>RNF25_BOVIN (Q5E9N3) RING finger protein 25 (EC 6.3.2.-)|
          Length = 458

 Score = 35.0 bits (79), Expect = 0.048
 Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
 Frame = +1

Query: 7   DSHSQGEKGERGEWLQGWW---PPAGSRWCAPWRTSWPRRPARLSGRLPSPSASAGTTPA 177
           +SH+QG KG   +   G W   PP  +R CA W  +  R PA    RLP    +    P 
Sbjct: 387 ESHNQGGKGPPQDKGPGEWQGPPPRRTRDCAHWERAKNRTPASSYPRLPRGRGAYRPGPR 446

Query: 178 R 180
           R
Sbjct: 447 R 447

>RNF25_HUMAN (Q96BH1) RING finger protein 25 (EC 6.3.2.-)|
          Length = 459

 Score = 31.6 bits (70), Expect = 0.53
 Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
 Frame = +1

Query: 7   DSHSQGEKGERGEWLQGWW---PPAGSRWCAPWRTSWPRRPARLSGRLP 144
           + HSQG +G   E   G W   PP  +R C  W  S  R P     RLP
Sbjct: 388 EPHSQGVEGPPQEKGPGSWQGPPPRRTRDCVRWERSKGRTPGSSYPRLP 436

>PTPA1_ASPOR (Q2UN27) Serine/threonine-protein phosphatase 2A activator 1 (EC|
           5.2.1.8) (Peptidyl-prolyl cis-trans isomerase PTPA-1)
           (PPIase PTPA-1) (Rotamase PTPA-1) (Phosphotyrosyl
           phosphatase activator 1)
          Length = 478

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 15/44 (34%), Positives = 18/44 (40%)
 Frame = +1

Query: 64  PPAGSRWCAPWRTSWPRRPARLSGRLPSPSASAGTTPARPSAAT 195
           PP  +   APW TS   R    + R+PS        P  P A T
Sbjct: 406 PPPSTGTAAPWATSRAGREPPTTSRIPSALPDTSRLPPGPMAPT 449

>IF2_NOCFA (Q5YSC6) Translation initiation factor IF-2|
          Length = 969

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 22/56 (39%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
 Frame = +1

Query: 31  GERGEWLQGWWPPAGSRWCAPWRTSWPRRP--ARLSGRLPSPSASAGTTPARPSAA 192
           G R    QG   P G R   P   S P RP    +  R P P  SAG  P RP  A
Sbjct: 228 GPRPAAAQGGPRPGGPR---PSPGSMPPRPNPGAMPQRTPRPGPSAGGRPGRPGGA 280

>RIMB1_RAT (Q9JIR0) Peripheral-type benzodiazepine receptor-associated protein|
           1 (PRAX-1) (RIM-binding protein 1) (RIM-BP1)
          Length = 1847

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
 Frame = +3

Query: 3   ARQSQSGREGRAW---RMASRVVASSRIPLVRAMENLLAASSGPALRPAAVSVGVRGYNA 173
           AR S  G+EG  W   R   R++  S+  ++R    +   +    LRPA         + 
Sbjct: 242 ARLSLVGKEGPQWLHMRDFDRLLRESQREVLRLQRQIALRNQREPLRPARSQGSTAPSSV 301

Query: 174 GAPLRSHDRDEALED 218
           GAP      +  LED
Sbjct: 302 GAPAPGAPGETVLED 316

>DBP9_NEUCR (Q7S6F3) ATP-dependent RNA helicase dbp-9 (EC 3.6.1.-)|
          Length = 676

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -3

Query: 185 EGRAGVVPADADGDGSRPESRAGRRGQEVLHGAHQRDPAG 66
           E + G VP    GD  +   + G +G +  HG +++ P G
Sbjct: 625 ETQIGFVPFKKQGDDKKTRGKKGAKGGKGGHGKYKKGPGG 664

>BSN_HUMAN (Q9UPA5) Bassoon protein (Zinc-finger protein 231)|
          Length = 3925

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 20/54 (37%), Positives = 23/54 (42%)
 Frame = +1

Query: 22  GEKGERGEWLQGWWPPAGSRWCAPWRTSWPRRPARLSGRLPSPSASAGTTPARP 183
           G +  R    QG   PAG     P RT       + SGR PS S   G+TP  P
Sbjct: 104 GHESPRETRAQG---PAGQEADGPRRTLQVDSRTQRSGRSPSVSPDRGSTPTSP 154

>ABHD5_PONPY (Q5RBI4) Abhydrolase domain-containing protein 5|
          Length = 349

