ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast50d11 |
|---|---|
| Clone Library Name | barley_pub |
>SYP61_ARATH (Q946Y7) Syntaxin-61 (AtSYP61) (Osmotic stress-sensitive mutant 1)| Length = 245 Score = 48.9 bits (115), Expect = 6e-06 Identities = 25/67 (37%), Positives = 39/67 (58%) Frame = +1 Query: 115 KDPFFLAAEEVQESADRMESVYKIWVQERSGGDSALAGEVGAVELRRELHTALGTAKWQL 294 +DPF++ EE+Q+S D+++S + W ER D V +EL G+ +WQ+ Sbjct: 5 QDPFYIVKEEIQDSIDKLQSTFHKW--ERISPDMGDQAHVA-----KELVATCGSIEWQV 57 Query: 295 DELERAI 315 DELE+AI Sbjct: 58 DELEKAI 64
>STX6_RAT (Q63635) Syntaxin-6| Length = 255 Score = 40.4 bits (93), Expect = 0.002 Identities = 23/110 (20%), Positives = 53/110 (48%), Gaps = 3/110 (2%) Frame = +1 Query: 115 KDPFFLAAEEVQESADRMESVYKIWVQERSGGDSALAGEVGAVELRRELHTALGTAKWQL 294 +DPFF+ EVQ++ + + +++ W + G +A E+ EL L + +W L Sbjct: 4 EDPFFVVKGEVQKAVNTAQGLFQRWTELLQGPSAATREEIDWT--TNELRNNLRSIEWDL 61 Query: 295 DELERAI---RSNDEVVSAGKDTRALHSNFVAAIAYRILEVEXHLNASNV 435 ++L+ I +N + ++ F+ + + +++ ++AS+V Sbjct: 62 EDLDETISIVEANPRKFNLDATELSIRKAFITSTRQIVRDMKDQMSASSV 111
>STX6_MOUSE (Q9JKK1) Syntaxin-6| Length = 255 Score = 40.4 bits (93), Expect = 0.002 Identities = 23/110 (20%), Positives = 53/110 (48%), Gaps = 3/110 (2%) Frame = +1 Query: 115 KDPFFLAAEEVQESADRMESVYKIWVQERSGGDSALAGEVGAVELRRELHTALGTAKWQL 294 +DPFF+ EVQ++ + + +++ W + G +A E+ EL L + +W L Sbjct: 4 EDPFFVVKGEVQKAVNTAQGLFQRWTELLQGPSAATREEIDWT--TNELRNNLRSIEWDL 61 Query: 295 DELERAI---RSNDEVVSAGKDTRALHSNFVAAIAYRILEVEXHLNASNV 435 ++L+ I +N + ++ F+ + + +++ ++AS+V Sbjct: 62 EDLDETISIVEANPRKFNLDATELSIRKAFITSTRQIVRDMKDQMSASSV 111
>STX10_HUMAN (O60499) Syntaxin-10 (Syn10)| Length = 249 Score = 37.4 bits (85), Expect = 0.019 Identities = 20/67 (29%), Positives = 33/67 (49%) Frame = +1 Query: 115 KDPFFLAAEEVQESADRMESVYKIWVQERSGGDSALAGEVGAVELRRELHTALGTAKWQL 294 +DPFF+ EVQ++ + +Y+ W + +SA G EL L + +W L Sbjct: 4 EDPFFVVRGEVQKAVNTARGLYQRWCELLQ--ESAAVGREELDWTTNELRNGLRSIEWDL 61 Query: 295 DELERAI 315 ++LE I Sbjct: 62 EDLEETI 68
>STX6_PONPY (Q5R6Q2) Syntaxin-6| Length = 255 Score = 36.2 bits (82), Expect = 0.042 Identities = 21/110 (19%), Positives = 51/110 (46%), Gaps = 3/110 (2%) Frame = +1 Query: 115 KDPFFLAAEEVQESADRMESVYKIWVQERSGGDSALAGEVGAVELRRELHTALGTAKWQL 294 +DPFF+ EVQ++ + + +++ W + +A E+ EL L + +W L Sbjct: 4 EDPFFVVKGEVQKAVNTAQGLFQRWTELLQDPSTATREEIDWT--TNELRNNLRSIEWDL 61 Query: 295 DELERAI---RSNDEVVSAGKDTRALHSNFVAAIAYRILEVEXHLNASNV 435 ++L+ I +N + ++ F+ + + +++ ++ S+V Sbjct: 62 EDLDETISIVEANPRKFNLDATELSIRKAFITSTRQVVRDMKDQMSTSSV 111
