRNA Length = 911 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 174 tggtgggcaccggcgagcgcgt 195 |||||||||||||||||||||| Sbjct: 205 tggtgggcaccggcgagcgcgt 184
>ref|XM_507223.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1198_B10.8 mRNA Length = 1009 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 174 tggtgggcaccggcgagcgcgt 195 |||||||||||||||||||||| Sbjct: 226 tggtgggcaccggcgagcgcgt 205
>ref|XM_507222.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1198_B10.8 mRNA Length = 1358 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 174 tggtgggcaccggcgagcgcgt 195 |||||||||||||||||||||| Sbjct: 311 tggtgggcaccggcgagcgcgt 290
>gb|CP000080.1| Leishmania major strain Friedlin chromosome 29, complete sequence Length = 1212674 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 274 cgtggtgctctacgacctcgtc 295 |||||||||||||||||||||| Sbjct: 1257 cgtggtgctctacgacctcgtc 1278
>ref|XM_842567.1| Leishmania major strain Friedlin 3,2-trans-enoyl-CoA isomerase, mitochondrial precursor-like protein (LMJ_0637) partial mRNA Length = 891 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 274 cgtggtgctctacgacctcgtc 295 |||||||||||||||||||||| Sbjct: 667 cgtggtgctctacgacctcgtc 646
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 174 tggtgggcaccggcgagcgcgt 195 |||||||||||||||||||||| Sbjct: 18949872 tggtgggcaccggcgagcgcgt 18949851
>dbj|AP003947.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1198_B10 Length = 119768 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 174 tggtgggcaccggcgagcgcgt 195 |||||||||||||||||||||| Sbjct: 34792 tggtgggcaccggcgagcgcgt 34771
>dbj|AK109817.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-148-A02, full insert sequence Length = 1358 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 174 tggtgggcaccggcgagcgcgt 195 |||||||||||||||||||||| Sbjct: 311 tggtgggcaccggcgagcgcgt 290
>dbj|AK098973.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089E18, full insert sequence Length = 913 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 174 tggtgggcaccggcgagcgcgt 195 |||||||||||||||||||||| Sbjct: 205 tggtgggcaccggcgagcgcgt 184
>dbj|AK070773.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023072C11, full insert sequence Length = 801 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 412 cgtcggccactccgtctccgcc 433 |||||||||||||||||||||| Sbjct: 60 cgtcggccactccgtctccgcc 81
>dbj|AK060114.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-D12, full insert sequence Length = 1009 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 174 tggtgggcaccggcgagcgcgt 195 |||||||||||||||||||||| Sbjct: 226 tggtgggcaccggcgagcgcgt 205
>ref|NM_194743.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0013J21.2), mRNA Length = 426 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 131 gcgccgagcggggcgaagctg 151 ||||||||||||||||||||| Sbjct: 28 gcgccgagcggggcgaagctg 48
>gb|AC079843.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0013J21, complete sequence Length = 155290 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 131 gcgccgagcggggcgaagctg 151 ||||||||||||||||||||| Sbjct: 10630 gcgccgagcggggcgaagctg 10650
>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone Pseudo10p0.0-10p4.4, complete sequence Length = 2331000 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 131 gcgccgagcggggcgaagctg 151 ||||||||||||||||||||| Sbjct: 2032490 gcgccgagcggggcgaagctg 2032510
>gb|AC099734.5| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBb0004A06, complete sequence Length = 153510 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 131 gcgccgagcggggcgaagctg 151 ||||||||||||||||||||| Sbjct: 123219 gcgccgagcggggcgaagctg 123239
>gb|AE011626.1| Xanthomonas axonopodis pv. citri str. 306, section 4 of 469 of the complete genome Length = 11366 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 181 caccggcgagcgcgtggtggtgctg 205 ||||||| ||||||||||||||||| Sbjct: 5753 caccggcaagcgcgtggtggtgctg 5729
>gb|S64103.1| oar=OmpA-related protein, mlpA=putative lipoprotein [Myxococcus xanthus, Genomic, 4710 nt] Length = 4710 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 117 cgatggtcgggggcgcgccga 137 ||||||||||||||||||||| Sbjct: 622 cgatggtcgggggcgcgccga 602
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Minus Query: 380 ctcgacgcgctccgcatcccgcgctgcgccttcgtcggcca 420 ||||||||||| ||||||| |||||||| |||||||||| Sbjct: 1438018 ctcgacgcgctgcgcatccagcgctgcgtgctcgtcggcca 1437978
