ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast50e01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PGIP1_ORYSA (Q8GT95) Polygalacturonase inhibitor 1 precursor (Po... 79 2e-15
2PGIP3_PHAVU (P58823) Polygalacturonase inhibitor 3 precursor (Po... 46 3e-05
3PGIP2_PHAVU (P58822) Polygalacturonase inhibitor 2 precursor (Po... 46 3e-05
4PGIP1_PHAVU (P35334) Polygalacturonase inhibitor 1 precursor (Po... 46 3e-05
5PGIP1_ARATH (Q9M5J9) Polygalacturonase inhibitor 1 precursor (Po... 45 6e-05
6PGIP2_ARATH (Q9M5J8) Polygalacturonase inhibitor 2 precursor (Po... 43 2e-04
7PGIP_PYRCO (Q05091) Polygalacturonase inhibitor precursor (Polyg... 39 0.003
8BAK1_ARATH (Q94F62) BRASSINOSTEROID INSENSITIVE 1-associated rec... 29 2.6
9EXS_ARATH (Q9LYN8) Leucine-rich repeat receptor protein kinase E... 28 5.8

>PGIP1_ORYSA (Q8GT95) Polygalacturonase inhibitor 1 precursor|
           (Polygalacturonase-inhibiting protein) (Floral organ
           regulator 1)
          Length = 332

 Score = 79.3 bits (194), Expect = 2e-15
 Identities = 32/42 (76%), Positives = 38/42 (90%)
 Frame = +3

Query: 192 RCPQADRQALLRVKQALGNPATLKTWSPASADCCTWDHLRCE 317
           RCP +D+QAL+RVKQ+LGNPATL TWS ASADCC WDH+RC+
Sbjct: 26  RCPPSDKQALMRVKQSLGNPATLSTWSLASADCCEWDHVRCD 67



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>PGIP3_PHAVU (P58823) Polygalacturonase inhibitor 3 precursor|
           (Polygalacturonase-inhibiting protein) (PGIP-2) (PGIP-3)
          Length = 342

 Score = 45.8 bits (107), Expect = 3e-05
 Identities = 21/43 (48%), Positives = 29/43 (67%), Gaps = 2/43 (4%)
 Frame = +3

Query: 195 CPQADRQALLRVKQALGNPATLKTWSPASADCC--TWDHLRCE 317
           C   D+QALL++K+ LGNP TL +W P + DCC  TW  + C+
Sbjct: 32  CNPQDKQALLQIKKDLGNPTTLSSWLP-TTDCCNRTWLGVLCD 73



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>PGIP2_PHAVU (P58822) Polygalacturonase inhibitor 2 precursor|
           (Polygalacturonase-inhibiting protein) (PGIP-2)
          Length = 342

 Score = 45.8 bits (107), Expect = 3e-05
 Identities = 21/43 (48%), Positives = 29/43 (67%), Gaps = 2/43 (4%)
 Frame = +3

Query: 195 CPQADRQALLRVKQALGNPATLKTWSPASADCC--TWDHLRCE 317
           C   D+QALL++K+ LGNP TL +W P + DCC  TW  + C+
Sbjct: 32  CNPQDKQALLQIKKDLGNPTTLSSWLP-TTDCCNRTWLGVLCD 73



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>PGIP1_PHAVU (P35334) Polygalacturonase inhibitor 1 precursor|
           (Polygalacturonase-inhibiting protein) (PGIP-1)
          Length = 342

 Score = 45.8 bits (107), Expect = 3e-05
 Identities = 21/43 (48%), Positives = 29/43 (67%), Gaps = 2/43 (4%)
 Frame = +3

Query: 195 CPQADRQALLRVKQALGNPATLKTWSPASADCC--TWDHLRCE 317
           C   D+QALL++K+ LGNP TL +W P + DCC  TW  + C+
Sbjct: 32  CNPQDKQALLQIKKDLGNPTTLSSWLP-TTDCCNRTWLGVLCD 73



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>PGIP1_ARATH (Q9M5J9) Polygalacturonase inhibitor 1 precursor|
           (Polygalacturonase-inhibiting protein) (PGIP-1)
          Length = 330

 Score = 44.7 bits (104), Expect = 6e-05
 Identities = 18/40 (45%), Positives = 25/40 (62%)
 Frame = +3

Query: 195 CPQADRQALLRVKQALGNPATLKTWSPASADCCTWDHLRC 314
           C Q D+  LL++K++L NP  L +W P   DCC+W  L C
Sbjct: 25  CNQNDKNTLLKIKKSLNNPYHLASWDP-QTDCCSWYCLEC 63



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>PGIP2_ARATH (Q9M5J8) Polygalacturonase inhibitor 2 precursor|
           (Polygalacturonase-inhibiting protein) (PGIP-2)
          Length = 330

 Score = 42.7 bits (99), Expect = 2e-04
 Identities = 17/40 (42%), Positives = 25/40 (62%)
 Frame = +3

Query: 195 CPQADRQALLRVKQALGNPATLKTWSPASADCCTWDHLRC 314
           C + D+  LL++K++L NP  L +W P   DCC+W  L C
Sbjct: 25  CHKDDKTTLLKIKKSLNNPYHLASWDP-KTDCCSWYCLEC 63



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>PGIP_PYRCO (Q05091) Polygalacturonase inhibitor precursor|
           (Polygalacturonase-inhibiting protein)
          Length = 330

 Score = 39.3 bits (90), Expect = 0.003
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = +3

Query: 195 CPQADRQALLRVKQALGNPATLKTWSPASADCCTWDHLRCE 317
           C   D++ LL++K+A G+P  L +W  +  DCC W  + C+
Sbjct: 27  CNPDDKKVLLQIKKAFGDPYVLASWK-SDTDCCDWYCVTCD 66



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>BAK1_ARATH (Q94F62) BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1|
           precursor (EC 2.7.11.1) (BRI1-associated receptor kinase
           1) (Somatic embryogenesis receptor-like kinase 3)
          Length = 615

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +3

Query: 204 ADRQALLRVKQALGNP-ATLKTWSPASADCCTWDHLRC 314
           A+  AL  +K +L +P   L++W       CTW H+ C
Sbjct: 27  AEGDALSALKNSLADPNKVLQSWDATLVTPCTWFHVTC 64



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>EXS_ARATH (Q9LYN8) Leucine-rich repeat receptor protein kinase EXS precursor|
           (EC 2.7.11.1) (Extra sporogenous cells protein) (EXCESS
           MICROSPOROCYTES1 protein)
          Length = 1192

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +3

Query: 204 ADRQALLRVKQALGNPATLKTWS-PASADCCTWDHLRC 314
           ++  +L+  K++L NP+ L +W+  +SA  C W  + C
Sbjct: 25  SETTSLISFKRSLENPSLLSSWNVSSSASHCDWVGVTC 62


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,890,451
Number of Sequences: 219361
Number of extensions: 193901
Number of successful extensions: 756
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 80,573,946
effective HSP length: 82
effective length of database: 62,586,344
effective search space used: 1502072256
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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