>STX6_HUMAN (O43752) Syntaxin-6| Length = 255 Score = 36.2 bits (82), Expect = 0.042 Identities = 21/110 (19%), Positives = 51/110 (46%), Gaps = 3/110 (2%) Frame = +1 Query: 115 KDPFFLAAEEVQESADRMESVYKIWVQERSGGDSALAGEVGAVELRRELHTALGTAKWQL 294 +DPFF+ EVQ++ + + +++ W + +A E+ EL L + +W L Sbjct: 4 EDPFFVVKGEVQKAVNTAQGLFQRWTELLQDPSTATREEIDWT--TNELRNNLRSIEWDL 61 Query: 295 DELERAI---RSNDEVVSAGKDTRALHSNFVAAIAYRILEVEXHLNASNV 435 ++L+ I +N + ++ F+ + + +++ ++ S+V Sbjct: 62 EDLDETISIVEANPRKFNLDATELSIRKAFITSTRQVVRDMKDQMSTSSV 111
>STX6_CHICK (Q5ZL19) Syntaxin-6| Length = 254 Score = 35.0 bits (79), Expect = 0.093 Identities = 21/110 (19%), Positives = 50/110 (45%), Gaps = 3/110 (2%) Frame = +1 Query: 115 KDPFFLAAEEVQESADRMESVYKIWVQERSGGDSALAGEVGAVELRRELHTALGTAKWQL 294 +DPFF+ EVQ++ + + +++ W + A E+ EL L + +W L Sbjct: 4 EDPFFVVKGEVQKAVNTAQGLFQRWTELLQDPSIATREEIDWT--TNELRNNLRSIEWDL 61 Query: 295 DELERAI---RSNDEVVSAGKDTRALHSNFVAAIAYRILEVEXHLNASNV 435 ++L+ I +N + + +F+ + + E++ ++ S++ Sbjct: 62 EDLDETISIVEANPRKFNLDATELGIRKSFITSTRQVVREMKDQMSNSSM 111
>GRPE_RALSO (Q8XW36) Protein grpE (HSP-70 cofactor)| Length = 214 Score = 33.1 bits (74), Expect = 0.36 Identities = 34/123 (27%), Positives = 51/123 (41%), Gaps = 14/123 (11%) Frame = +1 Query: 133 AAEEVQESA---DRMESVYKIWVQERSGGDSALAGEVGAV----------ELRRELHTAL 273 AAE Q SA + S Y Q S A+AG+ AV ELRR+L A Sbjct: 15 AAESAQSSAAAAGQAASAYSSQAQRASADAQAIAGDEAAVAEATIEPDTAELRRQLEAAD 74 Query: 274 GTAKWQLDELERAIRSNDEVVSAGKDTRA-LHSNFVAAIAYRILEVEXHLNASNVAEGRG 450 A+ + RA+ + + +D A H + A +L V L A+ +A+ G Sbjct: 75 EKARQNYENWARAVAEGENIRRRAQDDVARAHKFAIEGFAEYLLPVMDSLQAA-LADASG 133 Query: 451 TLS 459 ++ Sbjct: 134 DVA 136
>Y139_CHLPN (Q9Z944) UPF0301 protein CPn_0139/CP0633/CPj0139/CpB0140| Length = 188 Score = 32.7 bits (73), Expect = 0.46 Identities = 16/55 (29%), Positives = 26/55 (47%) Frame = +1 Query: 205 GGDSALAGEVGAVELRRELHTALGTAKWQLDELERAIRSNDEVVSAGKDTRALHS 369 GGD E+ + E E++ G + WQ +LE+ SND ++ G +S Sbjct: 104 GGDLPFLQEIASSESGPEINLCFGYSGWQAGQLEKEFLSNDWFLAPGNKDYVFYS 158
>NFX1_HUMAN (Q12986) Transcriptional repressor NF-X1 (EC 6.3.2.-) (Nuclear| transcription factor, X box-binding, 1) Length = 1104 Score = 30.8 bits (68), Expect = 1.8 Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 1/56 (1%) Frame = +2 Query: 200 GAAAIRPSPGRSAPSSCDASCTPRSAPPSGSLMNWSGQLDQTTRLSR-QERIREHC 364 G + PG+ P SC+ C P PP + M + + +T R + + HC Sbjct: 425 GEVCRKKQPGQDCPHSCNLLCHPGPCPPCPAFMTKTCECGRTRHTVRCGQAVSVHC 480
>PRP12_MOUSE (Q8BZ20) Poly [ADP-ribose] polymerase 12 (EC 2.4.2.30) (PARP-12)| (Zinc finger CCCH type domain-containing protein 1) Length = 711 Score = 30.4 bits (67), Expect = 2.3 Identities = 22/58 (37%), Positives = 28/58 (48%) Frame = +1 Query: 217 ALAGEVGAVELRRELHTALGTAKWQLDELERAIRSNDEVVSAGKDTRALHSNFVAAIA 390 A G + ELRR L T+LGT D LER +R V A + A+ + AA A Sbjct: 17 AAGGALELAELRRRLRTSLGT-----DALERLLRDCGRFVVASRAVVAVGAGREAAAA 69