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 131 gcgccgagcggggcgaagctg 151 ||||||||||||||||||||| Sbjct: 2032490 gcgccgagcggggcgaagctg 2032510
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 131 gcgccgagcggggcgaagctg 151 ||||||||||||||||||||| Sbjct: 2032441 gcgccgagcggggcgaagctg 2032461
>gb|AE008737.2| Salmonella typhimurium LT2, section 45 of 220 of the complete genome Length = 65219 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 385 cgcgctccgcatcccgcgctgcgc 408 |||||||||||| ||||||||||| Sbjct: 7675 cgcgctccgcataccgcgctgcgc 7652
>emb|BX640439.1| Bordetella bronchiseptica strain RB50, complete genome; segment 3/16 Length = 346362 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 265 cgaccaccgcgtggtgctctacga 288 ||||||||||||||||||| |||| Sbjct: 159499 cgaccaccgcgtggtgctcgacga 159522
>emb|BX640425.1| Bordetella parapertussis strain 12822, complete genome; segment 3/14 Length = 348257 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 265 cgaccaccgcgtggtgctctacga 288 ||||||||||||||||||| |||| Sbjct: 72305 cgaccaccgcgtggtgctcgacga 72328
>emb|AL627268.1| Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18, complete chromosome; segment 4/20 Length = 294050 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 385 cgcgctccgcatcccgcgctgcgc 408 |||||||||||| ||||||||||| Sbjct: 152602 cgcgctccgcataccgcgctgcgc 152579
>gb|CP000136.1| Rhizobium etli CFN 42 plasmid p42c, complete sequence Length = 250948 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 cgacctcgtctgcgccggca 305 |||||||||||||||||||| Sbjct: 158874 cgacctcgtctgcgccggca 158893
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 89 ccggccccggcgtccggctc 108 |||||||||||||||||||| Sbjct: 799432 ccggccccggcgtccggctc 799413
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 tcagtcgtctcatgctccgg 37 |||||||||||||||||||| Sbjct: 3476806 tcagtcgtctcatgctccgg 3476787
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 247 gctgccgtacctgacccgcgaccaccgc 274 |||| ||||||| ||||||||||||||| Sbjct: 425373 gctgacgtacctcacccgcgaccaccgc 425346
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 178 gggcaccggcgagcgcgtgg 197 |||||||||||||||||||| Sbjct: 7423650 gggcaccggcgagcgcgtgg 7423631
>dbj|AK109146.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-155-F04, full insert sequence Length = 1184 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 397 cccgcgctgcgccttcgtcg 416 |||||||||||||||||||| Sbjct: 295 cccgcgctgcgccttcgtcg 314
>gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome Length = 4791961 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 385 cgcgctccgcatcccgcgctgcgc 408 |||||||||||| ||||||||||| Sbjct: 2069475 cgcgctccgcataccgcgctgcgc 2069498
>gb|AE017220.1| Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67, complete genome Length = 4755700 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 385 cgcgctccgcatcccgcgctgcgc 408 |||||||||||| ||||||||||| Sbjct: 984925 cgcgctccgcataccgcgctgcgc 984902
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 117 cgatggtcgggggcgcgccg 136 |||||||||||||||||||| Sbjct: 2078560 cgatggtcgggggcgcgccg 2078541
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 247 gctgccgtacctgacccgcgaccaccgc 274 |||| ||||||| ||||||||||||||| Sbjct: 425373 gctgacgtacctcacccgcgaccaccgc 425346
>emb|BX000492.1|CNS08CDI Oryza sativa chromosome 12, . BAC OSJNBa0024J08 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 141089 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 247 gctgccgtacctgacccgcgaccaccgc 274 |||| ||||||| ||||||||||||||| Sbjct: 121399 gctgacgtacctcacccgcgaccaccgc 121426 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,018,086 Number of Sequences: 3902068 Number of extensions: 2018086 Number of successful extensions: 45325 Number of sequences better than 10.0: 51 Number of HSP's better than 10.0 without gapping: 53 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 44235 Number of HSP's gapped (non-prelim): 1090 length of query: 434 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 412 effective length of database: 17,147,199,772 effective search space: 7064646306064 effective search space used: 7064646306064 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