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +1

Query: 1   EQDSHSQGEKGERGEWLQGWWPPAGSRWCAPWRTS 105
           E++     + GER  WL GW P     WC P  TS
Sbjct: 4   EEEEVDSADTGERSGWLTGWLP----TWC-PTSTS 33

>DTBP1_MOUSE (Q91WZ8) Dystrobrevin-binding protein 1 (Dysbindin)|
           (Hermansky-Pudlak syndrome 7 protein homolog)
          Length = 352

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +1

Query: 127 LSGRLPSPSASAGTTPARPSAAT 195
           +S ++PSPS SA   PA PSA T
Sbjct: 281 MSLQIPSPSESASQPPASPSACT 303

>ANDR_RANCA (Q7T1K4) Androgen receptor (Dihydrotestosterone receptor) (bfAR)|
          Length = 777

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 114 TRPGGSPWRAPAGSCWRPPPLKP 46
           T   G+PWR P G+   PPP  P
Sbjct: 67  TEVRGTPWREPQGAQPDPPPCSP 89

>ABHD5_HUMAN (Q8WTS1) Abhydrolase domain-containing protein 5|
          Length = 349

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 1  EQDSHSQGEKGERGEWLQGWWPPAGSRWC 87
          E++     + GER  WL GW P     WC
Sbjct: 4  EEEEVDSADTGERSGWLTGWLP----TWC 28

>CALCR_HUMAN (P30988) Calcitonin receptor precursor (CT-R)|
          Length = 490

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 94  WRTSWPRRPARLSGRLPSPSASAGTTP 174
           W   W RRP+  S R  + +A AG  P
Sbjct: 429 WNQRWGRRPSNRSARAAAAAAEAGDIP 455

>ZN672_HUMAN (Q499Z4) Zinc finger protein 672|
          Length = 452

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +3

Query: 45  MASRVVASSRIPLVRAMENLLAASSGPALRPAAVSVGVRGYNAGAPLRSHDR 200
           + +R    S +   +A  + L  +S PA  P   +   R + +GA LRSH R
Sbjct: 132 LCARTFRQSALLFHQARAHPLGTTSDPAAPPHRCAQCPRAFRSGAGLRSHPR 183

>RRS1_MOUSE (Q9CYH6) Ribosome biogenesis regulatory protein homolog|
          Length = 365

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +2

Query: 23  ERRESVENGFKGGGLQQDPAGARHGEPPGR 112
           +RR+  + G + GG +Q P+G R G PPG+
Sbjct: 302 KRRKMSQKGKRKGG-RQGPSGKRKGGPPGQ 330

>Y24K_STRGR (P12752) Hypothetical 24.7 kDa protein in photolyase 5'region|
          Length = 238

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 19/45 (42%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = +1

Query: 67  PAGSRWCAPWRTSWPRRPARLSGRLPSP--SASAGTTPARPSAAT 195
           P G+   A WRT+ P  P R     P P  SAS    P R S AT
Sbjct: 9   PNGTSSSATWRTARP-APRRCGSCRPPPPGSASPSPRPRRASCAT 52

>7UP2_DROME (P16376) Steroid receptor seven-up, isoform A|
          Length = 746

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +1

Query: 91  PWRTSWPRRPARLSGRLPSPSASAGTTPARPSAATTG 201
           P  ++W   PA L G L + SA  GTT    S AT G
Sbjct: 38  PPHSAWHEPPASLGGHLHAASAGPGTTTG--SVATGG 72

>7UP1_DROME (P16375) Steroid receptor seven-up, isoforms B/C|
          Length = 543

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +1

Query: 91  PWRTSWPRRPARLSGRLPSPSASAGTTPARPSAATTG 201
           P  ++W   PA L G L + SA  GTT    S AT G
Sbjct: 38  PPHSAWHEPPASLGGHLHAASAGPGTTTG--SVATGG 72

>CK021_HUMAN (Q9P2W6) Protein C11orf21|
          Length = 132

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 17/45 (37%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
 Frame = +1

Query: 73  GSRWCAPWRTSWPRRPARLSG--RLPSPSASAGTTPARPSAATTG 201
           G  WC  WR    RRP R S   R P  S+ +G  P      T G
Sbjct: 2   GRTWCGMWRR---RRPGRRSAVPRWPHLSSQSGVEPPDRWTGTPG 43

>BSN_MOUSE (O88737) Bassoon protein|
          Length = 3941

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 19/54 (35%), Positives = 24/54 (44%)
 Frame = +1

Query: 22  GEKGERGEWLQGWWPPAGSRWCAPWRTSWPRRPARLSGRLPSPSASAGTTPARP 183
           G +  R    QG   P+G    +P RT       + SGR PS S   G+TP  P
Sbjct: 101 GRESPRETRAQG---PSGQEAESPRRTLQVDSRTQRSGRSPSVSPDRGSTPTSP 151