>YI32_AGRT7 (P05679) Insertion element IS136 hypothetical 21.2 kDa protein| Length = 194 Score = 30.0 bits (66), Expect = 3.0 Identities = 19/45 (42%), Positives = 20/45 (44%), Gaps = 2/45 (4%) Frame = +2 Query: 227 GRSAPSSCDASC--TPRSAPPSGSLMNWSGQLDQTTRLSRQERIR 355 G PSSCD +C TP PP SL N Q RL R R Sbjct: 67 GFRPPSSCDRACAPTPGRDPPVSSLPNSRQPARQNPRLQHLPRSR 111
>NCOR2_HUMAN (Q9Y618) Nuclear receptor corepressor 2 (N-CoR2) (Silencing mediator| of retinoic acid and thyroid hormone receptor) (SMRT) (SMRTe) (Thyroid-, retinoic-acid-receptor-associated corepressor) (T3 receptor-associating factor) (TRAC) (CTG repeat p Length = 2517 Score = 29.6 bits (65), Expect = 3.9 Identities = 14/32 (43%), Positives = 18/32 (56%) Frame = -2 Query: 285 LGGAERGVQLASQLDGADLPGEGRIAAAPLLH 190 LGG E G++ S +G PG R A PLL+ Sbjct: 2215 LGGGEDGIEPVSPPEGMTEPGHSRSAVYPLLY 2246
>SEM3F_MOUSE (O88632) Semaphorin-3F precursor (Semaphorin IV) (Sema IV)| Length = 785 Score = 29.6 bits (65), Expect = 3.9 Identities = 13/33 (39%), Positives = 20/33 (60%) Frame = +1 Query: 106 RWEKDPFFLAAEEVQESADRMESVYKIWVQERS 204 RW DP F+ AE + +SA+R + + +ERS Sbjct: 251 RWLNDPSFIHAELIPDSAERNDDKLYFFFRERS 283
>SEM3F_HUMAN (Q13275) Semaphorin-3F precursor (Semaphorin IV) (Sema IV) (Sema| III/F) Length = 785 Score = 29.6 bits (65), Expect = 3.9 Identities = 13/33 (39%), Positives = 20/33 (60%) Frame = +1 Query: 106 RWEKDPFFLAAEEVQESADRMESVYKIWVQERS 204 RW DP F+ AE + +SA+R + + +ERS Sbjct: 251 RWLNDPSFIHAELIPDSAERNDDKLYFFFRERS 283
>MPDZ_HUMAN (O75970) Multiple PDZ domain protein (Multi PDZ domain protein 1)| (Multi-PDZ-domain protein 1) Length = 2042 Score = 29.6 bits (65), Expect = 3.9 Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 5/106 (4%) Frame = +1 Query: 133 AAEEVQESADRMESVYKIW--VQERSGGDSALAGEVGAVELRRELHTALGTAKWQLDELE 306 +A ++ + D+ + W ++ER G L GE+ +EL + H+ LG + + Sbjct: 1316 SASKISQDVDKEDEFGYSWKNIRERYG---TLTGELHMIELEKG-HSGLGLSLAGNKDRS 1371 Query: 307 RA---IRSNDEVVSAGKDTRALHSNFVAAIAYRILEVEXHLNASNV 435 R I D +AGKD R ++ + I +IL H NAS++ Sbjct: 1372 RMSVFIVGIDPNGAAGKDGRLQIADELLEINGQILYGRSHQNASSI 1417
>GA2L1_MOUSE (Q8JZP9) GAS2-like protein 1 (Growth arrest-specific 2-like 1)| Length = 678 Score = 29.6 bits (65), Expect = 3.9 Identities = 16/37 (43%), Positives = 19/37 (51%) Frame = -3 Query: 164 RSADSWTSSAARKKGSFSQRSNDVAMARRDGTGEPPW 54 R A TSS AR+ S S+ V M RRD G+ W Sbjct: 421 RGAQLSTSSPARRTRSQSREEQAVLMVRRDRDGQHSW 457
>SYL_BIFLO (Q8G4D8) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 987 Score = 29.6 bits (65), Expect = 3.9 Identities = 16/47 (34%), Positives = 23/47 (48%) Frame = -3 Query: 200 LSCTHILYTDSIRSADSWTSSAARKKGSFSQRSNDVAMARRDGTGEP 60 LS + D+I ++W SA KG+ S R D +R+ GEP Sbjct: 505 LSLNGLRVDDAIAKVNAWLESAGVGKGTVSYRLRDWLFSRQRYWGEP 551
>CASC3_RAT (Q8K3X0) Protein CASC3 (Cancer susceptibility candidate gene 3| protein homolog) (Barentsz protein) (Btz) Length = 699 Score = 29.3 bits (64), Expect = 5.1 Identities = 17/50 (34%), Positives = 21/50 (42%) Frame = +2 Query: 179 TRYGCRRGAAAIRPSPGRSAPSSCDASCTPRSAPPSGSLMNWSGQLDQTT 328 T+ G AA P P S A+ P S PP+ NW +D TT Sbjct: 409 TKVGDAVKAAEEVPPPSEGLTS---AATVPESTPPAAKTGNWEAPVDSTT 455
>MPDZ_RAT (O55164) Multiple PDZ domain protein (Multi PDZ domain protein 1)| (Multi-PDZ domain protein 1) Length = 2054 Score = 29.3 bits (64), Expect = 5.1 Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 5/106 (4%) Frame = +1 Query: 133 AAEEVQESADRMESVYKIW--VQERSGGDSALAGEVGAVELRRELHTALGTAKWQLDELE 306 +A V E D+ + W +QER G L G++ +EL + H+ LG + + Sbjct: 1303 SATTVAEDEDKEDEFGYSWKNIQERYG---TLTGQLHMIELEKG-HSGLGLSLAGNKDRT 1358 Query: 307 RA---IRSNDEVVSAGKDTRALHSNFVAAIAYRILEVEXHLNASNV 435 R I D +AG+D R ++ + I +IL H NAS++ Sbjct: 1359 RMSVFIVGIDPTGAAGRDGRLQIADELLEINGQILYGRSHQNASSI 1404
>DNMBP_HUMAN (Q6XZF7) Dynamin-binding protein (Scaffold protein Tuba)| Length = 1577 Score = 29.3 bits (64), Expect = 5.1 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 2/59 (3%) Frame = +2 Query: 191 CRRG--AAAIRPSPGRSAPSSCDASCTPRSAPPSGSLMNWSGQLDQTTRLSRQERIREH 361 C +G +A++ PS S+PS C + S P SG + + + Q T R R H Sbjct: 1413 CDQGTLSASLNPSNSESSPSRCPSDPDSTSQPRSGDSADVARDVKQPTATPRSYRNFRH 1471
>NANO1_HUMAN (Q8WY41) Nanos homolog 1 (NOS-1) (EC_Rep1a)| Length = 292 Score = 28.9 bits (63), Expect = 6.7 Identities = 15/38 (39%), Positives = 20/38 (52%) Frame = +2 Query: 182 RYGCRRGAAAIRPSPGRSAPSSCDASCTPRSAPPSGSL 295 R+GC RG SP S+ SSC C+P + G+L Sbjct: 62 RFGCARGGNGGGGSPPSSSSSSC---CSPHTGAGPGAL 96
>Y1869_PASMU (Q9CJX1) UPF0301 protein PM1869| Length = 186 Score = 28.9 bits (63), Expect = 6.7 Identities = 16/62 (25%), Positives = 29/62 (46%) Frame = +1 Query: 151 ESADRMESVYKIWVQERSGGDSALAGEVGAVELRRELHTALGTAKWQLDELERAIRSNDE 330 ++A + YK+ Q + + G + + ALG A W +++LE I +ND Sbjct: 87 KTAQTFKHSYKVTDQLSLTTSADIIDTFGTAQAPEKYLVALGCASWTVNQLESEIANNDW 146 Query: 331 VV 336 +V Sbjct: 147 LV 148
>IASPP_HUMAN (Q8WUF5) RelA-associated inhibitor (Inhibitor of ASPP protein)| (Protein iASPP) (PPP1R13B-like protein) (NFkB-interacting protein 1) Length = 828 Score = 28.9 bits (63), Expect = 6.7 Identities = 16/36 (44%), Positives = 19/36 (52%) Frame = -2 Query: 291 LPLGGAERGVQLASQLDGADLPGEGRIAAAPLLHPY 184 +P RG + DGAD P GR +AP LHPY Sbjct: 75 IPEPFGSRGSPRKAATDGADTPF-GRSESAPTLHPY 109