>PGCB_RAT (P55068) Brevican core protein precursor (Brain-enriched|
           hyaluronan-binding protein) (BEHAB protein) [Contains:
           Brevican core protein isoform 1; Brevican core protein
           isoform 2]
          Length = 883

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +1

Query: 82  WCAPWRTSWPRRPARLSGRLPSPSASAGTTPARPSAATT 198
           W AP  +  PRRPAR    + +P    G  P +  A  T
Sbjct: 840 WEAPQISCVPRRPARALRSMTAPEGPRGQLPRQRKALLT 878

>ATG26_CRYNE (Q5KK25) Sterol 3-beta-glucosyltransferase (EC 2.4.1.173)|
           (Autophagy-related protein 26)
          Length = 1585

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
 Frame = +1

Query: 64  PPAGSRWCAPWRTSWPRRPA-RLSGRLPSPS--ASAGTTPARPSAATT 198
           PP+ +     WR SW R+PA +L G  PS S  +  G  P   S   T
Sbjct: 720 PPSMNDDARNWRPSWIRKPASKLFGSSPSGSFVSHPGRLPTDSSTTVT 767

>ZN553_MOUSE (Q3US17) Zinc finger protein 553|
          Length = 591

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 2   SKTVTVRERRESVENGFKGGGLQQDPAGARHGEPP 106
           S ++T R    S +  F   GL+ +P G + GEPP
Sbjct: 380 SPSLTPRSPSHSSDGPFGLPGLEPEPGGPQAGEPP 414

>ODO2_BARQU (Q6FYD4) Dihydrolipoyllysine-residue succinyltransferase component|
           of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61)
           (E2) (Dihydrolipoamide succinyltransferase component of
           2-oxoglutarate dehydrogenase complex)
          Length = 410

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +1

Query: 88  APWRTSWPRRPARLSGRLPSPSASAGTTPARPSAA 192
           +P  TS P  P+ L     S +  +GT P  PSAA
Sbjct: 88  SPSATSIPEAPSELEQSPSSSATPSGTMPPAPSAA 122

>IF2_MYCTU (P65131) Translation initiation factor IF-2|
          Length = 900

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
 Frame = +1

Query: 109 PRRPARLSGR----LPSPSASAGTTPARPSAATTG 201
           PR PA   G     +P P AS G+ P RP  A  G
Sbjct: 168 PRPPAPRPGTARPGVPRPGASPGSMPPRPGGAVGG 202

>IF2_MYCBO (P65132) Translation initiation factor IF-2|
          Length = 900

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
 Frame = +1

Query: 109 PRRPARLSGR----LPSPSASAGTTPARPSAATTG 201
           PR PA   G     +P P AS G+ P RP  A  G
Sbjct: 168 PRPPAPRPGTARPGVPRPGASPGSMPPRPGGAVGG 202

>APA_MYCAV (Q48919) Alanine and proline-rich secreted protein apa precursor|
           (45/47 kDa antigen) (Fibronectin attachment protein)
           (FAP-A)
          Length = 381

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
 Frame = +1

Query: 43  EWLQGWWPPAGSRWCAPWRTSWPRRPARLSGRLPSPSASAG---TTPARPSAATTG 201
           E +Q W PP       P     P  PA  +   P+P A A    T PA P+ A  G
Sbjct: 296 ESIQAWTPPPAP----PAAPGGPGAPAPGAPGAPAPGAPAAPGVTAPAAPAPAAPG 347

>TY3H_DROME (P18459) Tyrosine 3-monooxygenase (EC 1.14.16.2) (Tyrosine|
           3-hydroxylase) (TH) (Protein Pale)
          Length = 579

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = +3

Query: 54  RVVASSRIPLVRAMENLLAASSGPALRPAAVSVGVRGYNAGAPLR 188
           ++   +R+P ++ M + L  ++G +LRPAA  +  R + A    R
Sbjct: 341 QIFVETRLPQLQEMSDFLRKNTGFSLRPAAGLLTARDFLASLAFR 385

>HORN_HUMAN (Q86YZ3) Hornerin|
          Length = 2850

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 29  RESVENGFKGGGLQQDPAGARHGEPPG 109
           R+S+ +G +G G +Q P+  RHG   G
Sbjct: 291 RQSLGHGRQGSGSRQSPSHVRHGSGSG 317


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.313    0.126    0.443 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,440,847
Number of Sequences: 219361
Number of extensions: 666120
Number of successful extensions: 2761
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 2582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2760
length of database: 80,573,946
effective HSP length: 78
effective length of database: 63,463,788
effective search space used: 1523130912
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)