>PTN22_MOUSE (P29352) Tyrosine-protein phosphatase non-receptor type 22 (EC| 3.1.3.48) (Hematopoietic cell protein-tyrosine phosphatase 70Z-PEP) Length = 802 Score = 28.5 bits (62), Expect = 8.7 Identities = 10/16 (62%), Positives = 12/16 (75%) Frame = +2 Query: 233 SAPSSCDASCTPRSAP 280 S P +CDASC PR +P Sbjct: 504 SLPGACDASCVPRHSP 519
>SYS_ERWCT (Q6D3V0) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase)| (SerRS) Length = 431 Score = 28.5 bits (62), Expect = 8.7 Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 19/95 (20%) Frame = +1 Query: 124 FFLAAEEVQESADRMESVYKIWVQERSGGDSALAGEVGAVE--------LRRELHTA--- 270 F L E +++ +R + V ++ + ++ + E+GA + LRRE++T Sbjct: 24 FKLDVETLRKQEERRK-VLQVETESLQAERNSRSKEIGAAKARGEDIEPLRREVNTLGEK 82 Query: 271 LGTAKWQLDELERAIRS--------NDEVVSAGKD 351 L TAK +LD+L+ IR D+ V GKD Sbjct: 83 LDTAKAELDQLQNEIRDLALTIPNLPDDSVPLGKD 117
>RAD50_HALSA (Q9HRW3) DNA double-strand break repair rad50 ATPase| Length = 883 Score = 28.5 bits (62), Expect = 8.7 Identities = 19/66 (28%), Positives = 32/66 (48%) Frame = +1 Query: 244 ELRRELHTALGTAKWQLDELERAIRSNDEVVSAGKDTRALHSNFVAAIAYRILEVEXHLN 423 E R +L +G A+ + ELE ++ V S +D +A+H V A+ E+ L Sbjct: 674 EDRDDLQAKIGAAENAIAELESLREEHERVQSRHQDLQAVHDE-VTALETMYGELRAELR 732 Query: 424 ASNVAE 441 NV++ Sbjct: 733 QQNVSK 738
>LRC45_MOUSE (Q8CIM1) Leucine-rich repeat-containing protein 45| Length = 670 Score = 28.5 bits (62), Expect = 8.7 Identities = 26/95 (27%), Positives = 43/95 (45%) Frame = +1 Query: 139 EEVQESADRMESVYKIWVQERSGGDSALAGEVGAVELRRELHTALGTAKWQLDELERAIR 318 +E Q + R E K+ QE + +S L ++ A + L + Q+DELER R Sbjct: 331 QERQSLSQRHEKERKLERQEAADRESKLLRDLSAANEKNLL------LRSQVDELERKAR 384 Query: 319 SNDEVVSAGKDTRALHSNFVAAIAYRILEVEXHLN 423 S E + T+ +N A + R ++ E L+ Sbjct: 385 SQQEQLFL---TKQELTNTSAELKIRAIQAEERLD 416
>MAST3_HUMAN (O60307) Microtubule-associated serine/threonine-protein kinase 3| (EC 2.7.11.1) Length = 1309 Score = 28.5 bits (62), Expect = 8.7 Identities = 18/46 (39%), Positives = 23/46 (50%) Frame = +2 Query: 164 GWNRCTRYGCRRGAAAIRPSPGRSAPSSCDASCTPRSAPPSGSLMN 301 GW R RR +A IR S+ SSC +S + PS SL+N Sbjct: 734 GWERSEVDYGRRLSADIRLRSWTSSGSSCQSSSSQPERGPSPSLLN 779 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.314 0.129 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,164,926 Number of Sequences: 219361 Number of extensions: 920598 Number of successful extensions: 2780 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 2636 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2778 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2968155324 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits)
